data_9C12
#
_model_server_result.job_id            Kv7K24ukDpYyNKWDQRUpUg 
_model_server_result.datetime_utc      '2024-12-23 06:13:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9c12 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1601}' 
#
_entry.id    9C12 
#
_exptl.entry_id    9C12 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              625.774 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(5~{S},6~{R},7~{E},9~{E},11~{Z},14~{Z})-6-[(2~{R})-2-[[(4~{S})-4-azanyl-5-oxidanyl-5-oxidanylidene-pentanoyl]amino]-3-( 2-hydroxy-2-oxoethylamino)-3-oxidanylidene-propyl]sulfanyl-5-oxidanyl-icosa-7,9,11,14-tetraenoic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9C12 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9C12 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C30 H47 N3 O9 S' 
_chem_comp.formula_weight    625.774 
_chem_comp.id                LTX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(5~{S},6~{R},7~{E},9~{E},11~{Z},14~{Z})-6-[(2~{R})-2-[[(4~{S})-4-azanyl-5-oxidanyl-5-oxidanylidene-pentanoyl]amino]-3-( 2-hydroxy-2-oxoethylamino)-3-oxidanylidene-propyl]sulfanyl-5-oxidanyl-icosa-7,9,11,14-tetraenoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'Leukotriene C4' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O32 C21 LTX doub 269 n n 
C20 C19 LTX sing 270 n n 
C19 C18 LTX sing 271 n n 
C21 O31 LTX sing 272 n n 
C21 CA3 LTX sing 273 n n 
CA3 N3 LTX sing 274 n n 
C18 C17 LTX sing 275 n n 
C17 C16 LTX sing 276 n n 
C11 C12 LTX doub 277 z n 
C11 C10 LTX sing 278 n n 
O1 C1 LTX doub 279 n n 
O3 C5 LTX sing 280 n n 
N3 C22 LTX sing 281 n n 
C12 C13 LTX sing 282 n n 
C9 C10 LTX doub 283 e n 
C9 C8 LTX sing 284 n n 
C16 C15 LTX sing 285 n n 
O33 C22 LTX doub 286 n n 
C7 C8 LTX doub 287 e n 
C7 C6 LTX sing 288 n n 
C22 CA2 LTX sing 289 n n 
C1 C2 LTX sing 290 n n 
C1 O2 LTX sing 291 n n 
C5 C4 LTX sing 292 n n 
C5 C6 LTX sing 293 n n 
C3 C4 LTX sing 294 n n 
C3 C2 LTX sing 295 n n 
C13 C14 LTX sing 296 n n 
C15 C14 LTX doub 297 z n 
SG2 C6 LTX sing 298 n n 
SG2 CB2 LTX sing 299 n n 
CA2 CB2 LTX sing 300 n n 
CA2 N2 LTX sing 301 n n 
N2 CD1 LTX sing 302 n n 
CD1 CG1 LTX sing 303 n n 
CD1 OE1 LTX doub 304 n n 
O11 C23 LTX doub 305 n n 
CG1 CB1 LTX sing 306 n n 
N1 CA1 LTX sing 307 n n 
C23 O12 LTX sing 308 n n 
C23 CA1 LTX sing 309 n n 
CB1 CA1 LTX sing 310 n n 
O2 H1 LTX sing 311 n n 
C2 H2 LTX sing 312 n n 
C2 H3 LTX sing 313 n n 
C3 H4 LTX sing 314 n n 
C3 H5 LTX sing 315 n n 
C4 H6 LTX sing 316 n n 
C4 H7 LTX sing 317 n n 
C5 H8 LTX sing 318 n n 
O3 H9 LTX sing 319 n n 
C6 H10 LTX sing 320 n n 
C7 H11 LTX sing 321 n n 
C8 H12 LTX sing 322 n n 
C9 H13 LTX sing 323 n n 
C10 H14 LTX sing 324 n n 
C11 H15 LTX sing 325 n n 
C12 H16 LTX sing 326 n n 
C13 H17 LTX sing 327 n n 
C13 H18 LTX sing 328 n n 
C14 H19 LTX sing 329 n n 
C15 H20 LTX sing 330 n n 
C16 H21 LTX sing 331 n n 
C16 H22 LTX sing 332 n n 
C17 H23 LTX sing 333 n n 
C17 H24 LTX sing 334 n n 
C18 H25 LTX sing 335 n n 
C18 H26 LTX sing 336 n n 
C19 H27 LTX sing 337 n n 
C19 H28 LTX sing 338 n n 
C20 H29 LTX sing 339 n n 
C20 H30 LTX sing 340 n n 
C20 H31 LTX sing 341 n n 
O31 H32 LTX sing 342 n n 
CA3 H33 LTX sing 343 n n 
CA3 H34 LTX sing 344 n n 
N3 H35 LTX sing 345 n n 
CA2 H36 LTX sing 346 n n 
CB2 H37 LTX sing 347 n n 
CB2 H38 LTX sing 348 n n 
N2 H39 LTX sing 349 n n 
CG1 H40 LTX sing 350 n n 
CG1 H41 LTX sing 351 n n 
CB1 H42 LTX sing 352 n n 
CB1 H43 LTX sing 353 n n 
CA1 H44 LTX sing 354 n n 
N1 H45 LTX sing 355 n n 
N1 H46 LTX sing 356 n n 
O12 H48 LTX sing 357 n n 
#
_atom_sites.entry_id                     9C12 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 LTX A 1 1601 1601 LTX LTX . 
C 3 CLR A 1 1602 1602 CLR CLR . 
D 3 CLR A 1 1603 1603 CLR CLR . 
E 3 CLR A 1 1604 1604 CLR CLR . 
F 4 UNL A 1 1605 1605 UNL PC1 . 
G 3 CLR A 1 1606 1607 CLR CLR . 
H 4 UNL A 1 1607 1609 UNL PC1 . 
I 3 CLR A 1 1608 1611 CLR CLR . 
J 4 UNL A 1 1609 1613 UNL PC1 . 
K 4 UNL A 1 1610 1614 UNL PC1 . 
L 4 UNL A 1 1611 1615 UNL PC1 . 
M 4 UNL A 1 1612 1616 UNL PC1 . 
N 4 UNL A 1 1613 1617 UNL PC1 . 
O 4 UNL A 1 1614 1618 UNL PC1 . 
P 4 UNL A 1 1615 1619 UNL PC1 . 
Q 4 UNL A 1 1616 1624 UNL PC1 . 
R 4 UNL A 1 1617 1625 UNL PC1 . 
S 4 UNL A 1 1618 1626 UNL PC1 . 
T 4 UNL A 1 1619 1627 UNL PC1 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O2 LTX . . . B 2 186.933 183.323 184.485 1 98.75 ? O2 LTX 1601 A 1 
HETATM 2 C C1 LTX . . . B 2 185.989 182.552 184.223 1 97.63 ? C1 LTX 1601 A 1 
HETATM 3 O O1 LTX . . . B 2 185.786 181.481 184.827 1 96.27 ? O1 LTX 1601 A 1 
HETATM 4 C C2 LTX . . . B 2 185.031 182.943 183.111 1 95.73 ? C2 LTX 1601 A 1 
HETATM 5 C C3 LTX . . . B 2 184.339 184.252 183.321 1 96.3 ? C3 LTX 1601 A 1 
HETATM 6 C C4 LTX . . . B 2 183.362 184.598 182.212 1 92.88 ? C4 LTX 1601 A 1 
HETATM 7 C C5 LTX . . . B 2 182.737 186.002 182.307 1 97.88 ? C5 LTX 1601 A 1 
HETATM 8 O O3 LTX . . . B 2 181.974 186.106 183.507 1 95.4 ? O3 LTX 1601 A 1 
HETATM 9 C C6 LTX . . . B 2 181.835 186.27 181.099 1 97.76 ? C6 LTX 1601 A 1 
HETATM 10 C C7 LTX . . . B 2 181.413 187.705 181.024 1 94.02 ? C7 LTX 1601 A 1 
HETATM 11 C C8 LTX . . . B 2 180.666 188.274 180.09 1 92.63 ? C8 LTX 1601 A 1 
HETATM 12 C C9 LTX . . . B 2 180.318 189.669 180.069 1 88.65 ? C9 LTX 1601 A 1 
HETATM 13 C C10 LTX . . . B 2 180.596 190.581 181.081 1 95.29 ? C10 LTX 1601 A 1 
HETATM 14 C C11 LTX . . . B 2 180.464 192.019 181.065 1 96.55 ? C11 LTX 1601 A 1 
HETATM 15 C C12 LTX . . . B 2 179.901 192.776 180.135 1 96.49 ? C12 LTX 1601 A 1 
HETATM 16 C C13 LTX . . . B 2 180.173 194.244 179.982 1 95.59 ? C13 LTX 1601 A 1 
HETATM 17 C C14 LTX . . . B 2 178.988 195.136 180.184 1 92.9 ? C14 LTX 1601 A 1 
HETATM 18 O O32 LTX . . . B 2 179.231 179.879 180.92 1 95.12 ? O32 LTX 1601 A 1 
HETATM 19 C C21 LTX . . . B 2 179.258 180.052 179.686 1 97.37 ? C21 LTX 1601 A 1 
HETATM 20 O O31 LTX . . . B 2 178.268 180.047 178.929 1 100.24 ? O31 LTX 1601 A 1 
HETATM 21 C CA3 LTX . . . B 2 180.622 180.298 179.046 1 94.7 ? CA3 LTX 1601 A 1 
HETATM 22 N N3 LTX . . . B 2 180.691 181.566 178.358 1 93.97 ? N3 LTX 1601 A 1 
HETATM 23 C C22 LTX . . . B 2 181.555 182.513 178.724 1 96.49 ? C22 LTX 1601 A 1 
HETATM 24 O O33 LTX . . . B 2 182.295 182.413 179.7 1 99.09 ? O33 LTX 1601 A 1 
HETATM 25 C CA2 LTX . . . B 2 181.609 183.77 177.858 1 94.85 ? CA2 LTX 1601 A 1 
HETATM 26 C CB2 LTX . . . B 2 181.192 184.98 178.684 1 97.16 ? CB2 LTX 1601 A 1 
HETATM 27 S SG2 LTX . . . B 2 182.606 185.667 179.575 1 116.09 ? SG2 LTX 1601 A 1 
HETATM 28 N N2 LTX . . . B 2 180.855 183.674 176.621 1 94.77 ? N2 LTX 1601 A 1 
HETATM 29 C CD1 LTX . . . B 2 181.434 183.823 175.429 1 98.26 ? CD1 LTX 1601 A 1 
HETATM 30 O OE1 LTX . . . B 2 180.816 183.662 174.379 1 105.49 ? OE1 LTX 1601 A 1 
HETATM 31 C CG1 LTX . . . B 2 182.898 184.207 175.449 1 88.87 ? CG1 LTX 1601 A 1 
HETATM 32 C CB1 LTX . . . B 2 183.483 184.383 174.055 1 89.08 ? CB1 LTX 1601 A 1 
HETATM 33 C CA1 LTX . . . B 2 184.948 184.829 174.055 1 92.55 ? CA1 LTX 1601 A 1 
HETATM 34 N N1 LTX . . . B 2 185.282 185.479 172.759 1 93.49 ? N1 LTX 1601 A 1 
HETATM 35 C C23 LTX . . . B 2 185.899 183.647 174.279 1 99.12 ? C23 LTX 1601 A 1 
HETATM 36 O O11 LTX . . . B 2 186.74 183.42 173.387 1 96.44 ? O11 LTX 1601 A 1 
HETATM 37 O O12 LTX . . . B 2 185.773 183.002 175.339 1 99.49 ? O12 LTX 1601 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           329 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           37 
#