data_9C15 # _model_server_result.job_id H7r9SDHepkWNyZXc4pDJWA _model_server_result.datetime_utc '2025-01-22 11:34:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9c15 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":501}' # _entry.id 9C15 # _exptl.entry_id 9C15 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.11 _cell.angle_gamma 90 _cell.entry_id 9C15 _cell.length_a 58.3 _cell.length_b 126.39 _cell.length_c 112.94 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9C15 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OG SER 18 B SER 17 1_555 H MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? metalc ? metalc2 B OG1 THR 36 B THR 35 1_555 H MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc3 G O2G GNP . B GNP 501 1_555 H MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? metalc ? metalc4 G O1B GNP . B GNP 501 1_555 H MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 185 n n PG O2G GNP sing 186 n n PG O3G GNP sing 187 n n PG N3B GNP sing 188 n n O2G HOG2 GNP sing 189 n n O3G HOG3 GNP sing 190 n n N3B PB GNP sing 191 n n N3B HNB3 GNP sing 192 n n PB O1B GNP doub 193 n n PB O2B GNP sing 194 n n PB O3A GNP sing 195 n n O2B HOB2 GNP sing 196 n n O3A PA GNP sing 197 n n PA O1A GNP doub 198 n n PA O2A GNP sing 199 n n PA O5' GNP sing 200 n n O2A HOA2 GNP sing 201 n n O5' C5' GNP sing 202 n n C5' C4' GNP sing 203 n n C5' "H5'2" GNP sing 204 n n C5' "H5'1" GNP sing 205 n n C4' O4' GNP sing 206 n n C4' C3' GNP sing 207 n n C4' H4' GNP sing 208 n n O4' C1' GNP sing 209 n n C3' O3' GNP sing 210 n n C3' C2' GNP sing 211 n n C3' H3' GNP sing 212 n n O3' HO3' GNP sing 213 n n C2' O2' GNP sing 214 n n C2' C1' GNP sing 215 n n C2' H2' GNP sing 216 n n O2' HO2' GNP sing 217 n n C1' N9 GNP sing 218 n n C1' H1' GNP sing 219 n n N9 C8 GNP sing 220 n y N9 C4 GNP sing 221 n y C8 N7 GNP doub 222 n y C8 H8 GNP sing 223 n n N7 C5 GNP sing 224 n y C5 C6 GNP sing 225 n y C5 C4 GNP doub 226 n y C6 O6 GNP doub 227 n n C6 N1 GNP sing 228 n y N1 C2 GNP sing 229 n y N1 HN1 GNP sing 230 n n C2 N2 GNP sing 231 n n C2 N3 GNP doub 232 n y N2 HN21 GNP sing 233 n n N2 HN22 GNP sing 234 n n N3 C4 GNP sing 235 n y # _atom_sites.entry_id 9C15 _atom_sites.fract_transf_matrix[1][1] 0.017153 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004633 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007912 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009172 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 A1ATF A 1 1101 1101 A1ATF D29 . D 4 MG A 1 1102 2 MG MG . E 5 IPA A 1 1103 1 IPA IPA . F 5 IPA A 1 1104 101 IPA IPA . G 6 GNP B 1 501 501 GNP GNP . H 4 MG B 1 502 1 MG MG . I 7 HOH A 1 1201 1 HOH HOH . I 7 HOH A 2 1202 8 HOH HOH . I 7 HOH A 3 1203 15 HOH HOH . I 7 HOH A 4 1204 14 HOH HOH . I 7 HOH A 5 1205 3 HOH HOH . I 7 HOH A 6 1206 19 HOH HOH . I 7 HOH A 7 1207 5 HOH HOH . I 7 HOH A 8 1208 29 HOH HOH . I 7 HOH A 9 1209 4 HOH HOH . I 7 HOH A 10 1210 16 HOH HOH . I 7 HOH A 11 1211 7 HOH HOH . I 7 HOH A 12 1212 6 HOH HOH . I 7 HOH A 13 1213 34 HOH HOH . I 7 HOH A 14 1214 21 HOH HOH . I 7 HOH A 15 1215 24 HOH HOH . I 7 HOH A 16 1216 2 HOH HOH . I 7 HOH A 17 1217 20 HOH HOH . I 7 HOH A 18 1218 30 HOH HOH . I 7 HOH A 19 1219 9 HOH HOH . I 7 HOH A 20 1220 35 HOH HOH . I 7 HOH A 21 1221 32 HOH HOH . I 7 HOH A 22 1222 28 HOH HOH . I 7 HOH A 23 1223 27 HOH HOH . I 7 HOH A 24 1224 23 HOH HOH . I 7 HOH A 25 1225 10 HOH HOH . I 7 HOH A 26 1226 31 HOH HOH . I 7 HOH A 27 1227 26 HOH HOH . I 7 HOH A 28 1228 18 HOH HOH . I 7 HOH A 29 1229 36 HOH HOH . I 7 HOH A 30 1230 11 HOH HOH . I 7 HOH A 31 1231 38 HOH HOH . I 7 HOH A 32 1232 17 HOH HOH . I 7 HOH A 33 1233 22 HOH HOH . I 7 HOH A 34 1234 37 HOH HOH . I 7 HOH A 35 1235 13 HOH HOH . J 7 HOH B 1 601 25 HOH HOH . J 7 HOH B 2 602 33 HOH HOH . J 7 HOH B 3 603 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . G 6 15.335 -10.515 53.969 1 89.36 ? PG GNP 501 B 1 HETATM 2 O O1G GNP . . . G 6 13.859 -10.771 53.875 1 109.11 ? O1G GNP 501 B 1 HETATM 3 O O2G GNP . . . G 6 15.97 -10.697 52.591 1 81.99 ? O2G GNP 501 B 1 HETATM 4 O O3G GNP . . . G 6 15.584 -9.064 54.463 1 109.69 ? O3G GNP 501 B 1 HETATM 5 N N3B GNP . . . G 6 16.035 -11.622 55.067 1 114.53 ? N3B GNP 501 B 1 HETATM 6 P PB GNP . . . G 6 15.776 -13.229 54.874 1 99.37 ? PB GNP 501 B 1 HETATM 7 O O1B GNP . . . G 6 15.796 -13.561 53.405 1 100.68 ? O1B GNP 501 B 1 HETATM 8 O O2B GNP . . . G 6 14.436 -13.593 55.457 1 106.38 ? O2B GNP 501 B 1 HETATM 9 O O3A GNP . . . G 6 16.961 -14.078 55.632 1 92.8 ? O3A GNP 501 B 1 HETATM 10 P PA GNP . . . G 6 18.264 -14.604 54.883 1 109.03 ? PA GNP 501 B 1 HETATM 11 O O1A GNP . . . G 6 17.829 -15.752 53.975 1 94.03 ? O1A GNP 501 B 1 HETATM 12 O O2A GNP . . . G 6 18.987 -13.504 54.212 1 116.32 ? O2A GNP 501 B 1 HETATM 13 O O5' GNP . . . G 6 19.139 -15.193 56.053 1 129.54 ? O5' GNP 501 B 1 HETATM 14 C C5' GNP . . . G 6 19.188 -14.556 57.347 1 123.64 ? C5' GNP 501 B 1 HETATM 15 C C4' GNP . . . G 6 20.273 -15.202 58.174 1 108.32 ? C4' GNP 501 B 1 HETATM 16 O O4' GNP . . . G 6 19.801 -16.466 58.699 1 107.29 ? O4' GNP 501 B 1 HETATM 17 C C3' GNP . . . G 6 21.579 -15.497 57.433 1 111.96 ? C3' GNP 501 B 1 HETATM 18 O O3' GNP . . . G 6 22.708 -15.143 58.224 1 106.05 ? O3' GNP 501 B 1 HETATM 19 C C2' GNP . . . G 6 21.507 -17.007 57.188 1 107.95 ? C2' GNP 501 B 1 HETATM 20 O O2' GNP . . . G 6 22.795 -17.608 57.139 1 113.19 ? O2' GNP 501 B 1 HETATM 21 C C1' GNP . . . G 6 20.758 -17.47 58.434 1 123.75 ? C1' GNP 501 B 1 HETATM 22 N N9 GNP . . . G 6 20.057 -18.751 58.255 1 134.9 ? N9 GNP 501 B 1 HETATM 23 C C8 GNP . . . G 6 19.01 -19.013 57.41 1 126.91 ? C8 GNP 501 B 1 HETATM 24 N N7 GNP . . . G 6 18.595 -20.257 57.471 1 132.31 ? N7 GNP 501 B 1 HETATM 25 C C5 GNP . . . G 6 19.424 -20.849 58.409 1 142.34 ? C5 GNP 501 B 1 HETATM 26 C C6 GNP . . . G 6 19.472 -22.201 58.915 1 145.82 ? C6 GNP 501 B 1 HETATM 27 O O6 GNP . . . G 6 18.75 -23.145 58.598 1 136.16 ? O6 GNP 501 B 1 HETATM 28 N N1 GNP . . . G 6 20.469 -22.364 59.856 1 144.28 ? N1 GNP 501 B 1 HETATM 29 C C2 GNP . . . G 6 21.324 -21.381 60.278 1 144.81 ? C2 GNP 501 B 1 HETATM 30 N N2 GNP . . . G 6 22.229 -21.721 61.197 1 139.6 ? N2 GNP 501 B 1 HETATM 31 N N3 GNP . . . G 6 21.291 -20.13 59.82 1 148.53 ? N3 GNP 501 B 1 HETATM 32 C C4 GNP . . . G 6 20.329 -19.935 58.899 1 143.91 ? C4 GNP 501 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 225 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 32 #