data_9C1A # _model_server_result.job_id B_XjgYYbdB3eIS1p8hKTeg _model_server_result.datetime_utc '2024-10-19 03:41:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9c1a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":205}' # _entry.id 9C1A # _exptl.entry_id 9C1A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9C1A _cell.length_a 108.653 _cell.length_b 108.653 _cell.length_c 65.759 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9C1A _symmetry.cell_setting ? _symmetry.Int_Tables_number 177 _symmetry.space_group_name_Hall 'P 6 2' _symmetry.space_group_name_H-M 'P 6 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 42 A SER 27 1_555 B MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc2 A O LYS 51 A LYS 36 1_555 G MG MG . A MG 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc3 B MG MG . A MG 201 1_555 C O2B GDP . A GDP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc4 B MG MG . A MG 201 1_555 H O HOH . A HOH 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc5 B MG MG . A MG 201 1_555 H O HOH . A HOH 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc6 B MG MG . A MG 201 1_555 H O HOH . A HOH 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc7 B MG MG . A MG 201 1_555 H O HOH . A HOH 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc8 G MG MG . A MG 206 1_555 H O HOH . A HOH 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc9 G MG MG . A MG 206 1_555 H O HOH . A HOH 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc10 G MG MG . A MG 206 1_555 H O HOH . A HOH 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? metalc ? metalc11 G MG MG . A MG 206 1_555 H O HOH . A HOH 443 2_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.639 ? metalc ? metalc12 G MG MG . A MG 206 1_555 H O HOH . A HOH 450 2_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc13 G MG MG . A MG 206 1_555 H O HOH . A HOH 470 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 161 n n C1 C2 GOL sing 162 n n C1 H11 GOL sing 163 n n C1 H12 GOL sing 164 n n O1 HO1 GOL sing 165 n n C2 O2 GOL sing 166 n n C2 C3 GOL sing 167 n n C2 H2 GOL sing 168 n n O2 HO2 GOL sing 169 n n C3 O3 GOL sing 170 n n C3 H31 GOL sing 171 n n C3 H32 GOL sing 172 n n O3 HO3 GOL sing 173 n n # _atom_sites.entry_id 9C1A _atom_sites.fract_transf_matrix[1][1] 0.009204 _atom_sites.fract_transf_matrix[1][2] 0.005314 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010627 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015207 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 201 1180 MG MG . C 3 GDP A 1 202 1179 GDP GDP . D 4 GOL A 1 203 1180 GOL GOL . E 4 GOL A 1 204 1181 GOL GOL . F 4 GOL A 1 205 1182 GOL GOL . G 2 MG A 1 206 1183 MG MG . H 5 HOH A 1 301 1213 HOH HOH . H 5 HOH A 2 302 1346 HOH HOH . H 5 HOH A 3 303 1224 HOH HOH . H 5 HOH A 4 304 1246 HOH HOH . H 5 HOH A 5 305 1216 HOH HOH . H 5 HOH A 6 306 1344 HOH HOH . H 5 HOH A 7 307 1329 HOH HOH . H 5 HOH A 8 308 1332 HOH HOH . H 5 HOH A 9 309 1242 HOH HOH . H 5 HOH A 10 310 1305 HOH HOH . H 5 HOH A 11 311 1366 HOH HOH . H 5 HOH A 12 312 1194 HOH HOH . H 5 HOH A 13 313 1296 HOH HOH . H 5 HOH A 14 314 1322 HOH HOH . H 5 HOH A 15 315 1374 HOH HOH . H 5 HOH A 16 316 1255 HOH HOH . H 5 HOH A 17 317 1195 HOH HOH . H 5 HOH A 18 318 1186 HOH HOH . H 5 HOH A 19 319 1200 HOH HOH . H 5 HOH A 20 320 1244 HOH HOH . H 5 HOH A 21 321 1196 HOH HOH . H 5 HOH A 22 322 1289 HOH HOH . H 5 HOH A 23 323 1222 HOH HOH . H 5 HOH A 24 324 1307 HOH HOH . H 5 HOH A 25 325 1220 HOH HOH . H 5 HOH A 26 326 1197 HOH HOH . H 5 HOH A 27 327 1319 HOH HOH . H 5 HOH A 28 328 1193 HOH HOH . H 5 HOH A 29 329 1240 HOH HOH . H 5 HOH A 30 330 1234 HOH HOH . H 5 HOH A 31 331 1207 HOH HOH . H 5 HOH A 32 332 1237 HOH HOH . H 5 HOH A 33 333 1243 HOH HOH . H 5 HOH A 34 334 1409 HOH HOH . H 5 HOH A 35 335 1356 HOH HOH . H 5 HOH A 36 336 1189 HOH HOH . H 5 HOH A 37 337 1304 HOH HOH . H 5 HOH A 38 338 1368 HOH HOH . H 5 HOH A 39 339 1386 HOH HOH . H 5 HOH A 40 340 1248 HOH HOH . H 5 HOH A 41 341 1191 HOH HOH . H 5 HOH A 42 342 1313 HOH HOH . H 5 HOH A 43 343 1219 HOH HOH . H 5 HOH A 44 344 1190 HOH HOH . H 5 HOH A 45 345 1231 HOH HOH . H 5 HOH A 46 346 1333 HOH HOH . H 5 HOH A 47 347 1343 HOH HOH . H 5 HOH A 48 348 1391 HOH HOH . H 5 HOH A 49 349 1211 HOH HOH . H 5 HOH A 50 350 1267 HOH HOH . H 5 HOH A 51 351 1188 HOH HOH . H 5 HOH A 52 352 1261 HOH HOH . H 5 HOH A 53 353 1185 HOH HOH . H 5 HOH A 54 354 1259 HOH HOH . H 5 HOH A 55 355 1371 HOH HOH . H 5 HOH A 56 356 1257 HOH HOH . H 5 HOH A 57 357 1260 HOH HOH . H 5 HOH A 58 358 1202 HOH HOH . H 5 HOH A 59 359 1228 HOH HOH . H 5 HOH A 60 360 1326 HOH HOH . H 5 HOH A 61 361 1205 HOH HOH . H 5 HOH A 62 362 1310 HOH HOH . H 5 HOH A 63 363 1284 HOH HOH . H 5 HOH A 64 364 1269 HOH HOH . H 5 HOH A 65 365 1373 HOH HOH . H 5 HOH A 66 366 1199 HOH HOH . H 5 HOH A 67 367 1301 HOH HOH . H 5 HOH A 68 368 1247 HOH HOH . H 5 HOH A 69 369 1347 HOH HOH . H 5 HOH A 70 370 1382 HOH HOH . H 5 HOH A 71 371 1233 HOH HOH . H 5 HOH A 72 372 1215 HOH HOH . H 5 HOH A 73 373 1229 HOH HOH . H 5 HOH A 74 374 1336 HOH HOH . H 5 HOH A 75 375 1239 HOH HOH . H 5 HOH A 76 376 1349 HOH HOH . H 5 HOH A 77 377 1265 HOH HOH . H 5 HOH A 78 378 1286 HOH HOH . H 5 HOH A 79 379 1311 HOH HOH . H 5 HOH A 80 380 1288 HOH HOH . H 5 HOH A 81 381 1277 HOH HOH . H 5 HOH A 82 382 1250 HOH HOH . H 5 HOH A 83 383 1203 HOH HOH . H 5 HOH A 84 384 1268 HOH HOH . H 5 HOH A 85 385 1345 HOH HOH . H 5 HOH A 86 386 1201 HOH HOH . H 5 HOH A 87 387 1227 HOH HOH . H 5 HOH A 88 388 1283 HOH HOH . H 5 HOH A 89 389 1309 HOH HOH . H 5 HOH A 90 390 1370 HOH HOH . H 5 HOH A 91 391 1251 HOH HOH . H 5 HOH A 92 392 1206 HOH HOH . H 5 HOH A 93 393 1274 HOH HOH . H 5 HOH A 94 394 1249 HOH HOH . H 5 HOH A 95 395 1226 HOH HOH . H 5 HOH A 96 396 1209 HOH HOH . H 5 HOH A 97 397 1294 HOH HOH . H 5 HOH A 98 398 1362 HOH HOH . H 5 HOH A 99 399 1308 HOH HOH . H 5 HOH A 100 400 1204 HOH HOH . H 5 HOH A 101 401 1221 HOH HOH . H 5 HOH A 102 402 1290 HOH HOH . H 5 HOH A 103 403 1208 HOH HOH . H 5 HOH A 104 404 1266 HOH HOH . H 5 HOH A 105 405 1230 HOH HOH . H 5 HOH A 106 406 1217 HOH HOH . H 5 HOH A 107 407 1401 HOH HOH . H 5 HOH A 108 408 1390 HOH HOH . H 5 HOH A 109 409 1210 HOH HOH . H 5 HOH A 110 410 1389 HOH HOH . H 5 HOH A 111 411 1316 HOH HOH . H 5 HOH A 112 412 1331 HOH HOH . H 5 HOH A 113 413 1375 HOH HOH . H 5 HOH A 114 414 1299 HOH HOH . H 5 HOH A 115 415 1223 HOH HOH . H 5 HOH A 116 416 1358 HOH HOH . H 5 HOH A 117 417 1253 HOH HOH . H 5 HOH A 118 418 1325 HOH HOH . H 5 HOH A 119 419 1352 HOH HOH . H 5 HOH A 120 420 1327 HOH HOH . H 5 HOH A 121 421 1264 HOH HOH . H 5 HOH A 122 422 1414 HOH HOH . H 5 HOH A 123 423 1256 HOH HOH . H 5 HOH A 124 424 1241 HOH HOH . H 5 HOH A 125 425 1396 HOH HOH . H 5 HOH A 126 426 1252 HOH HOH . H 5 HOH A 127 427 1287 HOH HOH . H 5 HOH A 128 428 1282 HOH HOH . H 5 HOH A 129 429 1337 HOH HOH . H 5 HOH A 130 430 1417 HOH HOH . H 5 HOH A 131 431 1271 HOH HOH . H 5 HOH A 132 432 1306 HOH HOH . H 5 HOH A 133 433 1318 HOH HOH . H 5 HOH A 134 434 1262 HOH HOH . H 5 HOH A 135 435 1275 HOH HOH . H 5 HOH A 136 436 1184 HOH HOH . H 5 HOH A 137 437 1214 HOH HOH . H 5 HOH A 138 438 1315 HOH HOH . H 5 HOH A 139 439 1192 HOH HOH . H 5 HOH A 140 440 1187 HOH HOH . H 5 HOH A 141 441 1361 HOH HOH . H 5 HOH A 142 442 1273 HOH HOH . H 5 HOH A 143 443 1314 HOH HOH . H 5 HOH A 144 444 1225 HOH HOH . H 5 HOH A 145 445 1423 HOH HOH . H 5 HOH A 146 446 1355 HOH HOH . H 5 HOH A 147 447 1408 HOH HOH . H 5 HOH A 148 448 1372 HOH HOH . H 5 HOH A 149 449 1365 HOH HOH . H 5 HOH A 150 450 1279 HOH HOH . H 5 HOH A 151 451 1340 HOH HOH . H 5 HOH A 152 452 1302 HOH HOH . H 5 HOH A 153 453 1354 HOH HOH . H 5 HOH A 154 454 1238 HOH HOH . H 5 HOH A 155 455 1276 HOH HOH . H 5 HOH A 156 456 1407 HOH HOH . H 5 HOH A 157 457 1278 HOH HOH . H 5 HOH A 158 458 1245 HOH HOH . H 5 HOH A 159 459 1291 HOH HOH . H 5 HOH A 160 460 1272 HOH HOH . H 5 HOH A 161 461 1280 HOH HOH . H 5 HOH A 162 462 1415 HOH HOH . H 5 HOH A 163 463 1388 HOH HOH . H 5 HOH A 164 464 1353 HOH HOH . H 5 HOH A 165 465 1432 HOH HOH . H 5 HOH A 166 466 1428 HOH HOH . H 5 HOH A 167 467 1330 HOH HOH . H 5 HOH A 168 468 1387 HOH HOH . H 5 HOH A 169 469 1342 HOH HOH . H 5 HOH A 170 470 1236 HOH HOH . H 5 HOH A 171 471 1198 HOH HOH . H 5 HOH A 172 472 1303 HOH HOH . H 5 HOH A 173 473 1377 HOH HOH . H 5 HOH A 174 474 1429 HOH HOH . H 5 HOH A 175 475 1360 HOH HOH . H 5 HOH A 176 476 1292 HOH HOH . H 5 HOH A 177 477 1383 HOH HOH . H 5 HOH A 178 478 1297 HOH HOH . H 5 HOH A 179 479 1385 HOH HOH . H 5 HOH A 180 480 1380 HOH HOH . H 5 HOH A 181 481 1334 HOH HOH . H 5 HOH A 182 482 1328 HOH HOH . H 5 HOH A 183 483 1359 HOH HOH . H 5 HOH A 184 484 1411 HOH HOH . H 5 HOH A 185 485 1323 HOH HOH . H 5 HOH A 186 486 1232 HOH HOH . H 5 HOH A 187 487 1293 HOH HOH . H 5 HOH A 188 488 1254 HOH HOH . H 5 HOH A 189 489 1324 HOH HOH . H 5 HOH A 190 490 1258 HOH HOH . H 5 HOH A 191 491 1418 HOH HOH . H 5 HOH A 192 492 1281 HOH HOH . H 5 HOH A 193 493 1384 HOH HOH . H 5 HOH A 194 494 1321 HOH HOH . H 5 HOH A 195 495 1312 HOH HOH . H 5 HOH A 196 496 1351 HOH HOH . H 5 HOH A 197 497 1357 HOH HOH . H 5 HOH A 198 498 1420 HOH HOH . H 5 HOH A 199 499 1320 HOH HOH . H 5 HOH A 200 500 1263 HOH HOH . H 5 HOH A 201 501 1270 HOH HOH . H 5 HOH A 202 502 1412 HOH HOH . H 5 HOH A 203 503 1394 HOH HOH . H 5 HOH A 204 504 1335 HOH HOH . H 5 HOH A 205 505 1300 HOH HOH . H 5 HOH A 206 506 1379 HOH HOH . H 5 HOH A 207 507 1285 HOH HOH . H 5 HOH A 208 508 1218 HOH HOH . H 5 HOH A 209 509 1393 HOH HOH . H 5 HOH A 210 510 1400 HOH HOH . H 5 HOH A 211 511 1363 HOH HOH . H 5 HOH A 212 512 1339 HOH HOH . H 5 HOH A 213 513 1317 HOH HOH . H 5 HOH A 214 514 1364 HOH HOH . H 5 HOH A 215 515 1348 HOH HOH . H 5 HOH A 216 516 1381 HOH HOH . H 5 HOH A 217 517 1439 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 4 -6.362 -60.331 11.594 1 35.98 ? C1 GOL 205 A 1 HETATM 2 O O1 GOL . . . F 4 -5.145 -60.538 12.235 1 27.3 ? O1 GOL 205 A 1 HETATM 3 C C2 GOL . . . F 4 -6.064 -60.157 10.095 1 60.07 ? C2 GOL 205 A 1 HETATM 4 O O2 GOL . . . F 4 -4.981 -60.925 9.684 1 51.36 ? O2 GOL 205 A 1 HETATM 5 C C3 GOL . . . F 4 -7.368 -60.577 9.399 1 45.86 ? C3 GOL 205 A 1 HETATM 6 O O3 GOL . . . F 4 -8.199 -59.464 9.367 1 31.45 ? O3 GOL 205 A 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #