data_9C20 # _model_server_result.job_id mw4T-lLChv2wZQGEO66nJw _model_server_result.datetime_utc '2024-11-28 14:23:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9c20 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":902}' # _entry.id 9C20 # _exptl.entry_id 9C20 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.307 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '9-O-acetyl-5-acetamido-3,5-dideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranosonic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9C20 _cell.length_a 171.037 _cell.length_b 171.037 _cell.length_c 93.296 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9C20 _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C13 H21 N O10' _chem_comp.formula_weight 351.307 _chem_comp.id 5N6 _chem_comp.mon_nstd_flag n _chem_comp.name '9-O-acetyl-5-acetamido-3,5-dideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranosonic acid' _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms '(2~{R},4~{S},5~{R},6~{R})-5-acetamido-6-[(1~{R},2~{R})-3-acetyloxy-1,2-bis(oxidanyl)propyl]-2,4-bis(oxidanyl)oxane-2-ca rboxylic acid;9-O-acetyl-5-acetamido-3,5-dideoxy-D-glycero-alpha-D-galacto-non-2-ulosonic acid;9-O-acetyl-5-acetamido-3,5-dideoxy-D-glycero-D-galacto-non-2-ulosonic acid;9-O-acetyl-5-acetamido-3,5-dideoxy-D-glycero-galacto-non-2-ulosonic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3 C2 5N6 sing 1 n n C3 C4 5N6 sing 2 n n C2 C1 5N6 sing 3 n n C2 O6 5N6 sing 4 n n O1A C1 5N6 doub 5 n n C1 O1B 5N6 sing 6 n n O4 C4 5N6 sing 7 n n O6 C6 5N6 sing 8 n n C4 C5 5N6 sing 9 n n C5 C6 5N6 sing 10 n n C5 N5 5N6 sing 11 n n C6 C7 5N6 sing 12 n n C8 O8 5N6 sing 13 n n C8 C7 5N6 sing 14 n n C8 C9 5N6 sing 15 n n N5 C10 5N6 sing 16 n n C7 O7 5N6 sing 17 n n C9 O9 5N6 sing 18 n n C10 O10 5N6 doub 19 n n C10 C11 5N6 sing 20 n n O9 CAG 5N6 sing 21 n n CAG OBJ 5N6 doub 22 n n CAG CAF 5N6 sing 23 n n CAF H1 5N6 sing 24 n n CAF H2 5N6 sing 25 n n CAF H3 5N6 sing 26 n n C11 H111 5N6 sing 27 n n C11 H113 5N6 sing 28 n n C11 H112 5N6 sing 29 n n C9 H92 5N6 sing 30 n n C9 H91 5N6 sing 31 n n C8 H8 5N6 sing 32 n n C7 H7 5N6 sing 33 n n N5 HN5 5N6 sing 34 n n C5 H5 5N6 sing 35 n n C4 H4 5N6 sing 36 n n C6 H6 5N6 sing 37 n n C3 H32 5N6 sing 38 n n C3 H31 5N6 sing 39 n n O7 HO7 5N6 sing 40 n n O8 HO8 5N6 sing 41 n n O4 HO4 5N6 sing 42 n n O1B HO1B 5N6 sing 43 n n C2 O2 5N6 sing 44 n n O2 HO2 5N6 sing 45 n n # _pdbx_chem_comp_identifier.comp_id 5N6 _pdbx_chem_comp_identifier.identifier a-D-Neup5Ac9Ac _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 9C20 _atom_sites.fract_transf_matrix[1][1] 0.005847 _atom_sites.fract_transf_matrix[1][2] 0.003376 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006751 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010719 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 901 1 EDO EDO . C 3 5N6 A 1 902 900 5N6 5N6 . D 4 HOH A 1 1001 9 HOH HOH . D 4 HOH A 2 1002 185 HOH HOH . D 4 HOH A 3 1003 137 HOH HOH . D 4 HOH A 4 1004 199 HOH HOH . D 4 HOH A 5 1005 74 HOH HOH . D 4 HOH A 6 1006 95 HOH HOH . D 4 HOH A 7 1007 78 HOH HOH . D 4 HOH A 8 1008 158 HOH HOH . D 4 HOH A 9 1009 80 HOH HOH . D 4 HOH A 10 1010 167 HOH HOH . D 4 HOH A 11 1011 65 HOH HOH . D 4 HOH A 12 1012 116 HOH HOH . D 4 HOH A 13 1013 136 HOH HOH . D 4 HOH A 14 1014 111 HOH HOH . D 4 HOH A 15 1015 31 HOH HOH . D 4 HOH A 16 1016 164 HOH HOH . D 4 HOH A 17 1017 147 HOH HOH . D 4 HOH A 18 1018 23 HOH HOH . D 4 HOH A 19 1019 195 HOH HOH . D 4 HOH A 20 1020 206 HOH HOH . D 4 HOH A 21 1021 126 HOH HOH . D 4 HOH A 22 1022 115 HOH HOH . D 4 HOH A 23 1023 88 HOH HOH . D 4 HOH A 24 1024 161 HOH HOH . D 4 HOH A 25 1025 152 HOH HOH . D 4 HOH A 26 1026 55 HOH HOH . D 4 HOH A 27 1027 165 HOH HOH . D 4 HOH A 28 1028 174 HOH HOH . D 4 HOH A 29 1029 81 HOH HOH . D 4 HOH A 30 1030 20 HOH HOH . D 4 HOH A 31 1031 17 HOH HOH . D 4 HOH A 32 1032 66 HOH HOH . D 4 HOH A 33 1033 166 HOH HOH . D 4 HOH A 34 1034 25 HOH HOH . D 4 HOH A 35 1035 4 HOH HOH . D 4 HOH A 36 1036 56 HOH HOH . D 4 HOH A 37 1037 149 HOH HOH . D 4 HOH A 38 1038 142 HOH HOH . D 4 HOH A 39 1039 50 HOH HOH . D 4 HOH A 40 1040 106 HOH HOH . D 4 HOH A 41 1041 5 HOH HOH . D 4 HOH A 42 1042 107 HOH HOH . D 4 HOH A 43 1043 34 HOH HOH . D 4 HOH A 44 1044 94 HOH HOH . D 4 HOH A 45 1045 46 HOH HOH . D 4 HOH A 46 1046 90 HOH HOH . D 4 HOH A 47 1047 27 HOH HOH . D 4 HOH A 48 1048 48 HOH HOH . D 4 HOH A 49 1049 97 HOH HOH . D 4 HOH A 50 1050 171 HOH HOH . D 4 HOH A 51 1051 77 HOH HOH . D 4 HOH A 52 1052 38 HOH HOH . D 4 HOH A 53 1053 178 HOH HOH . D 4 HOH A 54 1054 11 HOH HOH . D 4 HOH A 55 1055 82 HOH HOH . D 4 HOH A 56 1056 12 HOH HOH . D 4 HOH A 57 1057 22 HOH HOH . D 4 HOH A 58 1058 54 HOH HOH . D 4 HOH A 59 1059 14 HOH HOH . D 4 HOH A 60 1060 128 HOH HOH . D 4 HOH A 61 1061 92 HOH HOH . D 4 HOH A 62 1062 157 HOH HOH . D 4 HOH A 63 1063 61 HOH HOH . D 4 HOH A 64 1064 40 HOH HOH . D 4 HOH A 65 1065 16 HOH HOH . D 4 HOH A 66 1066 18 HOH HOH . D 4 HOH A 67 1067 79 HOH HOH . D 4 HOH A 68 1068 30 HOH HOH . D 4 HOH A 69 1069 2 HOH HOH . D 4 HOH A 70 1070 52 HOH HOH . D 4 HOH A 71 1071 76 HOH HOH . D 4 HOH A 72 1072 29 HOH HOH . D 4 HOH A 73 1073 160 HOH HOH . D 4 HOH A 74 1074 42 HOH HOH . D 4 HOH A 75 1075 26 HOH HOH . D 4 HOH A 76 1076 8 HOH HOH . D 4 HOH A 77 1077 13 HOH HOH . D 4 HOH A 78 1078 71 HOH HOH . D 4 HOH A 79 1079 7 HOH HOH . D 4 HOH A 80 1080 144 HOH HOH . D 4 HOH A 81 1081 62 HOH HOH . D 4 HOH A 82 1082 43 HOH HOH . D 4 HOH A 83 1083 45 HOH HOH . D 4 HOH A 84 1084 203 HOH HOH . D 4 HOH A 85 1085 68 HOH HOH . D 4 HOH A 86 1086 35 HOH HOH . D 4 HOH A 87 1087 123 HOH HOH . D 4 HOH A 88 1088 99 HOH HOH . D 4 HOH A 89 1089 32 HOH HOH . D 4 HOH A 90 1090 1 HOH HOH . D 4 HOH A 91 1091 183 HOH HOH . D 4 HOH A 92 1092 91 HOH HOH . D 4 HOH A 93 1093 140 HOH HOH . D 4 HOH A 94 1094 192 HOH HOH . D 4 HOH A 95 1095 64 HOH HOH . D 4 HOH A 96 1096 58 HOH HOH . D 4 HOH A 97 1097 10 HOH HOH . D 4 HOH A 98 1098 132 HOH HOH . D 4 HOH A 99 1099 125 HOH HOH . D 4 HOH A 100 1100 121 HOH HOH . D 4 HOH A 101 1101 6 HOH HOH . D 4 HOH A 102 1102 150 HOH HOH . D 4 HOH A 103 1103 151 HOH HOH . D 4 HOH A 104 1104 36 HOH HOH . D 4 HOH A 105 1105 146 HOH HOH . D 4 HOH A 106 1106 83 HOH HOH . D 4 HOH A 107 1107 15 HOH HOH . D 4 HOH A 108 1108 153 HOH HOH . D 4 HOH A 109 1109 163 HOH HOH . D 4 HOH A 110 1110 72 HOH HOH . D 4 HOH A 111 1111 98 HOH HOH . D 4 HOH A 112 1112 41 HOH HOH . D 4 HOH A 113 1113 21 HOH HOH . D 4 HOH A 114 1114 138 HOH HOH . D 4 HOH A 115 1115 67 HOH HOH . D 4 HOH A 116 1116 148 HOH HOH . D 4 HOH A 117 1117 3 HOH HOH . D 4 HOH A 118 1118 110 HOH HOH . D 4 HOH A 119 1119 85 HOH HOH . D 4 HOH A 120 1120 143 HOH HOH . D 4 HOH A 121 1121 57 HOH HOH . D 4 HOH A 122 1122 124 HOH HOH . D 4 HOH A 123 1123 117 HOH HOH . D 4 HOH A 124 1124 28 HOH HOH . D 4 HOH A 125 1125 59 HOH HOH . D 4 HOH A 126 1126 207 HOH HOH . D 4 HOH A 127 1127 162 HOH HOH . D 4 HOH A 128 1128 193 HOH HOH . D 4 HOH A 129 1129 70 HOH HOH . D 4 HOH A 130 1130 189 HOH HOH . D 4 HOH A 131 1131 131 HOH HOH . D 4 HOH A 132 1132 24 HOH HOH . D 4 HOH A 133 1133 37 HOH HOH . D 4 HOH A 134 1134 101 HOH HOH . D 4 HOH A 135 1135 104 HOH HOH . D 4 HOH A 136 1136 109 HOH HOH . D 4 HOH A 137 1137 129 HOH HOH . D 4 HOH A 138 1138 187 HOH HOH . D 4 HOH A 139 1139 103 HOH HOH . D 4 HOH A 140 1140 96 HOH HOH . D 4 HOH A 141 1141 49 HOH HOH . D 4 HOH A 142 1142 135 HOH HOH . D 4 HOH A 143 1143 93 HOH HOH . D 4 HOH A 144 1144 154 HOH HOH . D 4 HOH A 145 1145 172 HOH HOH . D 4 HOH A 146 1146 177 HOH HOH . D 4 HOH A 147 1147 181 HOH HOH . D 4 HOH A 148 1148 84 HOH HOH . D 4 HOH A 149 1149 120 HOH HOH . D 4 HOH A 150 1150 86 HOH HOH . D 4 HOH A 151 1151 119 HOH HOH . D 4 HOH A 152 1152 19 HOH HOH . D 4 HOH A 153 1153 69 HOH HOH . D 4 HOH A 154 1154 134 HOH HOH . D 4 HOH A 155 1155 169 HOH HOH . D 4 HOH A 156 1156 211 HOH HOH . D 4 HOH A 157 1157 105 HOH HOH . D 4 HOH A 158 1158 122 HOH HOH . D 4 HOH A 159 1159 60 HOH HOH . D 4 HOH A 160 1160 155 HOH HOH . D 4 HOH A 161 1161 208 HOH HOH . D 4 HOH A 162 1162 102 HOH HOH . D 4 HOH A 163 1163 188 HOH HOH . D 4 HOH A 164 1164 47 HOH HOH . D 4 HOH A 165 1165 205 HOH HOH . D 4 HOH A 166 1166 186 HOH HOH . D 4 HOH A 167 1167 156 HOH HOH . D 4 HOH A 168 1168 194 HOH HOH . D 4 HOH A 169 1169 53 HOH HOH . D 4 HOH A 170 1170 39 HOH HOH . D 4 HOH A 171 1171 175 HOH HOH . D 4 HOH A 172 1172 100 HOH HOH . D 4 HOH A 173 1173 118 HOH HOH . D 4 HOH A 174 1174 179 HOH HOH . D 4 HOH A 175 1175 44 HOH HOH . D 4 HOH A 176 1176 200 HOH HOH . D 4 HOH A 177 1177 133 HOH HOH . D 4 HOH A 178 1178 130 HOH HOH . D 4 HOH A 179 1179 184 HOH HOH . D 4 HOH A 180 1180 176 HOH HOH . D 4 HOH A 181 1181 33 HOH HOH . D 4 HOH A 182 1182 139 HOH HOH . D 4 HOH A 183 1183 89 HOH HOH . D 4 HOH A 184 1184 196 HOH HOH . D 4 HOH A 185 1185 209 HOH HOH . D 4 HOH A 186 1186 159 HOH HOH . D 4 HOH A 187 1187 141 HOH HOH . D 4 HOH A 188 1188 190 HOH HOH . D 4 HOH A 189 1189 168 HOH HOH . D 4 HOH A 190 1190 212 HOH HOH . D 4 HOH A 191 1191 197 HOH HOH . D 4 HOH A 192 1192 145 HOH HOH . D 4 HOH A 193 1193 113 HOH HOH . D 4 HOH A 194 1194 173 HOH HOH . D 4 HOH A 195 1195 198 HOH HOH . D 4 HOH A 196 1196 73 HOH HOH . D 4 HOH A 197 1197 170 HOH HOH . D 4 HOH A 198 1198 112 HOH HOH . D 4 HOH A 199 1199 202 HOH HOH . D 4 HOH A 200 1200 210 HOH HOH . D 4 HOH A 201 1201 182 HOH HOH . D 4 HOH A 202 1202 63 HOH HOH . D 4 HOH A 203 1203 114 HOH HOH . D 4 HOH A 204 1204 75 HOH HOH . D 4 HOH A 205 1205 180 HOH HOH . D 4 HOH A 206 1206 87 HOH HOH . D 4 HOH A 207 1207 191 HOH HOH . D 4 HOH A 208 1208 204 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAF 5N6 . . . C 3 -82.336 30.044 -13.698 1 85.17 0 CAF 5N6 902 A 1 HETATM 2 C CAG 5N6 . . . C 3 -82.338 29.288 -15.002 1 91.56 0 CAG 5N6 902 A 1 HETATM 3 C C11 5N6 . . . C 3 -78.378 30.823 -9.971 1 59.16 0 C11 5N6 902 A 1 HETATM 4 C C10 5N6 . . . C 3 -77.031 30.248 -10.282 1 56.37 0 C10 5N6 902 A 1 HETATM 5 C C9 5N6 . . . C 3 -79.909 29.434 -15.067 1 61.81 0 C9 5N6 902 A 1 HETATM 6 C C8 5N6 . . . C 3 -79.404 28.298 -14.197 1 67.01 0 C8 5N6 902 A 1 HETATM 7 C C7 5N6 . . . C 3 -78.973 28.763 -12.804 1 69.6 0 C7 5N6 902 A 1 HETATM 8 N N5 5N6 . . . C 3 -76.975 28.94 -10.579 1 62.96 0 N5 5N6 902 A 1 HETATM 9 C C5 5N6 . . . C 3 -78.102 28.007 -10.502 1 66.9 0 C5 5N6 902 A 1 HETATM 10 C C4 5N6 . . . C 3 -77.776 26.733 -9.72 1 56.1 0 C4 5N6 902 A 1 HETATM 11 C C6 5N6 . . . C 3 -78.648 27.595 -11.879 1 68.78 0 C6 5N6 902 A 1 HETATM 12 C C3 5N6 . . . C 3 -79.05 25.916 -9.483 1 56.58 0 C3 5N6 902 A 1 HETATM 13 C C2 5N6 . . . C 3 -80.2 26.126 -10.481 1 54.06 0 C2 5N6 902 A 1 HETATM 14 C C1 5N6 . . . C 3 -80.991 24.864 -10.804 1 35.16 0 C1 5N6 902 A 1 HETATM 15 O OBJ 5N6 . . . C 3 -83.344 28.888 -15.533 1 98.54 0 OBJ 5N6 902 A 1 HETATM 16 O O9 5N6 . . . C 3 -81.175 29.057 -15.661 1 71.96 0 O9 5N6 902 A 1 HETATM 17 O O10 5N6 . . . C 3 -76.024 30.948 -10.259 1 51.75 0 O10 5N6 902 A 1 HETATM 18 O O7 5N6 . . . C 3 -79.976 29.624 -12.248 1 73.27 0 O7 5N6 902 A 1 HETATM 19 O O8 5N6 . . . C 3 -78.328 27.543 -14.81 1 52.22 0 O8 5N6 902 A 1 HETATM 20 O O4 5N6 . . . C 3 -77.036 27.02 -8.526 1 40.9 0 O4 5N6 902 A 1 HETATM 21 O O6 5N6 . . . C 3 -79.845 26.777 -11.727 1 74.53 0 O6 5N6 902 A 1 HETATM 22 O O1B 5N6 . . . C 3 -81.413 24.697 -11.86 1 28.26 0 O1B 5N6 902 A 1 HETATM 23 O O1A 5N6 . . . C 3 -81.203 24.077 -9.977 1 33.4 0 O1A 5N6 902 A 1 HETATM 24 O O2 5N6 . . . C 3 -81.213 26.891 -9.914 1 60.6 0 O2 5N6 902 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 24 #