data_9C2A # _model_server_result.job_id rvbuZXLJB_XrD08pfKKGdA _model_server_result.datetime_utc '2024-10-10 00:27:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9c2a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":401}' # _entry.id 9C2A # _exptl.entry_id 9C2A _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9C2A _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9C2A _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 I N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 Q N N ? 3 R N N ? 3 S N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n D NAG 1 D 1 NAG A 410 NAG 2 n D NAG 2 D 2 NAG A 414 NAG 2 n E NAG 1 E 1 NAG B 410 NAG 2 n E NAG 2 E 2 NAG B 414 NAG 2 n F NAG 1 F 1 NAG C 410 NAG 2 n F NAG 2 F 2 NAG C 414 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 217 A CYS 217 1_555 A SG CYS 227 A CYS 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 261 A CYS 261 1_555 A SG CYS 270 A CYS 270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf3 B SG CYS 217 B CYS 217 1_555 B SG CYS 227 B CYS 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 B SG CYS 261 B CYS 261 1_555 B SG CYS 270 B CYS 270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf5 C SG CYS 217 C CYS 217 1_555 C SG CYS 227 C CYS 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 C SG CYS 261 C CYS 261 1_555 C SG CYS 270 C CYS 270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? covale ? covale1 A ND2 ASN 153 A ASN 153 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 A ND2 ASN 184 A ASN 184 1_555 H C1 NAG . A NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale3 A ND2 ASN 242 A ASN 242 1_555 G C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale4 A ND2 ASN 300 A ASN 300 1_555 I C1 NAG . A NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale5 B ND2 ASN 153 B ASN 153 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale6 B ND2 ASN 184 B ASN 184 1_555 M C1 NAG . B NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale7 B ND2 ASN 242 B ASN 242 1_555 L C1 NAG . B NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale8 B ND2 ASN 300 B ASN 300 1_555 N C1 NAG . B NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale9 C ND2 ASN 153 C ASN 153 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale10 C ND2 ASN 184 C ASN 184 1_555 R C1 NAG . C NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale11 C ND2 ASN 242 C ASN 242 1_555 Q C1 NAG . C NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale12 C ND2 ASN 300 C ASN 300 1_555 S C1 NAG . C NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale13 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale14 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale15 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 9C2A _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 NAG A 1 401 411 NAG NAG . H 3 NAG A 1 402 413 NAG NAG . I 3 NAG A 1 403 415 NAG NAG . J 4 Y01 A 1 404 416 Y01 Y01 . K 4 Y01 A 1 405 417 Y01 Y01 . L 3 NAG B 1 401 411 NAG NAG . M 3 NAG B 1 402 413 NAG NAG . N 3 NAG B 1 403 415 NAG NAG . O 4 Y01 B 1 404 416 Y01 Y01 . P 4 Y01 B 1 405 417 Y01 Y01 . Q 3 NAG C 1 401 411 NAG NAG . R 3 NAG C 1 402 413 NAG NAG . S 3 NAG C 1 403 415 NAG NAG . T 4 Y01 C 1 404 416 Y01 Y01 . U 4 Y01 C 1 405 417 Y01 Y01 . V 5 HOH A 1 501 25 HOH HOH . V 5 HOH A 2 502 22 HOH HOH . V 5 HOH A 3 503 58 HOH HOH . V 5 HOH A 4 504 67 HOH HOH . V 5 HOH A 5 505 33 HOH HOH . V 5 HOH A 6 506 71 HOH HOH . V 5 HOH A 7 507 20 HOH HOH . V 5 HOH A 8 508 55 HOH HOH . V 5 HOH A 9 509 59 HOH HOH . V 5 HOH A 10 510 91 HOH HOH . V 5 HOH A 11 511 52 HOH HOH . V 5 HOH A 12 512 1 HOH HOH . V 5 HOH A 13 513 81 HOH HOH . V 5 HOH A 14 514 94 HOH HOH . V 5 HOH A 15 515 42 HOH HOH . V 5 HOH A 16 516 5 HOH HOH . V 5 HOH A 17 517 84 HOH HOH . V 5 HOH A 18 518 63 HOH HOH . V 5 HOH A 19 519 35 HOH HOH . V 5 HOH A 20 520 102 HOH HOH . V 5 HOH A 21 521 15 HOH HOH . V 5 HOH A 22 522 30 HOH HOH . V 5 HOH A 23 523 74 HOH HOH . V 5 HOH A 24 524 96 HOH HOH . V 5 HOH A 25 525 38 HOH HOH . V 5 HOH A 26 526 70 HOH HOH . V 5 HOH A 27 527 48 HOH HOH . V 5 HOH A 28 528 77 HOH HOH . V 5 HOH A 29 529 46 HOH HOH . V 5 HOH A 30 530 87 HOH HOH . V 5 HOH A 31 531 4 HOH HOH . V 5 HOH A 32 532 12 HOH HOH . V 5 HOH A 33 533 29 HOH HOH . W 5 HOH B 1 501 99 HOH HOH . W 5 HOH B 2 502 26 HOH HOH . W 5 HOH B 3 503 23 HOH HOH . W 5 HOH B 4 504 56 HOH HOH . W 5 HOH B 5 505 65 HOH HOH . W 5 HOH B 6 506 34 HOH HOH . W 5 HOH B 7 507 72 HOH HOH . W 5 HOH B 8 508 18 HOH HOH . W 5 HOH B 9 509 53 HOH HOH . W 5 HOH B 10 510 60 HOH HOH . W 5 HOH B 11 511 89 HOH HOH . W 5 HOH B 12 512 50 HOH HOH . W 5 HOH B 13 513 9 HOH HOH . W 5 HOH B 14 514 82 HOH HOH . W 5 HOH B 15 515 92 HOH HOH . W 5 HOH B 16 516 43 HOH HOH . W 5 HOH B 17 517 85 HOH HOH . W 5 HOH B 18 518 64 HOH HOH . W 5 HOH B 19 519 36 HOH HOH . W 5 HOH B 20 520 8 HOH HOH . W 5 HOH B 21 521 16 HOH HOH . W 5 HOH B 22 522 31 HOH HOH . W 5 HOH B 23 523 75 HOH HOH . W 5 HOH B 24 524 97 HOH HOH . W 5 HOH B 25 525 39 HOH HOH . W 5 HOH B 26 526 68 HOH HOH . W 5 HOH B 27 527 78 HOH HOH . W 5 HOH B 28 528 49 HOH HOH . W 5 HOH B 29 529 44 HOH HOH . W 5 HOH B 30 530 88 HOH HOH . W 5 HOH B 31 531 6 HOH HOH . W 5 HOH B 32 532 13 HOH HOH . W 5 HOH B 33 533 10 HOH HOH . W 5 HOH B 34 534 27 HOH HOH . X 5 HOH C 1 501 100 HOH HOH . X 5 HOH C 2 502 98 HOH HOH . X 5 HOH C 3 503 24 HOH HOH . X 5 HOH C 4 504 21 HOH HOH . X 5 HOH C 5 505 57 HOH HOH . X 5 HOH C 6 506 66 HOH HOH . X 5 HOH C 7 507 32 HOH HOH . X 5 HOH C 8 508 73 HOH HOH . X 5 HOH C 9 509 19 HOH HOH . X 5 HOH C 10 510 54 HOH HOH . X 5 HOH C 11 511 61 HOH HOH . X 5 HOH C 12 512 90 HOH HOH . X 5 HOH C 13 513 51 HOH HOH . X 5 HOH C 14 514 80 HOH HOH . X 5 HOH C 15 515 93 HOH HOH . X 5 HOH C 16 516 41 HOH HOH . X 5 HOH C 17 517 11 HOH HOH . X 5 HOH C 18 518 83 HOH HOH . X 5 HOH C 19 519 62 HOH HOH . X 5 HOH C 20 520 37 HOH HOH . X 5 HOH C 21 521 2 HOH HOH . X 5 HOH C 22 522 101 HOH HOH . X 5 HOH C 23 523 17 HOH HOH . X 5 HOH C 24 524 7 HOH HOH . X 5 HOH C 25 525 76 HOH HOH . X 5 HOH C 26 526 95 HOH HOH . X 5 HOH C 27 527 40 HOH HOH . X 5 HOH C 28 528 69 HOH HOH . X 5 HOH C 29 529 79 HOH HOH . X 5 HOH C 30 530 45 HOH HOH . X 5 HOH C 31 531 86 HOH HOH . X 5 HOH C 32 532 47 HOH HOH . X 5 HOH C 33 533 3 HOH HOH . X 5 HOH C 34 534 14 HOH HOH . X 5 HOH C 35 535 28 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . L 3 108.488 106.345 100.194 1 74.26 ? C1 NAG 401 B 1 HETATM 2 C C2 NAG . . . L 3 107.864 106.375 98.802 1 74.26 ? C2 NAG 401 B 1 HETATM 3 C C3 NAG . . . L 3 107.511 104.959 98.353 1 74.26 ? C3 NAG 401 B 1 HETATM 4 C C4 NAG . . . L 3 108.722 104.046 98.472 1 74.26 ? C4 NAG 401 B 1 HETATM 5 C C5 NAG . . . L 3 109.307 104.126 99.878 1 74.26 ? C5 NAG 401 B 1 HETATM 6 C C6 NAG . . . L 3 110.584 103.334 100.036 1 74.26 ? C6 NAG 401 B 1 HETATM 7 C C7 NAG . . . L 3 105.984 107.486 97.676 1 74.26 ? C7 NAG 401 B 1 HETATM 8 C C8 NAG . . . L 3 104.8 108.388 97.846 1 74.26 ? C8 NAG 401 B 1 HETATM 9 N N2 NAG . . . L 3 106.687 107.227 98.784 1 74.26 ? N2 NAG 401 B 1 HETATM 10 O O3 NAG . . . L 3 107.056 104.982 97.005 1 74.26 ? O3 NAG 401 B 1 HETATM 11 O O4 NAG . . . L 3 108.348 102.701 98.195 1 74.26 ? O4 NAG 401 B 1 HETATM 12 O O5 NAG . . . L 3 109.623 105.488 100.192 1 74.26 ? O5 NAG 401 B 1 HETATM 13 O O6 NAG . . . L 3 111.177 103.557 101.308 1 74.26 ? O6 NAG 401 B 1 HETATM 14 O O7 NAG . . . L 3 106.289 107.01 96.588 1 74.26 ? O7 NAG 401 B 1 # _model_server_stats.io_time_ms 132 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #