data_9C2C # _model_server_result.job_id hL_OHFEYjh7NiPuNUKyo-g _model_server_result.datetime_utc '2024-12-02 21:32:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9c2c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":505}' # _entry.id 9C2C # _exptl.entry_id 9C2C _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9C2C _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9C2C _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 117 A CYS 117 1_555 A SG CYS 165 A CYS 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 217 A CYS 217 1_555 A SG CYS 227 A CYS 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf3 A SG CYS 261 A CYS 261 1_555 A SG CYS 270 A CYS 270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 B SG CYS 117 C CYS 117 1_555 B SG CYS 165 C CYS 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 B SG CYS 217 C CYS 217 1_555 B SG CYS 227 C CYS 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf6 B SG CYS 261 C CYS 261 1_555 B SG CYS 270 C CYS 270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf7 C SG CYS 117 B CYS 117 1_555 C SG CYS 165 B CYS 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf8 C SG CYS 217 B CYS 217 1_555 C SG CYS 227 B CYS 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf9 C SG CYS 261 B CYS 261 1_555 C SG CYS 270 B CYS 270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 A ND2 ASN 153 A ASN 153 1_555 H C1 NAG . A NAG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale2 A ND2 ASN 184 A ASN 184 1_555 E C1 NAG . A NAG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale3 A ND2 ASN 242 A ASN 242 1_555 D C1 NAG . A NAG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale4 B ND2 ASN 153 C ASN 153 1_555 M C1 NAG . C NAG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale5 B ND2 ASN 184 C ASN 184 1_555 J C1 NAG . C NAG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale6 B ND2 ASN 242 C ASN 242 1_555 I C1 NAG . C NAG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale7 C ND2 ASN 153 B ASN 153 1_555 R C1 NAG . B NAG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale8 C ND2 ASN 184 B ASN 184 1_555 O C1 NAG . B NAG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale9 C ND2 ASN 242 B ASN 242 1_555 N C1 NAG . B NAG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 356 n n C1 O1 NAG sing 357 n n C1 O5 NAG sing 358 n n C1 H1 NAG sing 359 n n C2 C3 NAG sing 360 n n C2 N2 NAG sing 361 n n C2 H2 NAG sing 362 n n C3 C4 NAG sing 363 n n C3 O3 NAG sing 364 n n C3 H3 NAG sing 365 n n C4 C5 NAG sing 366 n n C4 O4 NAG sing 367 n n C4 H4 NAG sing 368 n n C5 C6 NAG sing 369 n n C5 O5 NAG sing 370 n n C5 H5 NAG sing 371 n n C6 O6 NAG sing 372 n n C6 H61 NAG sing 373 n n C6 H62 NAG sing 374 n n C7 C8 NAG sing 375 n n C7 N2 NAG sing 376 n n C7 O7 NAG doub 377 n n C8 H81 NAG sing 378 n n C8 H82 NAG sing 379 n n C8 H83 NAG sing 380 n n N2 HN2 NAG sing 381 n n O1 HO1 NAG sing 382 n n O3 HO3 NAG sing 383 n n O4 HO4 NAG sing 384 n n O6 HO6 NAG sing 385 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 9C2C _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 NAG A 1 507 355 NAG NAG . E 2 NAG A 1 506 357 NAG NAG . F 3 A1ALI A 1 500 400 A1ALI L01 . G 3 A1ALI A 1 501 401 A1ALI L01 . H 2 NAG A 1 505 402 NAG NAG . I 2 NAG C 1 507 355 NAG NAG . J 2 NAG C 1 506 357 NAG NAG . K 3 A1ALI C 1 500 400 A1ALI L01 . L 3 A1ALI C 1 501 401 A1ALI L01 . M 2 NAG C 1 505 402 NAG NAG . N 2 NAG B 1 507 355 NAG NAG . O 2 NAG B 1 506 357 NAG NAG . P 3 A1ALI B 1 500 400 A1ALI L01 . Q 3 A1ALI B 1 501 401 A1ALI L01 . R 2 NAG B 1 505 402 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . R 2 96.606 127.228 75.499 1 82.78 ? C1 NAG 505 B 1 HETATM 2 C C2 NAG . . . R 2 96.02 125.841 75.73 1 82.78 ? C2 NAG 505 B 1 HETATM 3 C C3 NAG . . . R 2 94.798 125.932 76.638 1 82.78 ? C3 NAG 505 B 1 HETATM 4 C C4 NAG . . . R 2 95.155 126.654 77.93 1 82.78 ? C4 NAG 505 B 1 HETATM 5 C C5 NAG . . . R 2 95.8 128.003 77.623 1 82.78 ? C5 NAG 505 B 1 HETATM 6 C C6 NAG . . . R 2 96.298 128.713 78.86 1 82.78 ? C6 NAG 505 B 1 HETATM 7 C C7 NAG . . . R 2 96.291 124.109 74.019 1 82.78 ? C7 NAG 505 B 1 HETATM 8 C C8 NAG . . . R 2 95.811 123.58 72.701 1 82.78 ? C8 NAG 505 B 1 HETATM 9 N N2 NAG . . . R 2 95.674 125.205 74.472 1 82.78 ? N2 NAG 505 B 1 HETATM 10 O O3 NAG . . . R 2 94.325 124.622 76.932 1 82.78 ? O3 NAG 505 B 1 HETATM 11 O O4 NAG . . . R 2 93.983 126.86 78.71 1 82.78 ? O4 NAG 505 B 1 HETATM 12 O O5 NAG . . . R 2 96.934 127.826 76.76 1 82.78 ? O5 NAG 505 B 1 HETATM 13 O O6 NAG . . . R 2 95.228 129.066 79.726 1 82.78 ? O6 NAG 505 B 1 HETATM 14 O O7 NAG . . . R 2 97.198 123.57 74.645 1 82.78 ? O7 NAG 505 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #