data_9C2C
#
_model_server_result.job_id            VaxpSnJFA0lxZcyXJYlY8w 
_model_server_result.datetime_utc      '2024-12-02 21:26:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9c2c 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":506}' 
#
_entry.id    9C2C 
#
_exptl.entry_id    9C2C 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9C2C 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9C2C 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 E N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 117 A CYS 117 1_555 A SG CYS 165 A CYS 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf2 A SG CYS 217 A CYS 217 1_555 A SG CYS 227 A CYS 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf3 A SG CYS 261 A CYS 261 1_555 A SG CYS 270 A CYS 270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf4 B SG CYS 117 C CYS 117 1_555 B SG CYS 165 C CYS 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf5 B SG CYS 217 C CYS 217 1_555 B SG CYS 227 C CYS 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf6 B SG CYS 261 C CYS 261 1_555 B SG CYS 270 C CYS 270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf7 C SG CYS 117 B CYS 117 1_555 C SG CYS 165 B CYS 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf8 C SG CYS 217 B CYS 217 1_555 C SG CYS 227 B CYS 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf9 C SG CYS 261 B CYS 261 1_555 C SG CYS 270 B CYS 270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
covale ? covale1 A ND2 ASN 153 A ASN 153 1_555 H C1 NAG . A NAG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale2 A ND2 ASN 184 A ASN 184 1_555 E C1 NAG . A NAG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? 
covale ? covale3 A ND2 ASN 242 A ASN 242 1_555 D C1 NAG . A NAG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
covale ? covale4 B ND2 ASN 153 C ASN 153 1_555 M C1 NAG . C NAG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale5 B ND2 ASN 184 C ASN 184 1_555 J C1 NAG . C NAG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? 
covale ? covale6 B ND2 ASN 242 C ASN 242 1_555 I C1 NAG . C NAG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
covale ? covale7 C ND2 ASN 153 B ASN 153 1_555 R C1 NAG . B NAG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale8 C ND2 ASN 184 B ASN 184 1_555 O C1 NAG . B NAG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? 
covale ? covale9 C ND2 ASN 242 B ASN 242 1_555 N C1 NAG . B NAG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 356 n n 
C1 O1 NAG sing 357 n n 
C1 O5 NAG sing 358 n n 
C1 H1 NAG sing 359 n n 
C2 C3 NAG sing 360 n n 
C2 N2 NAG sing 361 n n 
C2 H2 NAG sing 362 n n 
C3 C4 NAG sing 363 n n 
C3 O3 NAG sing 364 n n 
C3 H3 NAG sing 365 n n 
C4 C5 NAG sing 366 n n 
C4 O4 NAG sing 367 n n 
C4 H4 NAG sing 368 n n 
C5 C6 NAG sing 369 n n 
C5 O5 NAG sing 370 n n 
C5 H5 NAG sing 371 n n 
C6 O6 NAG sing 372 n n 
C6 H61 NAG sing 373 n n 
C6 H62 NAG sing 374 n n 
C7 C8 NAG sing 375 n n 
C7 N2 NAG sing 376 n n 
C7 O7 NAG doub 377 n n 
C8 H81 NAG sing 378 n n 
C8 H82 NAG sing 379 n n 
C8 H83 NAG sing 380 n n 
N2 HN2 NAG sing 381 n n 
O1 HO1 NAG sing 382 n n 
O3 HO3 NAG sing 383 n n 
O4 HO4 NAG sing 384 n n 
O6 HO6 NAG sing 385 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     9C2C 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 NAG A 1 507 355 NAG NAG . 
E 2 NAG A 1 506 357 NAG NAG . 
F 3 A1ALI A 1 500 400 A1ALI L01 . 
G 3 A1ALI A 1 501 401 A1ALI L01 . 
H 2 NAG A 1 505 402 NAG NAG . 
I 2 NAG C 1 507 355 NAG NAG . 
J 2 NAG C 1 506 357 NAG NAG . 
K 3 A1ALI C 1 500 400 A1ALI L01 . 
L 3 A1ALI C 1 501 401 A1ALI L01 . 
M 2 NAG C 1 505 402 NAG NAG . 
N 2 NAG B 1 507 355 NAG NAG . 
O 2 NAG B 1 506 357 NAG NAG . 
P 3 A1ALI B 1 500 400 A1ALI L01 . 
Q 3 A1ALI B 1 501 401 A1ALI L01 . 
R 2 NAG B 1 505 402 NAG NAG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . O 2 120.939 101.516 94.04 1 55.57 ? C1 NAG 506 B 1 
HETATM 2 C C2 NAG . . . O 2 119.99 101.554 92.845 1 55.57 ? C2 NAG 506 B 1 
HETATM 3 C C3 NAG . . . O 2 118.968 100.43 92.964 1 55.57 ? C3 NAG 506 B 1 
HETATM 4 C C4 NAG . . . O 2 119.664 99.089 93.12 1 55.57 ? C4 NAG 506 B 1 
HETATM 5 C C5 NAG . . . O 2 120.621 99.144 94.306 1 55.57 ? C5 NAG 506 B 1 
HETATM 6 C C6 NAG . . . O 2 121.455 97.893 94.448 1 55.57 ? C6 NAG 506 B 1 
HETATM 7 C C7 NAG . . . O 2 119.485 103.695 91.766 1 55.57 ? C7 NAG 506 B 1 
HETATM 8 C C8 NAG . . . O 2 118.312 104.565 91.431 1 55.57 ? C8 NAG 506 B 1 
HETATM 9 N N2 NAG . . . O 2 119.287 102.814 92.744 1 55.57 ? N2 NAG 506 B 1 
HETATM 10 O O3 NAG . . . O 2 118.129 100.435 91.818 1 55.57 ? O3 NAG 506 B 1 
HETATM 11 O O4 NAG . . . O 2 118.678 98.098 93.384 1 55.57 ? O4 NAG 506 B 1 
HETATM 12 O O5 NAG . . . O 2 121.545 100.238 94.156 1 55.57 ? O5 NAG 506 B 1 
HETATM 13 O O6 NAG . . . O 2 122.291 97.963 95.598 1 55.57 ? O6 NAG 506 B 1 
HETATM 14 O O7 NAG . . . O 2 120.553 103.78 91.169 1 55.57 ? O7 NAG 506 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           256 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           14 
#