data_9C3E # _model_server_result.job_id l4bNnihlHDXid1pNoP5a2g _model_server_result.datetime_utc '2024-11-05 12:30:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9c3e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":202}' # _entry.id 9C3E # _exptl.entry_id 9C3E _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 386.654 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9C3E _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9C3E _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details nonameric _pdbx_struct_assembly.oligomeric_count 9 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 10 S N N ? 10 T N N # _pdbx_entity_branch.entity_id 8 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 8 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 8 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 8 n J NAG 1 N 1 NAG D 127 NAG 8 n J NAG 2 N 2 NAG D 128 NAG 8 n J BMA 3 N 3 BMA D 129 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 42 A CYS 42 1_555 A SG CYS 109 A CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 156 A CYS 156 1_555 A SG CYS 206 A CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 228 A CYS 228 1_555 B SG CYS 263 B CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 B SG CYS 42 B CYS 42 1_555 B SG CYS 110 B CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 B SG CYS 163 B CYS 163 1_555 B SG CYS 228 B CYS 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 C SG CYS 37 D CYS 37 1_555 C SG CYS 73 D CYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 C SG CYS 93 D CYS 93 1_555 C SG CYS 96 D CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf8 D SG CYS 49 E CYS 49 1_555 D SG CYS 98 E CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf9 D SG CYS 119 E CYS 119 1_555 D SG CYS 122 E CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf10 E SG CYS 49 F CYS 49 1_555 E SG CYS 98 F CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf11 E SG CYS 119 F CYS 119 1_555 E SG CYS 122 F CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf12 F SG CYS 46 G CYS 46 1_555 F SG CYS 87 G CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf13 F SG CYS 104 G CYS 104 1_555 F SG CYS 107 G CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf14 G SG CYS 32 X CYS 32 1_555 H SG CYS 32 Y CYS 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf15 I SG CYS 144 H CYS 145 1_555 I SG CYS 199 H CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf16 I SG CYS 425 H CYS 425 1_555 I SG CYS 488 H CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf17 I SG CYS 527 H CYS 527 1_555 I SG CYS 583 H CYS 583 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? covale ? covale1 A ND2 ASN 41 A ASN 41 1_555 K C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale2 A ND2 ASN 82 A ASN 82 1_555 L C1 NAG . A NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale3 A ND2 ASN 166 A ASN 166 1_555 M C1 NAG . A NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale4 A ND2 ASN 200 A ASN 200 1_555 N C1 NAG . A NAG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale5 A ND2 ASN 211 A ASN 211 1_555 O C1 NAG . A NAG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale6 B ND2 ASN 84 B ASN 84 1_555 P C1 NAG . B NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale7 C ND2 ASN 38 D ASN 38 1_555 J C1 NAG . N NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale8 C ND2 ASN 74 D ASN 74 1_555 Q C1 NAG . D NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale9 F ND2 ASN 52 G ASN 52 1_555 R C1 NAG . G NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale10 J O4 NAG . N NAG 1 1_555 J C1 NAG . N NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale11 J O4 NAG . N NAG 2 1_555 J C1 BMA . N BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 94 n n C1 C10 CLR sing 95 n n C1 H11 CLR sing 96 n n C1 H12 CLR sing 97 n n C2 C3 CLR sing 98 n n C2 H21 CLR sing 99 n n C2 H22 CLR sing 100 n n C3 C4 CLR sing 101 n n C3 O1 CLR sing 102 n n C3 H3 CLR sing 103 n n C4 C5 CLR sing 104 n n C4 H41 CLR sing 105 n n C4 H42 CLR sing 106 n n C5 C6 CLR doub 107 n n C5 C10 CLR sing 108 n n C6 C7 CLR sing 109 n n C6 H6 CLR sing 110 n n C7 C8 CLR sing 111 n n C7 H71 CLR sing 112 n n C7 H72 CLR sing 113 n n C8 C9 CLR sing 114 n n C8 C14 CLR sing 115 n n C8 H8 CLR sing 116 n n C9 C10 CLR sing 117 n n C9 C11 CLR sing 118 n n C9 H9 CLR sing 119 n n C10 C19 CLR sing 120 n n C11 C12 CLR sing 121 n n C11 H111 CLR sing 122 n n C11 H112 CLR sing 123 n n C12 C13 CLR sing 124 n n C12 H121 CLR sing 125 n n C12 H122 CLR sing 126 n n C13 C14 CLR sing 127 n n C13 C17 CLR sing 128 n n C13 C18 CLR sing 129 n n C14 C15 CLR sing 130 n n C14 H14 CLR sing 131 n n C15 C16 CLR sing 132 n n C15 H151 CLR sing 133 n n C15 H152 CLR sing 134 n n C16 C17 CLR sing 135 n n C16 H161 CLR sing 136 n n C16 H162 CLR sing 137 n n C17 C20 CLR sing 138 n n C17 H17 CLR sing 139 n n C18 H181 CLR sing 140 n n C18 H182 CLR sing 141 n n C18 H183 CLR sing 142 n n C19 H191 CLR sing 143 n n C19 H192 CLR sing 144 n n C19 H193 CLR sing 145 n n C20 C21 CLR sing 146 n n C20 C22 CLR sing 147 n n C20 H20 CLR sing 148 n n C21 H211 CLR sing 149 n n C21 H212 CLR sing 150 n n C21 H213 CLR sing 151 n n C22 C23 CLR sing 152 n n C22 H221 CLR sing 153 n n C22 H222 CLR sing 154 n n C23 C24 CLR sing 155 n n C23 H231 CLR sing 156 n n C23 H232 CLR sing 157 n n C24 C25 CLR sing 158 n n C24 H241 CLR sing 159 n n C24 H242 CLR sing 160 n n C25 C26 CLR sing 161 n n C25 C27 CLR sing 162 n n C25 H25 CLR sing 163 n n C26 H261 CLR sing 164 n n C26 H262 CLR sing 165 n n C26 H263 CLR sing 166 n n C27 H271 CLR sing 167 n n C27 H272 CLR sing 168 n n C27 H273 CLR sing 169 n n O1 H1 CLR sing 170 n n # _atom_sites.entry_id 9C3E _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 9 NAG A 1 301 275 NAG NAG . L 9 NAG A 1 302 276 NAG NAG . M 9 NAG A 1 303 277 NAG NAG . N 9 NAG A 1 304 278 NAG NAG . O 9 NAG A 1 305 279 NAG NAG . P 9 NAG B 1 601 306 NAG NAG . Q 9 NAG D 1 201 130 NAG NAG . R 9 NAG G 1 201 138 NAG NAG . S 10 CLR G 1 202 202 CLR CLR . T 10 CLR Y 1 201 201 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . S 10 218.375 222.433 253.305 1 179.05 ? C1 CLR 202 G 1 HETATM 2 C C2 CLR . . . S 10 217.999 222.947 254.687 1 175.03 ? C2 CLR 202 G 1 HETATM 3 C C3 CLR . . . S 10 216.794 223.861 254.618 1 175.55 ? C3 CLR 202 G 1 HETATM 4 C C4 CLR . . . S 10 215.629 223.128 253.962 1 180.83 ? C4 CLR 202 G 1 HETATM 5 C C5 CLR . . . S 10 216.005 222.559 252.621 1 183.01 ? C5 CLR 202 G 1 HETATM 6 C C6 CLR . . . S 10 215.214 222.738 251.569 1 181.38 ? C6 CLR 202 G 1 HETATM 7 C C7 CLR . . . S 10 215.413 222.105 250.235 1 182.79 ? C7 CLR 202 G 1 HETATM 8 C C8 CLR . . . S 10 216.517 221.058 250.195 1 181.66 ? C8 CLR 202 G 1 HETATM 9 C C9 CLR . . . S 10 217.68 221.444 251.111 1 179.69 ? C9 CLR 202 G 1 HETATM 10 C C10 CLR . . . S 10 217.243 221.686 252.574 1 181.92 ? C10 CLR 202 G 1 HETATM 11 C C11 CLR . . . S 10 218.802 220.414 250.977 1 176.78 ? C11 CLR 202 G 1 HETATM 12 C C12 CLR . . . S 10 219.273 220.243 249.532 1 176.82 ? C12 CLR 202 G 1 HETATM 13 C C13 CLR . . . S 10 218.127 219.841 248.601 1 174.64 ? C13 CLR 202 G 1 HETATM 14 C C14 CLR . . . S 10 217.047 220.916 248.78 1 180.2 ? C14 CLR 202 G 1 HETATM 15 C C15 CLR . . . S 10 216.051 220.643 247.666 1 183.95 ? C15 CLR 202 G 1 HETATM 16 C C16 CLR . . . S 10 216.939 220.179 246.5 1 178.32 ? C16 CLR 202 G 1 HETATM 17 C C17 CLR . . . S 10 218.362 219.934 247.072 1 175.6 ? C17 CLR 202 G 1 HETATM 18 C C18 CLR . . . S 10 217.616 218.446 248.952 1 167.1 ? C18 CLR 202 G 1 HETATM 19 C C19 CLR . . . S 10 216.936 220.365 253.291 1 184.44 ? C19 CLR 202 G 1 HETATM 20 C C20 CLR . . . S 10 219.054 218.778 246.34 1 170.47 ? C20 CLR 202 G 1 HETATM 21 C C21 CLR . . . S 10 220.504 218.579 246.759 1 174.06 ? C21 CLR 202 G 1 HETATM 22 C C22 CLR . . . S 10 218.996 219.035 244.834 1 165.67 ? C22 CLR 202 G 1 HETATM 23 C C23 CLR . . . S 10 219.727 220.296 244.397 1 172.37 ? C23 CLR 202 G 1 HETATM 24 C C24 CLR . . . S 10 220.979 219.994 243.592 1 171.43 ? C24 CLR 202 G 1 HETATM 25 C C25 CLR . . . S 10 220.848 220.315 242.11 1 171.67 ? C25 CLR 202 G 1 HETATM 26 C C26 CLR . . . S 10 219.975 219.261 241.438 1 163.29 ? C26 CLR 202 G 1 HETATM 27 C C27 CLR . . . S 10 222.219 220.398 241.451 1 175.43 ? C27 CLR 202 G 1 HETATM 28 O O1 CLR . . . S 10 216.475 224.289 255.926 1 162.48 ? O1 CLR 202 G 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #