data_9C42
#
_model_server_result.job_id            OsDtmEd68q0jhgvB7VEn7Q 
_model_server_result.datetime_utc      '2025-06-28 20:51:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9c42 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":101}' 
#
_entry.id    9C42 
#
_exptl.entry_id    9C42 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          9 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.09 
_cell.angle_gamma         90 
_cell.entry_id            9C42 
_cell.length_a            215.81 
_cell.length_b            70.352 
_cell.length_c            143.434 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9C42 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,G,H,I,J,K,L,T,U,V,AA,BA 1 1 
C,D,E,F,M,N,O,P,Q,R,S,W,X,Y,Z 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 9 Q N N 
? 9 R N N 
? 9 S N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 99 A CYS 98 1_555 A SG CYS 162 A CYS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
disulf ? disulf2 A SG CYS 201 A CYS 200 1_555 A SG CYS 257 A CYS 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf3 B SG CYS 26 B CYS 25 1_555 B SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf4 C SG CYS 99 C CYS 98 1_555 C SG CYS 162 C CYS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf5 C SG CYS 201 C CYS 200 1_555 C SG CYS 257 C CYS 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
disulf ? disulf6 D SG CYS 23 D CYS 22 1_555 D SG CYS 89 D CYS 88 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf7 D SG CYS 23 D CYS 22 1_555 D SG CYS 89 D CYS 88 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.058 ? 
disulf ? disulf8 D SG CYS 133 D CYS 132 1_555 D SG CYS 183 D CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? 
disulf ? disulf9 D SG CYS 158 D CYS 157 1_555 E SG CYS 173 E CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf10 E SG CYS 24 E CYS 23 1_555 E SG CYS 92 E CYS 91 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf11 E SG CYS 24 E CYS 23 1_555 E SG CYS 92 E CYS 91 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf12 E SG CYS 147 E CYS 146 1_555 E SG CYS 212 E CYS 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf13 F SG CYS 26 F CYS 25 1_555 F SG CYS 81 F CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
disulf ? disulf14 G SG CYS 23 G CYS 22 1_555 G SG CYS 89 G CYS 88 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf15 G SG CYS 23 G CYS 22 1_555 G SG CYS 89 G CYS 88 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf16 G SG CYS 133 G CYS 132 1_555 G SG CYS 183 G CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
disulf ? disulf17 G SG CYS 158 G CYS 157 1_555 H SG CYS 173 H CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? 
disulf ? disulf18 H SG CYS 24 H CYS 23 1_555 H SG CYS 92 H CYS 91 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.054 ? 
disulf ? disulf19 H SG CYS 24 H CYS 23 1_555 H SG CYS 92 H CYS 91 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf20 H SG CYS 147 H CYS 146 1_555 H SG CYS 212 H CYS 211 1_555 ? ? ? ? C ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf21 H SG CYS 147 H CYS 146 1_555 H SG CYS 212 H CYS 211 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf22 H SG CYS 147 H CYS 146 1_555 H SG CYS 212 H CYS 211 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.023 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 136 n n 
C1 C2 GOL sing 137 n n 
C1 H11 GOL sing 138 n n 
C1 H12 GOL sing 139 n n 
O1 HO1 GOL sing 140 n n 
C2 O2 GOL sing 141 n n 
C2 C3 GOL sing 142 n n 
C2 H2 GOL sing 143 n n 
O2 HO2 GOL sing 144 n n 
C3 O3 GOL sing 145 n n 
C3 H31 GOL sing 146 n n 
C3 H32 GOL sing 147 n n 
O3 HO3 GOL sing 148 n n 
#
_atom_sites.entry_id                     9C42 
_atom_sites.fract_transf_matrix[1][1]    0.004634 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001163 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014214 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007188 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 5 REF A 1 301 301 REF ELA . 
J 6 NA A 1 302 3 NA NA . 
K 6 NA A 1 303 4 NA NA . 
L 7 ACY A 1 304 5 ACY ACY . 
M 5 REF C 1 301 301 REF ELA . 
N 8 CL C 1 302 1 CL CL . 
O 7 ACY C 1 303 7 ACY ACY . 
P 7 ACY D 1 301 6 ACY ACY . 
Q 9 GOL E 1 301 10 GOL GOL . 
R 9 GOL F 1 101 8 GOL GOL . 
S 9 GOL F 1 102 9 GOL GOL . 
T 6 NA H 1 301 2 NA NA . 
U 10 HOH A 1 401 8 HOH HOH . 
U 10 HOH A 2 402 5 HOH HOH . 
U 10 HOH A 3 403 137 HOH HOH . 
U 10 HOH A 4 404 97 HOH HOH . 
U 10 HOH A 5 405 75 HOH HOH . 
U 10 HOH A 6 406 47 HOH HOH . 
U 10 HOH A 7 407 59 HOH HOH . 
U 10 HOH A 8 408 11 HOH HOH . 
U 10 HOH A 9 409 78 HOH HOH . 
U 10 HOH A 10 410 52 HOH HOH . 
U 10 HOH A 11 411 77 HOH HOH . 
U 10 HOH A 12 412 58 HOH HOH . 
U 10 HOH A 13 413 90 HOH HOH . 
U 10 HOH A 14 414 126 HOH HOH . 
U 10 HOH A 15 415 7 HOH HOH . 
U 10 HOH A 16 416 64 HOH HOH . 
U 10 HOH A 17 417 12 HOH HOH . 
U 10 HOH A 18 418 130 HOH HOH . 
U 10 HOH A 19 419 164 HOH HOH . 
U 10 HOH A 20 420 101 HOH HOH . 
U 10 HOH A 21 421 125 HOH HOH . 
U 10 HOH A 22 422 168 HOH HOH . 
U 10 HOH A 23 423 167 HOH HOH . 
V 10 HOH B 1 101 40 HOH HOH . 
V 10 HOH B 2 102 35 HOH HOH . 
V 10 HOH B 3 103 61 HOH HOH . 
V 10 HOH B 4 104 154 HOH HOH . 
V 10 HOH B 5 105 114 HOH HOH . 
V 10 HOH B 6 106 46 HOH HOH . 
V 10 HOH B 7 107 80 HOH HOH . 
W 10 HOH C 1 401 138 HOH HOH . 
W 10 HOH C 2 402 13 HOH HOH . 
W 10 HOH C 3 403 124 HOH HOH . 
W 10 HOH C 4 404 103 HOH HOH . 
W 10 HOH C 5 405 100 HOH HOH . 
W 10 HOH C 6 406 14 HOH HOH . 
W 10 HOH C 7 407 38 HOH HOH . 
W 10 HOH C 8 408 165 HOH HOH . 
W 10 HOH C 9 409 96 HOH HOH . 
W 10 HOH C 10 410 150 HOH HOH . 
W 10 HOH C 11 411 111 HOH HOH . 
W 10 HOH C 12 412 16 HOH HOH . 
W 10 HOH C 13 413 134 HOH HOH . 
W 10 HOH C 14 414 121 HOH HOH . 
W 10 HOH C 15 415 104 HOH HOH . 
W 10 HOH C 16 416 55 HOH HOH . 
W 10 HOH C 17 417 110 HOH HOH . 
W 10 HOH C 18 418 157 HOH HOH . 
W 10 HOH C 19 419 63 HOH HOH . 
W 10 HOH C 20 420 131 HOH HOH . 
W 10 HOH C 21 421 34 HOH HOH . 
W 10 HOH C 22 422 123 HOH HOH . 
W 10 HOH C 23 423 21 HOH HOH . 
X 10 HOH D 1 401 87 HOH HOH . 
X 10 HOH D 2 402 6 HOH HOH . 
X 10 HOH D 3 403 18 HOH HOH . 
X 10 HOH D 4 404 41 HOH HOH . 
X 10 HOH D 5 405 79 HOH HOH . 
X 10 HOH D 6 406 70 HOH HOH . 
X 10 HOH D 7 407 128 HOH HOH . 
X 10 HOH D 8 408 19 HOH HOH . 
X 10 HOH D 9 409 152 HOH HOH . 
X 10 HOH D 10 410 48 HOH HOH . 
X 10 HOH D 11 411 17 HOH HOH . 
X 10 HOH D 12 412 81 HOH HOH . 
X 10 HOH D 13 413 4 HOH HOH . 
X 10 HOH D 14 414 142 HOH HOH . 
X 10 HOH D 15 415 107 HOH HOH . 
X 10 HOH D 16 416 98 HOH HOH . 
X 10 HOH D 17 417 145 HOH HOH . 
X 10 HOH D 18 418 72 HOH HOH . 
X 10 HOH D 19 419 146 HOH HOH . 
X 10 HOH D 20 420 139 HOH HOH . 
Y 10 HOH E 1 401 160 HOH HOH . 
Y 10 HOH E 2 402 20 HOH HOH . 
Y 10 HOH E 3 403 161 HOH HOH . 
Y 10 HOH E 4 404 127 HOH HOH . 
Y 10 HOH E 5 405 102 HOH HOH . 
Y 10 HOH E 6 406 56 HOH HOH . 
Y 10 HOH E 7 407 15 HOH HOH . 
Y 10 HOH E 8 408 119 HOH HOH . 
Y 10 HOH E 9 409 73 HOH HOH . 
Z 10 HOH F 1 201 10 HOH HOH . 
Z 10 HOH F 2 202 3 HOH HOH . 
Z 10 HOH F 3 203 166 HOH HOH . 
Z 10 HOH F 4 204 44 HOH HOH . 
Z 10 HOH F 5 205 67 HOH HOH . 
Z 10 HOH F 6 206 82 HOH HOH . 
Z 10 HOH F 7 207 84 HOH HOH . 
Z 10 HOH F 8 208 162 HOH HOH . 
Z 10 HOH F 9 209 49 HOH HOH . 
Z 10 HOH F 10 210 85 HOH HOH . 
Z 10 HOH F 11 211 163 HOH HOH . 
AA 10 HOH G 1 301 109 HOH HOH . 
AA 10 HOH G 2 302 147 HOH HOH . 
AA 10 HOH G 3 303 60 HOH HOH . 
AA 10 HOH G 4 304 141 HOH HOH . 
AA 10 HOH G 5 305 24 HOH HOH . 
AA 10 HOH G 6 306 26 HOH HOH . 
AA 10 HOH G 7 307 57 HOH HOH . 
AA 10 HOH G 8 308 43 HOH HOH . 
AA 10 HOH G 9 309 76 HOH HOH . 
AA 10 HOH G 10 310 69 HOH HOH . 
AA 10 HOH G 11 311 25 HOH HOH . 
AA 10 HOH G 12 312 37 HOH HOH . 
AA 10 HOH G 13 313 108 HOH HOH . 
AA 10 HOH G 14 314 51 HOH HOH . 
AA 10 HOH G 15 315 106 HOH HOH . 
AA 10 HOH G 16 316 118 HOH HOH . 
AA 10 HOH G 17 317 144 HOH HOH . 
AA 10 HOH G 18 318 50 HOH HOH . 
AA 10 HOH G 19 319 149 HOH HOH . 
AA 10 HOH G 20 320 71 HOH HOH . 
AA 10 HOH G 21 321 155 HOH HOH . 
AA 10 HOH G 22 322 91 HOH HOH . 
AA 10 HOH G 23 323 28 HOH HOH . 
AA 10 HOH G 24 324 23 HOH HOH . 
AA 10 HOH G 25 325 22 HOH HOH . 
AA 10 HOH G 26 326 27 HOH HOH . 
AA 10 HOH G 27 327 94 HOH HOH . 
AA 10 HOH G 28 328 148 HOH HOH . 
AA 10 HOH G 29 329 132 HOH HOH . 
BA 10 HOH H 1 401 140 HOH HOH . 
BA 10 HOH H 2 402 1 HOH HOH . 
BA 10 HOH H 3 403 45 HOH HOH . 
BA 10 HOH H 4 404 29 HOH HOH . 
BA 10 HOH H 5 405 133 HOH HOH . 
BA 10 HOH H 6 406 135 HOH HOH . 
BA 10 HOH H 7 407 92 HOH HOH . 
BA 10 HOH H 8 408 122 HOH HOH . 
BA 10 HOH H 9 409 120 HOH HOH . 
BA 10 HOH H 10 410 62 HOH HOH . 
BA 10 HOH H 11 411 30 HOH HOH . 
BA 10 HOH H 12 412 153 HOH HOH . 
BA 10 HOH H 13 413 31 HOH HOH . 
BA 10 HOH H 14 414 93 HOH HOH . 
BA 10 HOH H 15 415 42 HOH HOH . 
BA 10 HOH H 16 416 116 HOH HOH . 
BA 10 HOH H 17 417 32 HOH HOH . 
BA 10 HOH H 18 418 113 HOH HOH . 
BA 10 HOH H 19 419 99 HOH HOH . 
BA 10 HOH H 20 420 159 HOH HOH . 
BA 10 HOH H 21 421 86 HOH HOH . 
BA 10 HOH H 22 422 156 HOH HOH . 
BA 10 HOH H 23 423 129 HOH HOH . 
BA 10 HOH H 24 424 158 HOH HOH . 
BA 10 HOH H 25 425 115 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . R 9 -28.83 58.995 178.026 1 41.1 ? C1 GOL 101 F 1 
HETATM 2 O O1 GOL . . . R 9 -29.675 59.325 177.089 1 38.77 ? O1 GOL 101 F 1 
HETATM 3 C C2 GOL . . . R 9 -27.722 58.168 177.388 1 42.52 ? C2 GOL 101 F 1 
HETATM 4 O O2 GOL . . . R 9 -26.579 58.404 178.096 1 43.57 ? O2 GOL 101 F 1 
HETATM 5 C C3 GOL . . . R 9 -28.331 56.79 177.454 1 41.35 ? C3 GOL 101 F 1 
HETATM 6 O O3 GOL . . . R 9 -27.465 55.98 176.75 1 45.54 ? O3 GOL 101 F 1 
HETATM 7 H H11 GOL . . . R 9 -29.245 58.476 178.733 1 48.95 ? H11 GOL 101 F 1 
HETATM 8 H H12 GOL . . . R 9 -28.437 59.769 178.46 1 48.95 ? H12 GOL 101 F 1 
HETATM 9 H HO1 GOL . . . R 9 -29.283 59.911 176.615 1 46.16 ? HO1 GOL 101 F 1 
HETATM 10 H H2 GOL . . . R 9 -27.474 58.351 176.468 1 50.66 ? H2 GOL 101 F 1 
HETATM 11 H HO2 GOL . . . R 9 -26.095 57.739 178.013 1 51.93 ? HO2 GOL 101 F 1 
HETATM 12 H H31 GOL . . . R 9 -29.229 56.815 177.087 1 49.26 ? H31 GOL 101 F 1 
HETATM 13 H H32 GOL . . . R 9 -28.442 56.53 178.382 1 49.26 ? H32 GOL 101 F 1 
HETATM 14 H HO3 GOL . . . R 9 -26.942 56.506 176.325 1 54.28 ? HO3 GOL 101 F 1 
#
_model_server_stats.io_time_ms              129 
_model_server_stats.parse_time_ms           93 
_model_server_stats.create_model_time_ms    64 
_model_server_stats.query_time_ms           1203 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           14 
#