data_9C4R
#
_model_server_result.job_id            DpEvmD5DqlekXHzfyiFjCQ 
_model_server_result.datetime_utc      '2024-11-05 03:46:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9c4r 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":702}' 
#
_entry.id    9C4R 
#
_exptl.entry_id    9C4R 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            9C4R 
_cell.length_a            178.415 
_cell.length_b            178.415 
_cell.length_c            184.309 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9C4R 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        181 
_symmetry.space_group_name_Hall    'P 64 2 (x,y,z+1/6)' 
_symmetry.space_group_name_H-M     'P 64 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C PRO 254 A PRO 339 1_555 A N CSD 255 A CSD 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 A C CSD 255 A CSD 340 1_555 A N ASP 256 A ASP 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
metalc ? metalc1 A OD1 ASP 453 A ASP 538 1_555 B MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? 
metalc ? metalc2 A OD1 ASN 480 A ASN 565 1_555 B MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? 
metalc ? metalc3 A O HIS 482 A HIS 567 1_555 B MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? 
metalc ? metalc4 B MG MG . A MG 701 1_555 D OAK AUJ . A AUJ 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
metalc ? metalc5 B MG MG . A MG 701 1_555 D OAI AUJ . A AUJ 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
metalc ? metalc6 B MG MG . A MG 701 1_555 I O HOH . A HOH 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 203 n n 
PA O2A FAD sing 204 n n 
PA O5B FAD sing 205 n n 
PA O3P FAD sing 206 n n 
O2A HOA2 FAD sing 207 n n 
O5B C5B FAD sing 208 n n 
C5B C4B FAD sing 209 n n 
C5B H51A FAD sing 210 n n 
C5B H52A FAD sing 211 n n 
C4B O4B FAD sing 212 n n 
C4B C3B FAD sing 213 n n 
C4B H4B FAD sing 214 n n 
O4B C1B FAD sing 215 n n 
C3B O3B FAD sing 216 n n 
C3B C2B FAD sing 217 n n 
C3B H3B FAD sing 218 n n 
O3B HO3A FAD sing 219 n n 
C2B O2B FAD sing 220 n n 
C2B C1B FAD sing 221 n n 
C2B H2B FAD sing 222 n n 
O2B HO2A FAD sing 223 n n 
C1B N9A FAD sing 224 n n 
C1B H1B FAD sing 225 n n 
N9A C8A FAD sing 226 n y 
N9A C4A FAD sing 227 n y 
C8A N7A FAD doub 228 n y 
C8A H8A FAD sing 229 n n 
N7A C5A FAD sing 230 n y 
C5A C6A FAD sing 231 n y 
C5A C4A FAD doub 232 n y 
C6A N6A FAD sing 233 n n 
C6A N1A FAD doub 234 n y 
N6A H61A FAD sing 235 n n 
N6A H62A FAD sing 236 n n 
N1A C2A FAD sing 237 n y 
C2A N3A FAD doub 238 n y 
C2A H2A FAD sing 239 n n 
N3A C4A FAD sing 240 n y 
N1 C2 FAD sing 241 n n 
N1 C10 FAD doub 242 n n 
C2 O2 FAD doub 243 n n 
C2 N3 FAD sing 244 n n 
N3 C4 FAD sing 245 n n 
N3 HN3 FAD sing 246 n n 
C4 O4 FAD doub 247 n n 
C4 C4X FAD sing 248 n n 
C4X N5 FAD doub 249 n n 
C4X C10 FAD sing 250 n n 
N5 C5X FAD sing 251 n n 
C5X C6 FAD doub 252 n y 
C5X C9A FAD sing 253 n y 
C6 C7 FAD sing 254 n y 
C6 H6 FAD sing 255 n n 
C7 C7M FAD sing 256 n n 
C7 C8 FAD doub 257 n y 
C7M HM71 FAD sing 258 n n 
C7M HM72 FAD sing 259 n n 
C7M HM73 FAD sing 260 n n 
C8 C8M FAD sing 261 n n 
C8 C9 FAD sing 262 n y 
C8M HM81 FAD sing 263 n n 
C8M HM82 FAD sing 264 n n 
C8M HM83 FAD sing 265 n n 
C9 C9A FAD doub 266 n y 
C9 H9 FAD sing 267 n n 
C9A N10 FAD sing 268 n n 
N10 C10 FAD sing 269 n n 
N10 C1' FAD sing 270 n n 
C1' C2' FAD sing 271 n n 
C1' "H1'1" FAD sing 272 n n 
C1' "H1'2" FAD sing 273 n n 
C2' O2' FAD sing 274 n n 
C2' C3' FAD sing 275 n n 
C2' H2' FAD sing 276 n n 
O2' HO2' FAD sing 277 n n 
C3' O3' FAD sing 278 n n 
C3' C4' FAD sing 279 n n 
C3' H3' FAD sing 280 n n 
O3' HO3' FAD sing 281 n n 
C4' O4' FAD sing 282 n n 
C4' C5' FAD sing 283 n n 
C4' H4' FAD sing 284 n n 
O4' HO4' FAD sing 285 n n 
C5' O5' FAD sing 286 n n 
C5' "H5'1" FAD sing 287 n n 
C5' "H5'2" FAD sing 288 n n 
O5' P FAD sing 289 n n 
P O1P FAD doub 290 n n 
P O2P FAD sing 291 n n 
P O3P FAD sing 292 n n 
O2P HOP2 FAD sing 293 n n 
#
_atom_sites.entry_id                     9C4R 
_atom_sites.fract_transf_matrix[1][1]    0.005605 
_atom_sites.fract_transf_matrix[1][2]    0.003236 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006472 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005426 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 701 701 MG MG . 
C 3 FAD A 1 702 702 FAD FAD . 
D 4 AUJ A 1 703 801 AUJ DR2 . 
E 5 A1AUL A 1 704 901 A1AUL JG2 . 
F 6 ACT A 1 705 1001 ACT ACT . 
G 7 NHE A 1 706 1101 NHE NHE . 
H 8 OXY A 1 707 1201 OXY O2 . 
I 9 HOH A 1 801 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . C 3 57.777 -67.697 -8.715 1 57.44 ? PA FAD 702 A 1 
HETATM 2 O O1A FAD . . . C 3 58.519 -66.477 -8.224 1 50.95 ? O1A FAD 702 A 1 
HETATM 3 O O2A FAD . . . C 3 58.306 -68.087 -10.079 1 72.42 ? O2A FAD 702 A 1 
HETATM 4 O O5B FAD . . . C 3 56.134 -67.346 -8.818 1 75.57 ? O5B FAD 702 A 1 
HETATM 5 C C5B FAD . . . C 3 55.508 -66.673 -7.715 1 62.57 ? C5B FAD 702 A 1 
HETATM 6 C C4B FAD . . . C 3 54.651 -67.57 -7.068 1 50.74 ? C4B FAD 702 A 1 
HETATM 7 O O4B FAD . . . C 3 53.83 -66.838 -6.026 1 67.82 ? O4B FAD 702 A 1 
HETATM 8 C C3B FAD . . . C 3 53.606 -68.18 -8.113 1 58.46 ? C3B FAD 702 A 1 
HETATM 9 O O3B FAD . . . C 3 53.142 -69.534 -7.659 1 60.19 ? O3B FAD 702 A 1 
HETATM 10 C C2B FAD . . . C 3 52.472 -67.177 -8.006 1 56.02 ? C2B FAD 702 A 1 
HETATM 11 O O2B FAD . . . C 3 51.18 -67.844 -8.267 1 65.62 ? O2B FAD 702 A 1 
HETATM 12 C C1B FAD . . . C 3 52.585 -66.698 -6.422 1 55.62 ? C1B FAD 702 A 1 
HETATM 13 N N9A FAD . . . C 3 52.185 -65.333 -6.285 1 62.24 ? N9A FAD 702 A 1 
HETATM 14 C C8A FAD . . . C 3 52.414 -64.362 -7.149 1 58.25 ? C8A FAD 702 A 1 
HETATM 15 N N7A FAD . . . C 3 51.897 -63.233 -6.674 1 54.87 ? N7A FAD 702 A 1 
HETATM 16 C C5A FAD . . . C 3 51.327 -63.482 -5.484 1 64.1 ? C5A FAD 702 A 1 
HETATM 17 C C6A FAD . . . C 3 50.636 -62.722 -4.517 1 62.37 ? C6A FAD 702 A 1 
HETATM 18 N N6A FAD . . . C 3 50.407 -61.3 -4.719 1 76.81 ? N6A FAD 702 A 1 
HETATM 19 N N1A FAD . . . C 3 50.2 -63.326 -3.42 1 55.87 ? N1A FAD 702 A 1 
HETATM 20 C C2A FAD . . . C 3 50.396 -64.619 -3.213 1 69.36 ? C2A FAD 702 A 1 
HETATM 21 N N3A FAD . . . C 3 51.041 -65.363 -4.102 1 60.75 ? N3A FAD 702 A 1 
HETATM 22 C C4A FAD . . . C 3 51.513 -64.827 -5.234 1 62.14 ? C4A FAD 702 A 1 
HETATM 23 N N1 FAD . . . C 3 65.88 -71.112 -7.257 1 65.15 ? N1 FAD 702 A 1 
HETATM 24 C C2 FAD . . . C 3 66.086 -71.346 -5.969 1 65.83 ? C2 FAD 702 A 1 
HETATM 25 O O2 FAD . . . C 3 65.162 -70.871 -5.037 1 61.51 ? O2 FAD 702 A 1 
HETATM 26 N N3 FAD . . . C 3 67.147 -72.02 -5.538 1 63.76 ? N3 FAD 702 A 1 
HETATM 27 C C4 FAD . . . C 3 68.045 -72.485 -6.391 1 73.75 ? C4 FAD 702 A 1 
HETATM 28 O O4 FAD . . . C 3 69.162 -73.198 -5.922 1 67.43 ? O4 FAD 702 A 1 
HETATM 29 C C4X FAD . . . C 3 67.87 -72.263 -7.771 1 75.13 ? C4X FAD 702 A 1 
HETATM 30 N N5 FAD . . . C 3 68.761 -72.716 -8.68 1 63.93 ? N5 FAD 702 A 1 
HETATM 31 C C5X FAD . . . C 3 68.695 -72.178 -9.915 1 69.15 ? C5X FAD 702 A 1 
HETATM 32 C C6 FAD . . . C 3 69.791 -72.348 -10.783 1 68.09 ? C6 FAD 702 A 1 
HETATM 33 C C7 FAD . . . C 3 69.74 -71.795 -12.06 1 67.42 ? C7 FAD 702 A 1 
HETATM 34 C C7M FAD . . . C 3 70.926 -71.973 -13.015 1 63.02 ? C7M FAD 702 A 1 
HETATM 35 C C8 FAD . . . C 3 68.617 -71.081 -12.477 1 68.1 ? C8 FAD 702 A 1 
HETATM 36 C C8M FAD . . . C 3 68.569 -70.479 -13.881 1 55.44 ? C8M FAD 702 A 1 
HETATM 37 C C9 FAD . . . C 3 67.531 -70.913 -11.615 1 74.44 ? C9 FAD 702 A 1 
HETATM 38 C C9A FAD . . . C 3 67.585 -71.472 -10.326 1 80.39 ? C9A FAD 702 A 1 
HETATM 39 N N10 FAD . . . C 3 66.539 -71.313 -9.481 1 67.53 ? N10 FAD 702 A 1 
HETATM 40 C C10 FAD . . . C 3 66.755 -71.559 -8.173 1 65.63 ? C10 FAD 702 A 1 
HETATM 41 C C1' FAD . . . C 3 65.379 -70.477 -9.903 1 66.93 ? C1' FAD 702 A 1 
HETATM 42 C C2' FAD . . . C 3 64.154 -71.377 -10.248 1 49.79 ? C2' FAD 702 A 1 
HETATM 43 O O2' FAD . . . C 3 64.309 -72.426 -11.208 1 61.15 ? O2' FAD 702 A 1 
HETATM 44 C C3' FAD . . . C 3 62.729 -70.838 -9.957 1 61.07 ? C3' FAD 702 A 1 
HETATM 45 O O3' FAD . . . C 3 62.55 -69.624 -10.597 1 58.85 ? O3' FAD 702 A 1 
HETATM 46 C C4' FAD . . . C 3 62.548 -70.64 -8.45 1 59.25 ? C4' FAD 702 A 1 
HETATM 47 O O4' FAD . . . C 3 63.11 -71.705 -7.776 1 74.49 ? O4' FAD 702 A 1 
HETATM 48 C C5' FAD . . . C 3 61.03 -70.568 -8.136 1 61.73 ? C5' FAD 702 A 1 
HETATM 49 O O5' FAD . . . C 3 60.735 -69.273 -7.603 1 49.78 ? O5' FAD 702 A 1 
HETATM 50 P P FAD . . . C 3 59.358 -69.121 -6.641 1 58.57 ? P FAD 702 A 1 
HETATM 51 O O1P FAD . . . C 3 59.226 -70.344 -5.761 1 57.24 ? O1P FAD 702 A 1 
HETATM 52 O O2P FAD . . . C 3 59.485 -67.888 -5.78 1 48.26 ? O2P FAD 702 A 1 
HETATM 53 O O3P FAD . . . C 3 58.002 -68.966 -7.626 1 69.98 ? O3P FAD 702 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           53 
#