data_9C4R
#
_model_server_result.job_id            Pjv2D8nATDsoFL1L6ij2_g 
_model_server_result.datetime_utc      '2024-11-05 03:36:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9c4r 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":703}' 
#
_entry.id    9C4R 
#
_exptl.entry_id    9C4R 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              501.366 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-[3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-2-[(1~{S})-1-(dioxidanyl)-1-oxidanyl-ethyl]-4-methyl-1,3-thiazol-5-yl]ethyl phosphono hydrogen phosphate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            9C4R 
_cell.length_a            178.415 
_cell.length_b            178.415 
_cell.length_c            184.309 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9C4R 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        181 
_symmetry.space_group_name_Hall    'P 64 2 (x,y,z+1/6)' 
_symmetry.space_group_name_H-M     'P 64 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C PRO 254 A PRO 339 1_555 A N CSD 255 A CSD 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 A C CSD 255 A CSD 340 1_555 A N ASP 256 A ASP 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
metalc ? metalc1 A OD1 ASP 453 A ASP 538 1_555 B MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? 
metalc ? metalc2 A OD1 ASN 480 A ASN 565 1_555 B MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? 
metalc ? metalc3 A O HIS 482 A HIS 567 1_555 B MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? 
metalc ? metalc4 B MG MG . A MG 701 1_555 D OAK AUJ . A AUJ 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
metalc ? metalc5 B MG MG . A MG 701 1_555 D OAI AUJ . A AUJ 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
metalc ? metalc6 B MG MG . A MG 701 1_555 I O HOH . A HOH 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? 
#
_chem_comp.formula           'C14 H23 N4 O10 P2 S 1' 
_chem_comp.formula_weight    501.366 
_chem_comp.id                AUJ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-[3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-2-[(1~{S})-1-(dioxidanyl)-1-oxidanyl-ethyl]-4-methyl-1,3-thiazol-5-yl]ethyl phosphono hydrogen phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAC CBC AUJ sing 120 n n 
OAH CBC AUJ sing 121 n n 
OAF PBD AUJ doub 122 n n 
CBC OBC1 AUJ sing 123 n n 
CBC CBA AUJ sing 124 n n 
OAJ PBD AUJ sing 125 n n 
OC11 OBC1 AUJ sing 126 n n 
NAD C4 AUJ sing 127 n n 
PBD OAT AUJ sing 128 n n 
PBD OAI AUJ sing 129 n n 
SAU CBA AUJ sing 130 n y 
SAU CAZ AUJ sing 131 n y 
OAT PBE AUJ sing 132 n n 
CBA NBB AUJ doub 133 n y 
C4 N3 AUJ doub 134 n y 
C4 C5 AUJ sing 135 n y 
N3 C2 AUJ sing 136 n y 
OAG PBE AUJ doub 137 n n 
CAN OAS AUJ sing 138 n n 
CAN CAO AUJ sing 139 n n 
PBE OAS AUJ sing 140 n n 
PBE OAK AUJ sing 141 n n 
NBB CAP AUJ sing 142 n n 
NBB CAX AUJ sing 143 n y 
CAZ CAO AUJ sing 144 n n 
CAZ CAX AUJ doub 145 n y 
CAP C5 AUJ sing 146 n n 
C5 C6 AUJ doub 147 n y 
CAX CAB AUJ sing 148 n n 
C2 CAA AUJ sing 149 n n 
C2 N1 AUJ doub 150 n y 
C6 N1 AUJ sing 151 n y 
CAB H1 AUJ sing 152 n n 
CAB H2 AUJ sing 153 n n 
CAB H3 AUJ sing 154 n n 
OAH H4 AUJ sing 155 n n 
CAC H5 AUJ sing 156 n n 
CAC H6 AUJ sing 157 n n 
CAC H7 AUJ sing 158 n n 
OAI H8 AUJ sing 159 n n 
OAK H9 AUJ sing 160 n n 
CAA H10 AUJ sing 161 n n 
CAA H11 AUJ sing 162 n n 
CAA H12 AUJ sing 163 n n 
CAN H13 AUJ sing 164 n n 
CAN H14 AUJ sing 165 n n 
CAO H15 AUJ sing 166 n n 
CAO H16 AUJ sing 167 n n 
CAP H17 AUJ sing 168 n n 
CAP H18 AUJ sing 169 n n 
NAD H19 AUJ sing 170 n n 
NAD H20 AUJ sing 171 n n 
OAJ H21 AUJ sing 172 n n 
C6 H23 AUJ sing 173 n n 
OC11 H24 AUJ sing 174 n n 
#
_atom_sites.entry_id                     9C4R 
_atom_sites.fract_transf_matrix[1][1]    0.005605 
_atom_sites.fract_transf_matrix[1][2]    0.003236 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006472 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005426 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 701 701 MG MG . 
C 3 FAD A 1 702 702 FAD FAD . 
D 4 AUJ A 1 703 801 AUJ DR2 . 
E 5 A1AUL A 1 704 901 A1AUL JG2 . 
F 6 ACT A 1 705 1001 ACT ACT . 
G 7 NHE A 1 706 1101 NHE NHE . 
H 8 OXY A 1 707 1201 OXY O2 . 
I 9 HOH A 1 801 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAB AUJ . . . D 4 74.836 -72.92 -21.764 1 60.23 ? CAB AUJ 703 A 1 
HETATM 2 O OAH AUJ . . . D 4 70.5 -72.747 -17.932 0.17 75.51 ? OAH AUJ 703 A 1 
HETATM 3 O OAG AUJ . . . D 4 77.306 -66.78 -19.435 1 69.68 ? OAG AUJ 703 A 1 
HETATM 4 C CAC AUJ . . . D 4 72.044 -73.444 -16.271 0.73 76.81 ? CAC AUJ 703 A 1 
HETATM 5 O OAI AUJ . . . D 4 80.22 -68.878 -17.01 1 64.01 ? OAI AUJ 703 A 1 
HETATM 6 O OAK AUJ . . . D 4 79.376 -67.731 -19.327 1 64.4 ? OAK AUJ 703 A 1 
HETATM 7 C CAA AUJ . . . D 4 69.863 -69.323 -24.182 1 52.56 ? CAA AUJ 703 A 1 
HETATM 8 C CAN AUJ . . . D 4 76.472 -70.076 -18.963 1 59.85 ? CAN AUJ 703 A 1 
HETATM 9 C CAO AUJ . . . D 4 76.309 -71.377 -19.711 1 71.56 ? CAO AUJ 703 A 1 
HETATM 10 C CAP AUJ . . . D 4 71.978 -73.576 -20.866 1 74.41 ? CAP AUJ 703 A 1 
HETATM 11 C CAX AUJ . . . D 4 74.258 -72.652 -20.392 1 75.91 ? CAX AUJ 703 A 1 
HETATM 12 C CAZ AUJ . . . D 4 74.954 -71.986 -19.448 1 69.46 ? CAZ AUJ 703 A 1 
HETATM 13 N NAD AUJ . . . D 4 70.334 -71.296 -19.731 0.8 73.25 ? NAD AUJ 703 A 1 
HETATM 14 O OAF AUJ . . . D 4 79.199 -67.826 -15.26 1 61.55 ? OAF AUJ 703 A 1 
HETATM 15 O OAJ AUJ . . . D 4 78.382 -70.147 -15.832 1 62.88 ? OAJ AUJ 703 A 1 
HETATM 16 O OAS AUJ . . . D 4 77.428 -69.3 -19.637 1 66.05 ? OAS AUJ 703 A 1 
HETATM 17 O OAT AUJ . . . D 4 77.812 -68.142 -17.36 1 78.24 ? OAT AUJ 703 A 1 
HETATM 18 S SAU AUJ . . . D 4 74.092 -71.939 -17.906 0.8 66.46 ? SAU AUJ 703 A 1 
HETATM 19 C CBA AUJ . . . D 4 72.781 -72.92 -18.566 0.8 75.77 ? CBA AUJ 703 A 1 
HETATM 20 C CBC AUJ . . . D 4 71.662 -73.507 -17.732 0.15 78.95 ? CBC AUJ 703 A 1 
HETATM 21 N NBB AUJ . . . D 4 72.963 -73.08 -19.969 0.8 72.11 ? NBB AUJ 703 A 1 
HETATM 22 P PBD AUJ . . . D 4 78.891 -68.751 -16.374 1 60.65 ? PBD AUJ 703 A 1 
HETATM 23 P PBE AUJ . . . D 4 77.977 -68 -18.928 1 62.81 ? PBE AUJ 703 A 1 
HETATM 24 N N1 AUJ . . . D 4 71.111 -71.388 -23.838 1 59.37 ? N1 AUJ 703 A 1 
HETATM 25 C C2 AUJ . . . D 4 70.407 -70.426 -23.301 1 71.99 ? C2 AUJ 703 A 1 
HETATM 26 N N3 AUJ . . . D 4 70.144 -70.397 -21.906 1 61.85 ? N3 AUJ 703 A 1 
HETATM 27 C C4 AUJ . . . D 4 70.603 -71.336 -21.123 1 60.25 ? C4 AUJ 703 A 1 
HETATM 28 C C5 AUJ . . . D 4 71.419 -72.458 -21.723 1 73.55 ? C5 AUJ 703 A 1 
HETATM 29 C C6 AUJ . . . D 4 71.64 -72.445 -23.051 1 69.02 ? C6 AUJ 703 A 1 
HETATM 30 O OBC1 AUJ . . . D 4 71.436 -74.847 -18.095 0.6 87.02 ? OBC1 AUJ 703 A 1 
HETATM 31 O OC11 AUJ . . . D 4 70.349 -75.537 -17.392 1 110.04 ? OC11 AUJ 703 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           233 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           31 
#