data_9C57
#
_model_server_result.job_id            gokHd07If4Fw6xN49meEuA 
_model_server_result.datetime_utc      '2024-11-14 19:41:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9c57 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"T","auth_seq_id":501}' 
#
_entry.id    9C57 
#
_exptl.entry_id    9C57 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          10 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9C57 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9C57 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tridecameric 
_pdbx_struct_assembly.oligomeric_count      13 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      10 
_struct_asym.id                             T 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 119 n n 
PG O2G ATP sing 120 n n 
PG O3G ATP sing 121 n n 
PG O3B ATP sing 122 n n 
O2G HOG2 ATP sing 123 n n 
O3G HOG3 ATP sing 124 n n 
PB O1B ATP doub 125 n n 
PB O2B ATP sing 126 n n 
PB O3B ATP sing 127 n n 
PB O3A ATP sing 128 n n 
O2B HOB2 ATP sing 129 n n 
PA O1A ATP doub 130 n n 
PA O2A ATP sing 131 n n 
PA O3A ATP sing 132 n n 
PA O5' ATP sing 133 n n 
O2A HOA2 ATP sing 134 n n 
O5' C5' ATP sing 135 n n 
C5' C4' ATP sing 136 n n 
C5' "H5'1" ATP sing 137 n n 
C5' "H5'2" ATP sing 138 n n 
C4' O4' ATP sing 139 n n 
C4' C3' ATP sing 140 n n 
C4' H4' ATP sing 141 n n 
O4' C1' ATP sing 142 n n 
C3' O3' ATP sing 143 n n 
C3' C2' ATP sing 144 n n 
C3' H3' ATP sing 145 n n 
O3' HO3' ATP sing 146 n n 
C2' O2' ATP sing 147 n n 
C2' C1' ATP sing 148 n n 
C2' H2' ATP sing 149 n n 
O2' HO2' ATP sing 150 n n 
C1' N9 ATP sing 151 n n 
C1' H1' ATP sing 152 n n 
N9 C8 ATP sing 153 n y 
N9 C4 ATP sing 154 n y 
C8 N7 ATP doub 155 n y 
C8 H8 ATP sing 156 n n 
N7 C5 ATP sing 157 n y 
C5 C6 ATP sing 158 n y 
C5 C4 ATP doub 159 n y 
C6 N6 ATP sing 160 n n 
C6 N1 ATP doub 161 n y 
N6 HN61 ATP sing 162 n n 
N6 HN62 ATP sing 163 n n 
N1 C2 ATP sing 164 n y 
C2 N3 ATP doub 165 n y 
C2 H2 ATP sing 166 n n 
N3 C4 ATP sing 167 n y 
#
_atom_sites.entry_id                     9C57 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
N 9 AGS E 1 501 501 AGS AGS . 
O 9 AGS B 1 501 501 AGS AGS . 
P 9 AGS C 1 501 501 AGS AGS . 
Q 9 AGS D 1 501 501 AGS AGS . 
R 9 AGS F 1 501 501 AGS AGS . 
S 9 AGS G 1 3201 2301 AGS AGS . 
T 10 ATP L 1 501 501 ATP ATP . 
U 9 AGS A 1 501 501 AGS AGS . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . T 10 222.901 253.375 145.24 1 89.33 ? PG ATP 501 L 1 
HETATM 2 O O1G ATP . . . T 10 223.475 254.476 146.062 1 86.07 ? O1G ATP 501 L 1 
HETATM 3 O O2G ATP . . . T 10 222.06 253.864 144.068 1 92.56 ? O2G ATP 501 L 1 
HETATM 4 O O3G ATP . . . T 10 223.946 252.382 144.727 1 88.5 ? O3G ATP 501 L 1 
HETATM 5 P PB ATP . . . T 10 220.337 252.228 146.274 1 77.98 ? PB ATP 501 L 1 
HETATM 6 O O1B ATP . . . T 10 219.535 253.445 146.066 1 78.93 ? O1B ATP 501 L 1 
HETATM 7 O O2B ATP . . . T 10 220.134 251.513 147.608 1 89.81 ? O2B ATP 501 L 1 
HETATM 8 O O3B ATP . . . T 10 221.896 252.489 146.109 1 87.36 ? O3B ATP 501 L 1 
HETATM 9 P PA ATP . . . T 10 218.976 251 143.968 1 90.55 ? PA ATP 501 L 1 
HETATM 10 O O1A ATP . . . T 10 219.314 251.812 142.782 1 93.31 ? O1A ATP 501 L 1 
HETATM 11 O O2A ATP . . . T 10 217.615 251.317 144.583 1 89.95 ? O2A ATP 501 L 1 
HETATM 12 O O3A ATP . . . T 10 220.047 251.175 145.118 1 91.41 ? O3A ATP 501 L 1 
HETATM 13 O O5' ATP . . . T 10 219.021 249.455 143.65 1 92.23 ? O5' ATP 501 L 1 
HETATM 14 C C5' ATP . . . T 10 218.162 248.875 142.646 1 92.35 ? C5' ATP 501 L 1 
HETATM 15 C C4' ATP . . . T 10 218.811 249.043 141.298 1 91.26 ? C4' ATP 501 L 1 
HETATM 16 O O4' ATP . . . T 10 218.819 247.737 140.68 1 87.05 ? O4' ATP 501 L 1 
HETATM 17 C C3' ATP . . . T 10 217.929 249.863 140.368 1 88.04 ? C3' ATP 501 L 1 
HETATM 18 O O3' ATP . . . T 10 218.696 250.072 139.191 1 84.07 ? O3' ATP 501 L 1 
HETATM 19 C C2' ATP . . . T 10 216.885 248.832 139.965 1 86.38 ? C2' ATP 501 L 1 
HETATM 20 O O2' ATP . . . T 10 216.431 249.226 138.68 1 90.57 ? O2' ATP 501 L 1 
HETATM 21 C C1' ATP . . . T 10 217.806 247.645 139.695 1 89.95 ? C1' ATP 501 L 1 
HETATM 22 N N9 ATP . . . T 10 217.137 246.367 139.904 1 88.34 ? N9 ATP 501 L 1 
HETATM 23 C C8 ATP . . . T 10 215.791 246.132 140.004 1 84.27 ? C8 ATP 501 L 1 
HETATM 24 N N7 ATP . . . T 10 215.479 244.872 140.185 1 82.09 ? N7 ATP 501 L 1 
HETATM 25 C C5 ATP . . . T 10 216.708 244.23 140.198 1 82.82 ? C5 ATP 501 L 1 
HETATM 26 C C6 ATP . . . T 10 217.073 242.879 140.352 1 83.61 ? C6 ATP 501 L 1 
HETATM 27 N N6 ATP . . . T 10 216.196 241.886 140.53 1 91.46 ? N6 ATP 501 L 1 
HETATM 28 N N1 ATP . . . T 10 218.388 242.574 140.314 1 82.73 ? N1 ATP 501 L 1 
HETATM 29 C C2 ATP . . . T 10 219.27 243.56 140.135 1 90.78 ? C2 ATP 501 L 1 
HETATM 30 N N3 ATP . . . T 10 219.046 244.867 139.984 1 94.87 ? N3 ATP 501 L 1 
HETATM 31 C C4 ATP . . . T 10 217.738 245.139 140.024 1 89.9 ? C4 ATP 501 L 1 
HETATM 32 H "H5'1" ATP . . . T 10 217.303 249.325 142.654 1 89.04 ? "H5'1" ATP 501 L 1 
HETATM 33 H "H5'2" ATP . . . T 10 218.037 247.931 142.831 1 89.35 ? "H5'2" ATP 501 L 1 
HETATM 34 H H4' ATP . . . T 10 219.7 249.423 141.383 1 89.73 ? H4' ATP 501 L 1 
HETATM 35 H H3' ATP . . . T 10 217.578 250.677 140.761 1 88.67 ? H3' ATP 501 L 1 
HETATM 36 H HO3' ATP . . . T 10 219.513 249.974 139.406 1 89.37 ? HO3' ATP 501 L 1 
HETATM 37 H H2' ATP . . . T 10 216.183 248.687 140.619 1 87.72 ? H2' ATP 501 L 1 
HETATM 38 H HO2' ATP . . . T 10 216.242 248.514 138.256 1 90.49 ? HO2' ATP 501 L 1 
HETATM 39 H H1' ATP . . . T 10 218.174 247.694 138.799 1 89.57 ? H1' ATP 501 L 1 
HETATM 40 H H8 ATP . . . T 10 215.154 246.809 139.956 1 88.3 ? H8 ATP 501 L 1 
HETATM 41 H HN61 ATP . . . T 10 215.364 242.063 140.656 1 89.78 ? HN61 ATP 501 L 1 
HETATM 42 H HN62 ATP . . . T 10 216.464 241.069 140.516 1 89.63 ? HN62 ATP 501 L 1 
HETATM 43 H H2 ATP . . . T 10 220.164 243.302 140.119 1 89.95 ? H2 ATP 501 L 1 
#
_model_server_stats.io_time_ms              100 
_model_server_stats.parse_time_ms           28 
_model_server_stats.create_model_time_ms    95 
_model_server_stats.query_time_ms           334 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           43 
#