data_9C61 # _model_server_result.job_id Pl8aiNoPaNRMuEtwyMODZQ _model_server_result.datetime_utc '2024-10-09 23:21:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9c61 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":2601}' # _entry.id 9C61 # _exptl.entry_id 9C61 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 343.395 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4R)-4-[4-(5-fluoro-1H-indol-3-yl)piperidine-1-carbonyl]piperidin-2-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9C61 _cell.length_a 79.162 _cell.length_b 103.064 _cell.length_c 115.301 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9C61 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C19 H22 F N3 O2' _chem_comp.formula_weight 343.395 _chem_comp.id A1AUU _chem_comp.mon_nstd_flag . _chem_comp.name (4R)-4-[4-(5-fluoro-1H-indol-3-yl)piperidine-1-carbonyl]piperidin-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O25 C4 A1AUU doub 1 n n C4 N3 A1AUU sing 2 n n C4 C5 A1AUU sing 3 n n N3 C2 A1AUU sing 4 n n C2 C1 A1AUU sing 5 n n C5 C6 A1AUU sing 6 n n C1 C6 A1AUU sing 7 n n C6 C7 A1AUU sing 8 n n O24 C7 A1AUU doub 9 n n C7 N8 A1AUU sing 10 n n N8 C13 A1AUU sing 11 n n N8 C9 A1AUU sing 12 n n C13 C12 A1AUU sing 13 n n C9 C10 A1AUU sing 14 n n C12 C11 A1AUU sing 15 n n C10 C11 A1AUU sing 16 n n C11 C14 A1AUU sing 17 n n C14 C15 A1AUU doub 18 n y C14 C22 A1AUU sing 19 n y C15 N16 A1AUU sing 20 n y C22 C21 A1AUU sing 21 n y C22 C17 A1AUU doub 22 n y N16 C17 A1AUU sing 23 n y C21 C20 A1AUU doub 24 n y C17 C18 A1AUU sing 25 n y C20 F23 A1AUU sing 26 n n C20 C19 A1AUU sing 27 n y C18 C19 A1AUU doub 28 n y N3 H1 A1AUU sing 29 n n C5 H2 A1AUU sing 30 n n C5 H3 A1AUU sing 31 n n C6 H4 A1AUU sing 32 n n C10 H5 A1AUU sing 33 n n C10 H6 A1AUU sing 34 n n C13 H7 A1AUU sing 35 n n C13 H8 A1AUU sing 36 n n C15 H9 A1AUU sing 37 n n C21 H10 A1AUU sing 38 n n C1 H11 A1AUU sing 39 n n C1 H12 A1AUU sing 40 n n C2 H13 A1AUU sing 41 n n C2 H14 A1AUU sing 42 n n C9 H15 A1AUU sing 43 n n C9 H16 A1AUU sing 44 n n C11 H17 A1AUU sing 45 n n C12 H18 A1AUU sing 46 n n C12 H19 A1AUU sing 47 n n N16 H20 A1AUU sing 48 n n C18 H21 A1AUU sing 49 n n C19 H22 A1AUU sing 50 n n # _atom_sites.entry_id 9C61 _atom_sites.fract_transf_matrix[1][1] 0.012632 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009703 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008673 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 A1AUU A 1 2601 2501 A1AUU LIG . D 3 UNX A 1 2602 1 UNX UNX . E 3 UNX A 1 2603 2 UNX UNX . F 2 A1AUU B 1 2601 2501 A1AUU LIG . G 4 HOH A 1 2701 9 HOH HOH . G 4 HOH A 2 2702 21 HOH HOH . G 4 HOH A 3 2703 7 HOH HOH . G 4 HOH A 4 2704 10 HOH HOH . G 4 HOH A 5 2705 28 HOH HOH . G 4 HOH A 6 2706 12 HOH HOH . G 4 HOH A 7 2707 25 HOH HOH . G 4 HOH A 8 2708 8 HOH HOH . G 4 HOH A 9 2709 15 HOH HOH . G 4 HOH A 10 2710 23 HOH HOH . G 4 HOH A 11 2711 16 HOH HOH . G 4 HOH A 12 2712 26 HOH HOH . G 4 HOH A 13 2713 20 HOH HOH . G 4 HOH A 14 2714 11 HOH HOH . G 4 HOH A 15 2715 22 HOH HOH . G 4 HOH A 16 2716 38 HOH HOH . G 4 HOH A 17 2717 1 HOH HOH . G 4 HOH A 18 2718 14 HOH HOH . G 4 HOH A 19 2719 13 HOH HOH . G 4 HOH A 20 2720 6 HOH HOH . G 4 HOH A 21 2721 24 HOH HOH . G 4 HOH A 22 2722 27 HOH HOH . G 4 HOH A 23 2723 43 HOH HOH . H 4 HOH B 1 2701 30 HOH HOH . H 4 HOH B 2 2702 31 HOH HOH . H 4 HOH B 3 2703 35 HOH HOH . H 4 HOH B 4 2704 2 HOH HOH . H 4 HOH B 5 2705 29 HOH HOH . H 4 HOH B 6 2706 32 HOH HOH . H 4 HOH B 7 2707 5 HOH HOH . H 4 HOH B 8 2708 37 HOH HOH . H 4 HOH B 9 2709 33 HOH HOH . H 4 HOH B 10 2710 3 HOH HOH . H 4 HOH B 11 2711 17 HOH HOH . H 4 HOH B 12 2712 34 HOH HOH . H 4 HOH B 13 2713 19 HOH HOH . H 4 HOH B 14 2714 41 HOH HOH . H 4 HOH B 15 2715 39 HOH HOH . H 4 HOH B 16 2716 4 HOH HOH . H 4 HOH B 17 2717 40 HOH HOH . H 4 HOH B 18 2718 44 HOH HOH . H 4 HOH B 19 2719 18 HOH HOH . H 4 HOH B 20 2720 42 HOH HOH . H 4 HOH B 21 2721 36 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N3 A1AUU . . . C 2 -5.422 0.938 -5.682 1 113.21 ? N3 A1AUU 2601 A 1 HETATM 2 C C4 A1AUU . . . C 2 -6.69 1.351 -5.697 1 114.38 ? C4 A1AUU 2601 A 1 HETATM 3 C C5 A1AUU . . . C 2 -7.134 2.297 -4.616 1 112.23 ? C5 A1AUU 2601 A 1 HETATM 4 C C6 A1AUU . . . C 2 -5.971 2.594 -3.655 1 109.91 ? C6 A1AUU 2601 A 1 HETATM 5 C C7 A1AUU . . . C 2 -6.31 3.696 -2.672 1 104.21 ? C7 A1AUU 2601 A 1 HETATM 6 C C10 A1AUU . . . C 2 -6.794 3.751 1.05 1 83.37 ? C10 A1AUU 2601 A 1 HETATM 7 C C13 A1AUU . . . C 2 -5.7 2.139 -0.851 1 87.63 ? C13 A1AUU 2601 A 1 HETATM 8 C C15 A1AUU . . . C 2 -3.531 3.376 2.827 1 69.82 ? C15 A1AUU 2601 A 1 HETATM 9 C C17 A1AUU . . . C 2 -4.332 4.076 4.789 1 69.19 ? C17 A1AUU 2601 A 1 HETATM 10 C C20 A1AUU . . . C 2 -6.861 4.461 5.728 1 75.03 ? C20 A1AUU 2601 A 1 HETATM 11 C C21 A1AUU . . . C 2 -6.724 3.984 4.441 1 72.63 ? C21 A1AUU 2601 A 1 HETATM 12 C C22 A1AUU . . . C 2 -5.428 3.788 3.953 1 72.24 ? C22 A1AUU 2601 A 1 HETATM 13 C C1 A1AUU . . . C 2 -4.696 2.932 -4.442 1 111.84 ? C1 A1AUU 2601 A 1 HETATM 14 C C2 A1AUU . . . C 2 -4.253 1.7 -5.213 1 113.04 ? C2 A1AUU 2601 A 1 HETATM 15 N N8 A1AUU . . . C 2 -6.203 3.427 -1.347 1 93.45 ? N8 A1AUU 2601 A 1 HETATM 16 C C9 A1AUU . . . C 2 -6.45 4.416 -0.283 1 88.22 ? C9 A1AUU 2601 A 1 HETATM 17 C C11 A1AUU . . . C 2 -5.682 2.801 1.533 1 79.56 ? C11 A1AUU 2601 A 1 HETATM 18 C C12 A1AUU . . . C 2 -4.808 2.348 0.362 1 82.8 ? C12 A1AUU 2601 A 1 HETATM 19 C C14 A1AUU . . . C 2 -4.889 3.337 2.695 1 73.09 ? C14 A1AUU 2601 A 1 HETATM 20 N N16 A1AUU . . . C 2 -3.189 3.816 4.076 1 68.41 ? N16 A1AUU 2601 A 1 HETATM 21 C C18 A1AUU . . . C 2 -4.505 4.551 6.088 1 68.71 ? C18 A1AUU 2601 A 1 HETATM 22 C C19 A1AUU . . . C 2 -5.792 4.747 6.565 1 71.44 ? C19 A1AUU 2601 A 1 HETATM 23 F F23 A1AUU . . . C 2 -8.12 4.713 6.179 1 78.59 ? F23 A1AUU 2601 A 1 HETATM 24 O O24 A1AUU . . . C 2 -6.617 4.809 -3.072 1 106.64 ? O24 A1AUU 2601 A 1 HETATM 25 O O25 A1AUU . . . C 2 -7.47 0.994 -6.577 1 116.48 ? O25 A1AUU 2601 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 25 #