data_9C65 # _model_server_result.job_id szkWlo4k_rgZD2SvPGylPA _model_server_result.datetime_utc '2025-06-19 12:38:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9c65 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 9C65 # _exptl.entry_id 9C65 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 309.27 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-acetyl-alpha-neuraminic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9C65 _cell.length_a 104.464 _cell.length_b 104.464 _cell.length_c 62.136 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9C65 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id E _struct_conn.ptnr1_label_atom_id C2 _struct_conn.ptnr1_label_comp_id SIA _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SIA _struct_conn.ptnr1_auth_seq_id 204 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id F _struct_conn.ptnr2_label_atom_id O17 _struct_conn.ptnr2_label_comp_id A1AUS _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id A1AUS _struct_conn.ptnr2_auth_seq_id 205 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.45 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C11 H19 N O9' _chem_comp.formula_weight 309.27 _chem_comp.id SIA _chem_comp.mon_nstd_flag . _chem_comp.name 'N-acetyl-alpha-neuraminic acid' _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms 'N-acetylneuraminic acid;sialic acid;alpha-sialic acid;O-SIALIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 SIA sing 345 n n C1 O1A SIA doub 346 n n C1 O1B SIA sing 347 n n C2 C3 SIA sing 348 n n C2 O2 SIA sing 349 n n C2 O6 SIA sing 350 n n C3 C4 SIA sing 351 n n C3 H32 SIA sing 352 n n C3 H31 SIA sing 353 n n C4 C5 SIA sing 354 n n C4 O4 SIA sing 355 n n C4 H4 SIA sing 356 n n C5 C6 SIA sing 357 n n C5 N5 SIA sing 358 n n C5 H5 SIA sing 359 n n C6 C7 SIA sing 360 n n C6 O6 SIA sing 361 n n C6 H6 SIA sing 362 n n C7 C8 SIA sing 363 n n C7 O7 SIA sing 364 n n C7 H7 SIA sing 365 n n C8 C9 SIA sing 366 n n C8 O8 SIA sing 367 n n C8 H8 SIA sing 368 n n C9 O9 SIA sing 369 n n C9 H92 SIA sing 370 n n C9 H91 SIA sing 371 n n C10 C11 SIA sing 372 n n C10 N5 SIA sing 373 n n C10 O10 SIA doub 374 n n C11 H111 SIA sing 375 n n C11 H113 SIA sing 376 n n C11 H112 SIA sing 377 n n N5 HN5 SIA sing 378 n n O1B HO1B SIA sing 379 n n O2 HO2 SIA sing 380 n n O4 HO4 SIA sing 381 n n O7 HO7 SIA sing 382 n n O8 HO8 SIA sing 383 n n O9 HO9 SIA sing 384 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version SIA DNeup5Aca 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 SIA 'N-acetyl-a-D-neuraminic acid' 'COMMON NAME' GMML 1 SIA a-D-Neup5Ac 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 SIA Neu5Ac 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 9C65 _atom_sites.fract_transf_matrix[1][1] 0.009573 _atom_sites.fract_transf_matrix[1][2] 0.005527 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011054 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016094 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 201 201 GOL GOL . C 3 MPD A 1 202 202 MPD MPD . D 2 GOL A 1 203 203 GOL GOL . E 4 SIA A 1 204 1 SIA SIA . F 5 A1AUS A 1 205 2 A1AUS Z1Z . G 6 HOH A 1 301 246 HOH HOH . G 6 HOH A 2 302 249 HOH HOH . G 6 HOH A 3 303 282 HOH HOH . G 6 HOH A 4 304 220 HOH HOH . G 6 HOH A 5 305 232 HOH HOH . G 6 HOH A 6 306 280 HOH HOH . G 6 HOH A 7 307 248 HOH HOH . G 6 HOH A 8 308 261 HOH HOH . G 6 HOH A 9 309 212 HOH HOH . G 6 HOH A 10 310 208 HOH HOH . G 6 HOH A 11 311 260 HOH HOH . G 6 HOH A 12 312 285 HOH HOH . G 6 HOH A 13 313 236 HOH HOH . G 6 HOH A 14 314 305 HOH HOH . G 6 HOH A 15 315 266 HOH HOH . G 6 HOH A 16 316 211 HOH HOH . G 6 HOH A 17 317 241 HOH HOH . G 6 HOH A 18 318 258 HOH HOH . G 6 HOH A 19 319 306 HOH HOH . G 6 HOH A 20 320 253 HOH HOH . G 6 HOH A 21 321 216 HOH HOH . G 6 HOH A 22 322 294 HOH HOH . G 6 HOH A 23 323 209 HOH HOH . G 6 HOH A 24 324 239 HOH HOH . G 6 HOH A 25 325 215 HOH HOH . G 6 HOH A 26 326 257 HOH HOH . G 6 HOH A 27 327 247 HOH HOH . G 6 HOH A 28 328 233 HOH HOH . G 6 HOH A 29 329 230 HOH HOH . G 6 HOH A 30 330 207 HOH HOH . G 6 HOH A 31 331 256 HOH HOH . G 6 HOH A 32 332 229 HOH HOH . G 6 HOH A 33 333 296 HOH HOH . G 6 HOH A 34 334 206 HOH HOH . G 6 HOH A 35 335 234 HOH HOH . G 6 HOH A 36 336 227 HOH HOH . G 6 HOH A 37 337 213 HOH HOH . G 6 HOH A 38 338 288 HOH HOH . G 6 HOH A 39 339 240 HOH HOH . G 6 HOH A 40 340 250 HOH HOH . G 6 HOH A 41 341 235 HOH HOH . G 6 HOH A 42 342 243 HOH HOH . G 6 HOH A 43 343 244 HOH HOH . G 6 HOH A 44 344 204 HOH HOH . G 6 HOH A 45 345 226 HOH HOH . G 6 HOH A 46 346 252 HOH HOH . G 6 HOH A 47 347 224 HOH HOH . G 6 HOH A 48 348 210 HOH HOH . G 6 HOH A 49 349 284 HOH HOH . G 6 HOH A 50 350 205 HOH HOH . G 6 HOH A 51 351 283 HOH HOH . G 6 HOH A 52 352 217 HOH HOH . G 6 HOH A 53 353 223 HOH HOH . G 6 HOH A 54 354 291 HOH HOH . G 6 HOH A 55 355 231 HOH HOH . G 6 HOH A 56 356 301 HOH HOH . G 6 HOH A 57 357 287 HOH HOH . G 6 HOH A 58 358 290 HOH HOH . G 6 HOH A 59 359 277 HOH HOH . G 6 HOH A 60 360 218 HOH HOH . G 6 HOH A 61 361 228 HOH HOH . G 6 HOH A 62 362 238 HOH HOH . G 6 HOH A 63 363 214 HOH HOH . G 6 HOH A 64 364 300 HOH HOH . G 6 HOH A 65 365 295 HOH HOH . G 6 HOH A 66 366 281 HOH HOH . G 6 HOH A 67 367 219 HOH HOH . G 6 HOH A 68 368 221 HOH HOH . G 6 HOH A 69 369 268 HOH HOH . G 6 HOH A 70 370 265 HOH HOH . G 6 HOH A 71 371 289 HOH HOH . G 6 HOH A 72 372 262 HOH HOH . G 6 HOH A 73 373 278 HOH HOH . G 6 HOH A 74 374 222 HOH HOH . G 6 HOH A 75 375 274 HOH HOH . G 6 HOH A 76 376 275 HOH HOH . G 6 HOH A 77 377 225 HOH HOH . G 6 HOH A 78 378 276 HOH HOH . G 6 HOH A 79 379 297 HOH HOH . G 6 HOH A 80 380 292 HOH HOH . G 6 HOH A 81 381 293 HOH HOH . G 6 HOH A 82 382 269 HOH HOH . G 6 HOH A 83 383 251 HOH HOH . G 6 HOH A 84 384 254 HOH HOH . G 6 HOH A 85 385 298 HOH HOH . G 6 HOH A 86 386 259 HOH HOH . G 6 HOH A 87 387 255 HOH HOH . G 6 HOH A 88 388 302 HOH HOH . G 6 HOH A 89 389 279 HOH HOH . G 6 HOH A 90 390 273 HOH HOH . G 6 HOH A 91 391 272 HOH HOH . G 6 HOH A 92 392 264 HOH HOH . G 6 HOH A 93 393 263 HOH HOH . G 6 HOH A 94 394 242 HOH HOH . G 6 HOH A 95 395 245 HOH HOH . G 6 HOH A 96 396 286 HOH HOH . G 6 HOH A 97 397 303 HOH HOH . G 6 HOH A 98 398 237 HOH HOH . G 6 HOH A 99 399 267 HOH HOH . G 6 HOH A 100 400 304 HOH HOH . G 6 HOH A 101 401 299 HOH HOH . G 6 HOH A 102 402 271 HOH HOH . G 6 HOH A 103 403 270 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SIA . . . E 4 22.417 -28.748 -14.627 1 61.53 0 C1 SIA 204 A 1 HETATM 2 C C2 SIA . . . E 4 21.827 -28.053 -15.871 1 55 0 C2 SIA 204 A 1 HETATM 3 C C3 SIA . . . E 4 20.941 -26.9 -15.437 1 39.74 0 C3 SIA 204 A 1 HETATM 4 C C4 SIA . . . E 4 21.766 -25.813 -14.817 1 44.25 0 C4 SIA 204 A 1 HETATM 5 C C5 SIA . . . E 4 22.901 -25.478 -15.791 1 46.03 0 C5 SIA 204 A 1 HETATM 6 C C6 SIA . . . E 4 23.726 -26.736 -16.05 1 51.17 0 C6 SIA 204 A 1 HETATM 7 C C7 SIA . . . E 4 24.968 -26.519 -16.885 1 45.76 0 C7 SIA 204 A 1 HETATM 8 C C8 SIA . . . E 4 25.539 -27.834 -17.423 1 40.92 0 C8 SIA 204 A 1 HETATM 9 C C9 SIA . . . E 4 26.869 -27.728 -18.151 1 34.3 0 C9 SIA 204 A 1 HETATM 10 C C10 SIA . . . E 4 24.205 -23.336 -15.818 1 54.52 0 C10 SIA 204 A 1 HETATM 11 C C11 SIA . . . E 4 24.095 -23.219 -17.306 1 55.36 0 C11 SIA 204 A 1 HETATM 12 N N5 SIA . . . E 4 23.758 -24.445 -15.231 1 50.75 0 N5 SIA 204 A 1 HETATM 13 O O1A SIA . . . E 4 23.455 -29.405 -14.652 1 50.63 0 O1A SIA 204 A 1 HETATM 14 O O1B SIA . . . E 4 21.803 -28.655 -13.64 1 56.67 0 O1B SIA 204 A 1 HETATM 15 O O4 SIA . . . E 4 20.959 -24.671 -14.467 1 39 0 O4 SIA 204 A 1 HETATM 16 O O6 SIA . . . E 4 22.884 -27.669 -16.772 1 46.54 0 O6 SIA 204 A 1 HETATM 17 O O7 SIA . . . E 4 24.557 -25.708 -17.975 1 54.62 0 O7 SIA 204 A 1 HETATM 18 O O8 SIA . . . E 4 25.709 -28.687 -16.317 1 46.52 0 O8 SIA 204 A 1 HETATM 19 O O9 SIA . . . E 4 27.401 -29.024 -18.51 1 31.19 0 O9 SIA 204 A 1 HETATM 20 O O10 SIA . . . E 4 24.747 -22.457 -15.139 1 57.16 0 O10 SIA 204 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 20 #