data_9C6C # _model_server_result.job_id 9CwUyupgx5XxK9zTMnceWA _model_server_result.datetime_utc '2025-07-07 23:36:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9c6c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":701}' # _entry.id 9C6C # _exptl.entry_id 9C6C _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9C6C _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9C6C _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 K N N ? 3 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 533 A ASP 533 1_555 G MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? metalc ? metalc2 B OD1 ASP 533 B ASP 533 1_555 I MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc3 C OD1 ASP 533 C ASP 533 1_555 J MG MG . C MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc4 D OD1 ASP 533 D ASP 533 1_555 L MG MG . D MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc5 E OD1 ASP 533 E ASP 533 1_555 M MG MG . E MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc6 F OD1 ASP 533 F ASP 533 1_555 O MG MG . F MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 9C6C _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 MG A 1 701 1 MG MG . H 3 ATP B 1 701 701 ATP ATP . I 2 MG B 1 702 2 MG MG . J 2 MG C 1 701 3 MG MG . K 3 ATP D 1 701 701 ATP ATP . L 2 MG D 1 702 4 MG MG . M 2 MG E 1 701 5 MG MG . N 3 ATP F 1 701 701 ATP ATP . O 2 MG F 1 702 6 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . K 3 221.044 144.601 163.478 1 146.64 ? PG ATP 701 D 1 HETATM 2 O O1G ATP . . . K 3 220.702 144.713 162.011 1 140.03 ? O1G ATP 701 D 1 HETATM 3 O O2G ATP . . . K 3 220.496 145.796 164.221 1 135.08 ? O2G ATP 701 D 1 HETATM 4 O O3G ATP . . . K 3 220.435 143.34 164.04 1 138.86 ? O3G ATP 701 D 1 HETATM 5 P PB ATP . . . K 3 223.392 144.082 165.076 1 153.39 ? PB ATP 701 D 1 HETATM 6 O O1B ATP . . . K 3 222.935 142.686 165.423 1 137.23 ? O1B ATP 701 D 1 HETATM 7 O O2B ATP . . . K 3 224.894 144.109 164.925 1 138.78 ? O2B ATP 701 D 1 HETATM 8 O O3B ATP . . . K 3 222.679 144.543 163.666 1 146.82 ? O3B ATP 701 D 1 HETATM 9 P PA ATP . . . K 3 222.258 144.642 167.689 1 153.06 ? PA ATP 701 D 1 HETATM 10 O O1A ATP . . . K 3 223.141 143.605 168.341 1 139.85 ? O1A ATP 701 D 1 HETATM 11 O O2A ATP . . . K 3 222.118 145.833 168.606 1 139.13 ? O2A ATP 701 D 1 HETATM 12 O O3A ATP . . . K 3 222.927 145.124 166.264 1 145.72 ? O3A ATP 701 D 1 HETATM 13 O O5' ATP . . . K 3 220.774 143.994 167.391 1 141.67 ? O5' ATP 701 D 1 HETATM 14 C C5' ATP . . . K 3 219.718 144.28 168.262 1 138.24 ? C5' ATP 701 D 1 HETATM 15 C C4' ATP . . . K 3 218.4 143.774 167.594 1 141.62 ? C4' ATP 701 D 1 HETATM 16 O O4' ATP . . . K 3 217.376 144.21 168.213 1 140.53 ? O4' ATP 701 D 1 HETATM 17 C C3' ATP . . . K 3 218.274 144.366 166.156 1 141.22 ? C3' ATP 701 D 1 HETATM 18 O O3' ATP . . . K 3 218.552 143.409 165.23 1 141.71 ? O3' ATP 701 D 1 HETATM 19 C C2' ATP . . . K 3 216.826 144.804 166.028 1 137.15 ? C2' ATP 701 D 1 HETATM 20 O O2' ATP . . . K 3 216.237 144.216 164.772 1 132.09 ? O2' ATP 701 D 1 HETATM 21 C C1' ATP . . . K 3 216.227 144.311 167.075 1 134.15 ? C1' ATP 701 D 1 HETATM 22 N N9 ATP . . . K 3 215.162 145.171 167.522 1 133.7 ? N9 ATP 701 D 1 HETATM 23 C C8 ATP . . . K 3 214.931 145.491 168.784 1 136.97 ? C8 ATP 701 D 1 HETATM 24 N N7 ATP . . . K 3 213.88 146.292 168.853 1 138.86 ? N7 ATP 701 D 1 HETATM 25 C C5 ATP . . . K 3 213.428 146.485 167.605 1 134.69 ? C5 ATP 701 D 1 HETATM 26 C C6 ATP . . . K 3 212.367 147.22 167.052 1 131.25 ? C6 ATP 701 D 1 HETATM 27 N N6 ATP . . . K 3 211.484 147.986 167.911 1 134.12 ? N6 ATP 701 D 1 HETATM 28 N N1 ATP . . . K 3 212.18 147.207 165.742 1 130.24 ? N1 ATP 701 D 1 HETATM 29 C C2 ATP . . . K 3 212.977 146.512 164.943 1 133.42 ? C2 ATP 701 D 1 HETATM 30 N N3 ATP . . . K 3 213.986 145.808 165.432 1 135.99 ? N3 ATP 701 D 1 HETATM 31 C C4 ATP . . . K 3 214.238 145.774 166.749 1 135.7 ? C4 ATP 701 D 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #