data_9C6F
#
_model_server_result.job_id            PM-NSUi_-eGXUwaX03fA-g 
_model_server_result.datetime_utc      '2025-07-07 07:37:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9c6f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":701}' 
#
_entry.id    9C6F 
#
_exptl.entry_id    9C6F 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9C6F 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9C6F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 K N N 
? 2 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 533 A ASP 533 1_555 H MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? 
metalc ? metalc2 B OD1 ASP 533 B ASP 533 1_555 I MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc3 D OD1 ASP 533 D ASP 533 1_555 L MG MG . D MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? 
metalc ? metalc4 F OD1 ASP 533 F ASP 533 1_555 O MG MG . F MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     9C6F 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 ATP A 1 701 701 ATP ATP . 
H 3 MG A 1 702 1 MG MG . 
I 3 MG B 1 701 2 MG MG . 
J 3 MG C 1 701 3 MG MG . 
K 2 ATP D 1 701 701 ATP ATP . 
L 3 MG D 1 702 4 MG MG . 
M 2 ATP E 1 701 701 ATP ATP . 
N 3 MG E 1 702 5 MG MG . 
O 3 MG F 1 701 6 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . M 2 204.781 216.795 178.445 1 227.51 ? PG ATP 701 E 1 
HETATM 2 O O1G ATP . . . M 2 204.308 216.58 179.862 1 224.82 ? O1G ATP 701 E 1 
HETATM 3 O O2G ATP . . . M 2 204.768 215.484 177.696 1 224.64 ? O2G ATP 701 E 1 
HETATM 4 O O3G ATP . . . M 2 203.863 217.773 177.752 1 225.84 ? O3G ATP 701 E 1 
HETATM 5 P PB ATP . . . M 2 207 218.079 177.121 1 227.54 ? PB ATP 701 E 1 
HETATM 6 O O1B ATP . . . M 2 206.197 219.294 176.723 1 225.33 ? O1B ATP 701 E 1 
HETATM 7 O O2B ATP . . . M 2 208.424 218.479 177.427 1 225.08 ? O2B ATP 701 E 1 
HETATM 8 O O3B ATP . . . M 2 206.312 217.4 178.454 1 225.47 ? O3B ATP 701 E 1 
HETATM 9 P PA ATP . . . M 2 206.066 217.134 174.536 1 228.7 ? PA ATP 701 E 1 
HETATM 10 O O1A ATP . . . M 2 206.254 218.515 173.955 1 225.59 ? O1A ATP 701 E 1 
HETATM 11 O O2A ATP . . . M 2 206.494 216.1 173.522 1 224.81 ? O2A ATP 701 E 1 
HETATM 12 O O3A ATP . . . M 2 206.977 216.974 175.9 1 226.21 ? O3A ATP 701 E 1 
HETATM 13 O O5' ATP . . . M 2 204.48 216.906 174.918 1 225.81 ? O5' ATP 701 E 1 
HETATM 14 C C5' ATP . . . M 2 203.654 216.248 174.002 1 223.95 ? C5' ATP 701 E 1 
HETATM 15 C C4' ATP . . . M 2 202.194 216.265 174.559 1 224.41 ? C4' ATP 701 E 1 
HETATM 16 O O4' ATP . . . M 2 201.462 215.451 173.907 1 223.79 ? O4' ATP 701 E 1 
HETATM 17 C C3' ATP . . . M 2 202.175 215.746 176.03 1 224.54 ? C3' ATP 701 E 1 
HETATM 18 O O3' ATP . . . M 2 201.942 216.777 176.886 1 225.51 ? O3' ATP 701 E 1 
HETATM 19 C C2' ATP . . . M 2 201.032 214.748 176.097 1 223.62 ? C2' ATP 701 E 1 
HETATM 20 O O2' ATP . . . M 2 200.133 215.091 177.258 1 222.09 ? O2' ATP 701 E 1 
HETATM 21 C C1' ATP . . . M 2 200.384 214.883 174.975 1 223.78 ? C1' ATP 701 E 1 
HETATM 22 N N9 ATP . . . M 2 199.874 213.615 174.515 1 223.44 ? N9 ATP 701 E 1 
HETATM 23 C C8 ATP . . . M 2 199.957 213.174 173.271 1 223.75 ? C8 ATP 701 E 1 
HETATM 24 N N7 ATP . . . M 2 199.392 211.981 173.185 1 223.47 ? N7 ATP 701 E 1 
HETATM 25 C C5 ATP . . . M 2 198.935 211.653 174.403 1 222.86 ? C5 ATP 701 E 1 
HETATM 26 C C6 ATP . . . M 2 198.259 210.539 174.928 1 222.22 ? C6 ATP 701 E 1 
HETATM 27 N N6 ATP . . . M 2 197.916 209.419 174.072 1 222.47 ? N6 ATP 701 E 1 
HETATM 28 N N1 ATP . . . M 2 197.939 210.521 176.212 1 221.34 ? N1 ATP 701 E 1 
HETATM 29 C C2 ATP . . . M 2 198.246 211.535 177.008 1 221.56 ? C2 ATP 701 E 1 
HETATM 30 N N3 ATP . . . M 2 198.88 212.6 176.547 1 221.69 ? N3 ATP 701 E 1 
HETATM 31 C C4 ATP . . . M 2 199.238 212.69 175.257 1 222.7 ? C4 ATP 701 E 1 
#
_model_server_stats.io_time_ms              100 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    52 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           31 
#