data_9C6R
#
_model_server_result.job_id            zW9JmgS8Im3MM1SdLllbJQ 
_model_server_result.datetime_utc      '2025-01-10 07:16:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9c6r 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"GA","auth_seq_id":1201}' 
#
_entry.id    9C6R 
#
_exptl.entry_id    9C6R 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              669.204 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'Cryptophycin 52' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9C6R 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9C6R 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    16-meric 
_pdbx_struct_assembly.oligomeric_count      16 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 R N N 
? 4 U N N 
? 4 X N N 
? 4 Z N N 
? 4 DA N N 
? 4 GA N N 
? 4 JA N N 
? 4 MA N N 
#
_chem_comp.formula           'C36 H45 Cl N2 O8' 
_chem_comp.formula_weight    669.204 
_chem_comp.id                YGY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'Cryptophycin 52' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     (3S,10S,13Z,16S)-10-[(3-chloro-4-methoxyphenyl)methyl]-6,6-dimethyl-3-(2-methylpropyl)-16-{(1S)-1-[(2R,3R)-3-phenyloxiran-2-yl]ethyl}-1,4-dioxa-8,11-diazacyclohexadec-13-ene-2,5,9,12-tetrone 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C25 C24 YGY doub 469 n y 
C25 C26 YGY sing 470 n y 
C24 C23 YGY sing 471 n y 
C26 C27 YGY doub 472 n y 
C23 C22 YGY doub 473 n y 
C27 C22 YGY sing 474 n y 
C17 C15 YGY sing 475 n n 
C22 C21 YGY sing 476 n n 
C15 C16 YGY sing 477 n n 
C15 C14 YGY sing 478 n n 
C21 O7 YGY sing 479 n n 
C21 C20 YGY sing 480 n n 
O7 C20 YGY sing 481 n n 
C14 C12 YGY sing 482 n n 
C20 C18 YGY sing 483 n n 
C12 C11 YGY sing 484 n n 
C12 O5 YGY sing 485 n n 
C11 O3 YGY sing 486 n n 
C11 O4 YGY doub 487 n n 
C18 C10 YGY sing 488 n n 
C18 C19 YGY sing 489 n n 
O5 C13 YGY sing 490 n n 
O3 C10 YGY sing 491 n n 
O6 C13 YGY doub 492 n n 
C13 C2 YGY sing 493 n n 
C10 C9 YGY sing 494 n n 
C49 C2 YGY sing 495 n n 
C2 C1 YGY sing 496 n n 
C2 C3 YGY sing 497 n n 
C9 C8 YGY sing 498 n n 
O2 C6 YGY doub 499 n n 
C3 N1 YGY sing 500 n n 
C8 C7 YGY doub 501 z n 
C6 C7 YGY sing 502 n n 
C6 N2 YGY sing 503 n n 
N1 C4 YGY sing 504 n n 
N2 C5 YGY sing 505 n n 
C4 C5 YGY sing 506 n n 
C4 O1 YGY doub 507 n n 
C5 C28 YGY sing 508 n n 
C34 C33 YGY doub 509 n y 
C34 C29 YGY sing 510 n y 
C33 C32 YGY sing 511 n y 
C28 C29 YGY sing 512 n n 
C29 C30 YGY doub 513 n y 
C32 O8 YGY sing 514 n n 
C32 C31 YGY doub 515 n y 
O8 C35 YGY sing 516 n n 
C30 C31 YGY sing 517 n y 
C31 CL1 YGY sing 518 n n 
C8 H1 YGY sing 519 n n 
C3 H2 YGY sing 520 n n 
C3 H3 YGY sing 521 n n 
N2 H4 YGY sing 522 n n 
C1 H5 YGY sing 523 n n 
C1 H6 YGY sing 524 n n 
C1 H7 YGY sing 525 n n 
N1 H8 YGY sing 526 n n 
C5 H9 YGY sing 527 n n 
C7 H10 YGY sing 528 n n 
C9 H11 YGY sing 529 n n 
C9 H12 YGY sing 530 n n 
C10 H13 YGY sing 531 n n 
C14 H14 YGY sing 532 n n 
C14 H15 YGY sing 533 n n 
C12 H16 YGY sing 534 n n 
C15 H17 YGY sing 535 n n 
C16 H18 YGY sing 536 n n 
C16 H19 YGY sing 537 n n 
C16 H20 YGY sing 538 n n 
C20 H21 YGY sing 539 n n 
C19 H22 YGY sing 540 n n 
C19 H23 YGY sing 541 n n 
C19 H24 YGY sing 542 n n 
C18 H25 YGY sing 543 n n 
C17 H26 YGY sing 544 n n 
C17 H27 YGY sing 545 n n 
C17 H28 YGY sing 546 n n 
C21 H29 YGY sing 547 n n 
C23 H30 YGY sing 548 n n 
C24 H31 YGY sing 549 n n 
C25 H32 YGY sing 550 n n 
C26 H33 YGY sing 551 n n 
C27 H34 YGY sing 552 n n 
C28 H35 YGY sing 553 n n 
C28 H36 YGY sing 554 n n 
C30 H37 YGY sing 555 n n 
C33 H38 YGY sing 556 n n 
C34 H39 YGY sing 557 n n 
C35 H40 YGY sing 558 n n 
C35 H41 YGY sing 559 n n 
C35 H42 YGY sing 560 n n 
C49 H43 YGY sing 561 n n 
C49 H44 YGY sing 562 n n 
C49 H45 YGY sing 563 n n 
#
_atom_sites.entry_id                     9C6R 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
Q 3 GTP A 1 601 601 GTP GTP . 
R 4 YGY B 1 1201 1201 YGY YGY . 
S 5 GDP B 1 1202 1202 GDP GDP . 
T 3 GTP F 1 601 601 GTP GTP . 
U 4 YGY G 1 1201 1201 YGY YGY . 
V 5 GDP G 1 1202 1202 GDP GDP . 
W 3 GTP K 1 601 601 GTP GTP . 
X 4 YGY L 1 1201 1201 YGY YGY . 
Y 5 GDP L 1 1202 1202 GDP GDP . 
Z 4 YGY P 1 1201 1201 YGY YGY . 
AA 3 GTP P 1 1202 601 GTP GTP . 
BA 5 GDP Q 1 501 1202 GDP GDP . 
CA 3 GTP U 1 601 601 GTP GTP . 
DA 4 YGY V 1 1201 1201 YGY YGY . 
EA 5 GDP V 1 1202 1202 GDP GDP . 
FA 3 GTP Z 1 601 601 GTP GTP . 
GA 4 YGY a 1 1201 1201 YGY YGY . 
HA 5 GDP a 1 1202 1202 GDP GDP . 
IA 3 GTP e 1 601 601 GTP GTP . 
JA 4 YGY f 1 1201 1201 YGY YGY . 
KA 5 GDP f 1 1202 1202 GDP GDP . 
LA 3 GTP j 1 601 601 GTP GTP . 
MA 4 YGY k 1 1201 1201 YGY YGY . 
NA 5 GDP k 1 1202 1202 GDP GDP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C8 YGY . . . GA 4 349.43 192.892 277.394 1 53.19 ? C8 YGY 1201 a 1 
HETATM 2 C C3 YGY . . . GA 4 353.295 188.443 277.766 1 59.39 ? C3 YGY 1201 a 1 
HETATM 3 C C4 YGY . . . GA 4 353.012 189.905 279.733 1 55.6 ? C4 YGY 1201 a 1 
HETATM 4 N N2 YGY . . . GA 4 351.349 191.639 280.141 1 57.17 ? N2 YGY 1201 a 1 
HETATM 5 C C1 YGY . . . GA 4 354.28 189.18 275.532 1 60.08 ? C1 YGY 1201 a 1 
HETATM 6 N N1 YGY . . . GA 4 353.054 189.754 278.409 1 50.05 ? N1 YGY 1201 a 1 
HETATM 7 C C2 YGY . . . GA 4 353.065 188.511 276.227 1 64.59 ? C2 YGY 1201 a 1 
HETATM 8 C C5 YGY . . . GA 4 352.755 191.307 280.284 1 63.49 ? C5 YGY 1201 a 1 
HETATM 9 C C6 YGY . . . GA 4 351.029 192.192 278.966 1 60.6 ? C6 YGY 1201 a 1 
HETATM 10 C C7 YGY . . . GA 4 349.641 192.574 278.679 1 54.67 ? C7 YGY 1201 a 1 
HETATM 11 C C9 YGY . . . GA 4 348.146 193.347 276.672 1 50.42 ? C9 YGY 1201 a 1 
HETATM 12 C C10 YGY . . . GA 4 348.109 192.803 275.23 1 46.88 ? C10 YGY 1201 a 1 
HETATM 13 O O1 YGY . . . GA 4 353.174 188.95 280.487 1 57.3 ? O1 YGY 1201 a 1 
HETATM 14 C C13 YGY . . . GA 4 351.786 189.36 275.975 1 61.53 ? C13 YGY 1201 a 1 
HETATM 15 C C14 YGY . . . GA 4 351.025 190.641 272.602 1 56.66 ? C14 YGY 1201 a 1 
HETATM 16 C C12 YGY . . . GA 4 351.017 190.759 274.13 1 60.14 ? C12 YGY 1201 a 1 
HETATM 17 C C11 YGY . . . GA 4 349.586 191.085 274.55 1 59.72 ? C11 YGY 1201 a 1 
HETATM 18 C C15 YGY . . . GA 4 352.203 189.787 272.048 1 59.56 ? C15 YGY 1201 a 1 
HETATM 19 C C16 YGY . . . GA 4 352.964 190.562 270.947 1 53.59 ? C16 YGY 1201 a 1 
HETATM 20 C C20 YGY . . . GA 4 347.536 193.434 272.857 1 47.82 ? C20 YGY 1201 a 1 
HETATM 21 C C19 YGY . . . GA 4 346.162 194.27 274.716 1 52.33 ? C19 YGY 1201 a 1 
HETATM 22 C C18 YGY . . . GA 4 347.586 193.898 274.31 1 43.22 ? C18 YGY 1201 a 1 
HETATM 23 C C17 YGY . . . GA 4 351.688 188.439 271.495 1 63.39 ? C17 YGY 1201 a 1 
HETATM 24 C C21 YGY . . . GA 4 348.097 194.325 271.853 1 56.53 ? C21 YGY 1201 a 1 
HETATM 25 C C22 YGY . . . GA 4 348.677 193.716 270.559 1 60.84 ? C22 YGY 1201 a 1 
HETATM 26 C C23 YGY . . . GA 4 350.016 193.347 270.505 1 59.85 ? C23 YGY 1201 a 1 
HETATM 27 C C24 YGY . . . GA 4 350.545 192.791 269.344 1 60.39 ? C24 YGY 1201 a 1 
HETATM 28 C C25 YGY . . . GA 4 349.735 192.609 268.229 1 58.48 ? C25 YGY 1201 a 1 
HETATM 29 C C26 YGY . . . GA 4 348.395 192.979 268.281 1 59.9 ? C26 YGY 1201 a 1 
HETATM 30 C C27 YGY . . . GA 4 347.865 193.532 269.444 1 60.92 ? C27 YGY 1201 a 1 
HETATM 31 C C28 YGY . . . GA 4 353.25 191.474 281.726 1 65.83 ? C28 YGY 1201 a 1 
HETATM 32 C C29 YGY . . . GA 4 352.734 192.786 282.368 1 61.12 ? C29 YGY 1201 a 1 
HETATM 33 C C30 YGY . . . GA 4 352.961 194.02 281.765 1 44.73 ? C30 YGY 1201 a 1 
HETATM 34 C C31 YGY . . . GA 4 352.474 195.176 282.372 1 48.42 ? C31 YGY 1201 a 1 
HETATM 35 C C32 YGY . . . GA 4 351.77 195.103 283.568 1 50.14 ? C32 YGY 1201 a 1 
HETATM 36 C C33 YGY . . . GA 4 351.545 193.867 284.164 1 61.24 ? C33 YGY 1201 a 1 
HETATM 37 C C34 YGY . . . GA 4 352.03 192.712 283.564 1 66.51 ? C34 YGY 1201 a 1 
HETATM 38 C C35 YGY . . . GA 4 351.387 196.376 285.474 1 61.71 ? C35 YGY 1201 a 1 
HETATM 39 C C49 YGY . . . GA 4 352.872 187.088 275.652 1 57.7 ? C49 YGY 1201 a 1 
HETATM 40 O O2 YGY . . . GA 4 351.874 192.39 278.087 1 71.19 ? O2 YGY 1201 a 1 
HETATM 41 O O3 YGY . . . GA 4 349.381 192.387 274.804 1 48.79 ? O3 YGY 1201 a 1 
HETATM 42 O O4 YGY . . . GA 4 348.722 190.297 274.672 1 67.57 ? O4 YGY 1201 a 1 
HETATM 43 O O5 YGY . . . GA 4 351.407 189.474 274.686 1 66.23 ? O5 YGY 1201 a 1 
HETATM 44 O O6 YGY . . . GA 4 351.193 189.845 276.876 1 50.08 ? O6 YGY 1201 a 1 
HETATM 45 O O7 YGY . . . GA 4 346.664 194.22 272.021 1 55.17 ? O7 YGY 1201 a 1 
HETATM 46 O O8 YGY . . . GA 4 351.341 196.301 284.066 1 49.44 ? O8 YGY 1201 a 1 
HETATM 47 CL CL1 YGY . . . GA 4 352.755 196.774 281.629 1 83.95 ? CL1 YGY 1201 a 1 
#
_model_server_stats.io_time_ms              25 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    57 
_model_server_stats.query_time_ms           339 
_model_server_stats.encode_time_ms          20 
_model_server_stats.element_count           47 
#