data_9C6R # _model_server_result.job_id Ue-AgdAUBdiVetGY8vphFw _model_server_result.datetime_utc '2025-01-10 07:19:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9c6r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Z","auth_seq_id":1201}' # _entry.id 9C6R # _exptl.entry_id 9C6R _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 669.204 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Cryptophycin 52' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9C6R _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9C6R _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 16-meric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 R N N ? 4 U N N ? 4 X N N ? 4 Z N N ? 4 DA N N ? 4 GA N N ? 4 JA N N ? 4 MA N N # _chem_comp.formula 'C36 H45 Cl N2 O8' _chem_comp.formula_weight 669.204 _chem_comp.id YGY _chem_comp.mon_nstd_flag . _chem_comp.name 'Cryptophycin 52' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (3S,10S,13Z,16S)-10-[(3-chloro-4-methoxyphenyl)methyl]-6,6-dimethyl-3-(2-methylpropyl)-16-{(1S)-1-[(2R,3R)-3-phenyloxiran-2-yl]ethyl}-1,4-dioxa-8,11-diazacyclohexadec-13-ene-2,5,9,12-tetrone # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C25 C24 YGY doub 469 n y C25 C26 YGY sing 470 n y C24 C23 YGY sing 471 n y C26 C27 YGY doub 472 n y C23 C22 YGY doub 473 n y C27 C22 YGY sing 474 n y C17 C15 YGY sing 475 n n C22 C21 YGY sing 476 n n C15 C16 YGY sing 477 n n C15 C14 YGY sing 478 n n C21 O7 YGY sing 479 n n C21 C20 YGY sing 480 n n O7 C20 YGY sing 481 n n C14 C12 YGY sing 482 n n C20 C18 YGY sing 483 n n C12 C11 YGY sing 484 n n C12 O5 YGY sing 485 n n C11 O3 YGY sing 486 n n C11 O4 YGY doub 487 n n C18 C10 YGY sing 488 n n C18 C19 YGY sing 489 n n O5 C13 YGY sing 490 n n O3 C10 YGY sing 491 n n O6 C13 YGY doub 492 n n C13 C2 YGY sing 493 n n C10 C9 YGY sing 494 n n C49 C2 YGY sing 495 n n C2 C1 YGY sing 496 n n C2 C3 YGY sing 497 n n C9 C8 YGY sing 498 n n O2 C6 YGY doub 499 n n C3 N1 YGY sing 500 n n C8 C7 YGY doub 501 z n C6 C7 YGY sing 502 n n C6 N2 YGY sing 503 n n N1 C4 YGY sing 504 n n N2 C5 YGY sing 505 n n C4 C5 YGY sing 506 n n C4 O1 YGY doub 507 n n C5 C28 YGY sing 508 n n C34 C33 YGY doub 509 n y C34 C29 YGY sing 510 n y C33 C32 YGY sing 511 n y C28 C29 YGY sing 512 n n C29 C30 YGY doub 513 n y C32 O8 YGY sing 514 n n C32 C31 YGY doub 515 n y O8 C35 YGY sing 516 n n C30 C31 YGY sing 517 n y C31 CL1 YGY sing 518 n n C8 H1 YGY sing 519 n n C3 H2 YGY sing 520 n n C3 H3 YGY sing 521 n n N2 H4 YGY sing 522 n n C1 H5 YGY sing 523 n n C1 H6 YGY sing 524 n n C1 H7 YGY sing 525 n n N1 H8 YGY sing 526 n n C5 H9 YGY sing 527 n n C7 H10 YGY sing 528 n n C9 H11 YGY sing 529 n n C9 H12 YGY sing 530 n n C10 H13 YGY sing 531 n n C14 H14 YGY sing 532 n n C14 H15 YGY sing 533 n n C12 H16 YGY sing 534 n n C15 H17 YGY sing 535 n n C16 H18 YGY sing 536 n n C16 H19 YGY sing 537 n n C16 H20 YGY sing 538 n n C20 H21 YGY sing 539 n n C19 H22 YGY sing 540 n n C19 H23 YGY sing 541 n n C19 H24 YGY sing 542 n n C18 H25 YGY sing 543 n n C17 H26 YGY sing 544 n n C17 H27 YGY sing 545 n n C17 H28 YGY sing 546 n n C21 H29 YGY sing 547 n n C23 H30 YGY sing 548 n n C24 H31 YGY sing 549 n n C25 H32 YGY sing 550 n n C26 H33 YGY sing 551 n n C27 H34 YGY sing 552 n n C28 H35 YGY sing 553 n n C28 H36 YGY sing 554 n n C30 H37 YGY sing 555 n n C33 H38 YGY sing 556 n n C34 H39 YGY sing 557 n n C35 H40 YGY sing 558 n n C35 H41 YGY sing 559 n n C35 H42 YGY sing 560 n n C49 H43 YGY sing 561 n n C49 H44 YGY sing 562 n n C49 H45 YGY sing 563 n n # _atom_sites.entry_id 9C6R _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Q 3 GTP A 1 601 601 GTP GTP . R 4 YGY B 1 1201 1201 YGY YGY . S 5 GDP B 1 1202 1202 GDP GDP . T 3 GTP F 1 601 601 GTP GTP . U 4 YGY G 1 1201 1201 YGY YGY . V 5 GDP G 1 1202 1202 GDP GDP . W 3 GTP K 1 601 601 GTP GTP . X 4 YGY L 1 1201 1201 YGY YGY . Y 5 GDP L 1 1202 1202 GDP GDP . Z 4 YGY P 1 1201 1201 YGY YGY . AA 3 GTP P 1 1202 601 GTP GTP . BA 5 GDP Q 1 501 1202 GDP GDP . CA 3 GTP U 1 601 601 GTP GTP . DA 4 YGY V 1 1201 1201 YGY YGY . EA 5 GDP V 1 1202 1202 GDP GDP . FA 3 GTP Z 1 601 601 GTP GTP . GA 4 YGY a 1 1201 1201 YGY YGY . HA 5 GDP a 1 1202 1202 GDP GDP . IA 3 GTP e 1 601 601 GTP GTP . JA 4 YGY f 1 1201 1201 YGY YGY . KA 5 GDP f 1 1202 1202 GDP GDP . LA 3 GTP j 1 601 601 GTP GTP . MA 4 YGY k 1 1201 1201 YGY YGY . NA 5 GDP k 1 1202 1202 GDP GDP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 YGY . . . Z 4 192.883 198.37 277.405 1 54.08 ? C8 YGY 1201 P 1 HETATM 2 C C3 YGY . . . Z 4 188.431 194.503 277.756 1 60.02 ? C3 YGY 1201 P 1 HETATM 3 C C4 YGY . . . Z 4 189.892 194.771 279.728 1 56.25 ? C4 YGY 1201 P 1 HETATM 4 N N2 YGY . . . Z 4 191.626 196.436 280.143 1 57.76 ? N2 YGY 1201 P 1 HETATM 5 C C1 YGY . . . Z 4 189.172 193.516 275.525 1 60.12 ? C1 YGY 1201 P 1 HETATM 6 N N1 YGY . . . Z 4 189.74 194.742 278.403 1 50.88 ? N1 YGY 1201 P 1 HETATM 7 C C2 YGY . . . Z 4 188.505 194.733 276.218 1 65.4 ? C2 YGY 1201 P 1 HETATM 8 C C5 YGY . . . Z 4 191.295 195.029 280.277 1 63.84 ? C5 YGY 1201 P 1 HETATM 9 C C6 YGY . . . Z 4 192.183 196.763 278.971 1 61.12 ? C6 YGY 1201 P 1 HETATM 10 C C7 YGY . . . Z 4 192.565 198.153 278.69 1 55.37 ? C7 YGY 1201 P 1 HETATM 11 C C9 YGY . . . Z 4 193.338 199.656 276.686 1 51.65 ? C9 YGY 1201 P 1 HETATM 12 C C10 YGY . . . Z 4 192.799 199.692 275.243 1 47.41 ? C10 YGY 1201 P 1 HETATM 13 O O1 YGY . . . Z 4 188.939 194.601 280.481 1 58.57 ? O1 YGY 1201 P 1 HETATM 14 C C13 YGY . . . Z 4 189.358 196.01 275.969 1 62.76 ? C13 YGY 1201 P 1 HETATM 15 C C14 YGY . . . Z 4 190.659 196.775 272.602 1 57.34 ? C14 YGY 1201 P 1 HETATM 16 C C12 YGY . . . Z 4 190.766 196.782 274.13 1 60.68 ? C12 YGY 1201 P 1 HETATM 17 C C11 YGY . . . Z 4 191.086 198.213 274.554 1 59.81 ? C11 YGY 1201 P 1 HETATM 18 C C15 YGY . . . Z 4 189.794 195.609 272.042 1 60.32 ? C15 YGY 1201 P 1 HETATM 19 C C16 YGY . . . Z 4 190.564 194.841 270.942 1 54.6 ? C16 YGY 1201 P 1 HETATM 20 C C20 YGY . . . Z 4 193.434 200.263 272.869 1 48.25 ? C20 YGY 1201 P 1 HETATM 21 C C19 YGY . . . Z 4 194.267 201.64 274.73 1 52.84 ? C19 YGY 1201 P 1 HETATM 22 C C18 YGY . . . Z 4 193.895 200.216 274.324 1 43.91 ? C18 YGY 1201 P 1 HETATM 23 C C17 YGY . . . Z 4 188.453 196.139 271.486 1 62.98 ? C17 YGY 1201 P 1 HETATM 24 C C21 YGY . . . Z 4 194.332 199.701 271.872 1 57.26 ? C21 YGY 1201 P 1 HETATM 25 C C22 YGY . . . Z 4 193.734 199.109 270.578 1 61.19 ? C22 YGY 1201 P 1 HETATM 26 C C23 YGY . . . Z 4 193.396 197.761 270.525 1 60.99 ? C23 YGY 1201 P 1 HETATM 27 C C24 YGY . . . Z 4 192.853 197.219 269.364 1 61.56 ? C24 YGY 1201 P 1 HETATM 28 C C25 YGY . . . Z 4 192.651 198.027 268.249 1 58.79 ? C25 YGY 1201 P 1 HETATM 29 C C26 YGY . . . Z 4 192.991 199.375 268.3 1 59.15 ? C26 YGY 1201 P 1 HETATM 30 C C27 YGY . . . Z 4 193.533 199.916 269.463 1 60.31 ? C27 YGY 1201 P 1 HETATM 31 C C28 YGY . . . Z 4 191.469 194.525 281.716 1 66.13 ? C28 YGY 1201 P 1 HETATM 32 C C29 YGY . . . Z 4 192.784 195.047 282.348 1 61.76 ? C29 YGY 1201 P 1 HETATM 33 C C30 YGY . . . Z 4 194.015 194.799 281.745 1 45.64 ? C30 YGY 1201 P 1 HETATM 34 C C31 YGY . . . Z 4 195.178 195.288 282.338 1 48.95 ? C31 YGY 1201 P 1 HETATM 35 C C32 YGY . . . Z 4 195.115 196.016 283.519 1 49.92 ? C32 YGY 1201 P 1 HETATM 36 C C33 YGY . . . Z 4 193.883 196.262 284.115 1 61.45 ? C33 YGY 1201 P 1 HETATM 37 C C34 YGY . . . Z 4 192.721 195.775 283.53 1 66.67 ? C34 YGY 1201 P 1 HETATM 38 C C35 YGY . . . Z 4 196.399 196.452 285.41 1 61.58 ? C35 YGY 1201 P 1 HETATM 39 C C49 YGY . . . Z 4 187.084 194.93 275.638 1 58.38 ? C49 YGY 1201 P 1 HETATM 40 O O2 YGY . . . Z 4 192.383 195.922 278.088 1 71.41 ? O2 YGY 1201 P 1 HETATM 41 O O3 YGY . . . Z 4 192.386 198.419 274.816 1 48.91 ? O3 YGY 1201 P 1 HETATM 42 O O4 YGY . . . Z 4 190.295 199.076 274.672 1 67.3 ? O4 YGY 1201 P 1 HETATM 43 O O5 YGY . . . Z 4 189.479 196.388 274.68 1 67.62 ? O5 YGY 1201 P 1 HETATM 44 O O6 YGY . . . Z 4 189.841 196.601 276.872 1 51.56 ? O6 YGY 1201 P 1 HETATM 45 O O7 YGY . . . Z 4 194.22 201.135 272.032 1 55.66 ? O7 YGY 1201 P 1 HETATM 46 O O8 YGY . . . Z 4 196.32 196.444 284.002 1 49.55 ? O8 YGY 1201 P 1 HETATM 47 CL CL1 YGY . . . Z 4 196.77 194.979 281.594 1 85.01 ? CL1 YGY 1201 P 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 87 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 47 #