data_9C6T # _model_server_result.job_id pEgGHxw3XN7HiAefcMgWvw _model_server_result.datetime_utc '2025-09-30 20:05:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9c6t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 9C6T # _exptl.entry_id 9C6T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description alpha-D-mannopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9C6T _cell.length_a 114.255 _cell.length_b 114.255 _cell.length_c 168.221 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9C6T _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 12 A CYS 229 1_555 A SG CYS 39 A CYS 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 27 A CYS 244 1_555 A SG CYS 31 A CYS 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 80 A CYS 297 1_555 A SG CYS 209 A CYS 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 A SG CYS 105 A CYS 322 1_555 A SG CYS 168 A CYS 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf5 A SG CYS 107 A CYS 324 1_555 A SG CYS 228 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 A SG CYS 151 A CYS 368 1_555 A SG CYS 169 A CYS 386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf7 B SG CYS 12 B CYS 229 1_555 B SG CYS 39 B CYS 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf8 B SG CYS 27 B CYS 244 1_555 B SG CYS 31 B CYS 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf9 B SG CYS 80 B CYS 297 1_555 B SG CYS 209 B CYS 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf10 B SG CYS 105 B CYS 322 1_555 B SG CYS 168 B CYS 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf11 B SG CYS 107 B CYS 324 1_555 B SG CYS 228 B CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf12 B SG CYS 151 B CYS 368 1_555 B SG CYS 169 B CYS 386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 A CD1 TRP 6 A TRP 223 1_555 D C1 MAN . A MAN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.495 ? covale ? covale2 A CD1 TRP 9 A TRP 226 1_555 C C1 MAN . A MAN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.493 ? covale ? covale3 B CD1 TRP 6 B TRP 223 1_555 E C1 MAN . B MAN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.487 ? covale ? covale4 B CD1 TRP 9 B TRP 226 1_555 F C1 MAN . B MAN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.493 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id MAN _chem_comp.mon_nstd_flag . _chem_comp.name alpha-D-mannopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-D-mannose;D-mannose;mannose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MAN sing 216 n n C1 O1 MAN sing 217 n n C1 O5 MAN sing 218 n n C1 H1 MAN sing 219 n n C2 C3 MAN sing 220 n n C2 O2 MAN sing 221 n n C2 H2 MAN sing 222 n n C3 C4 MAN sing 223 n n C3 O3 MAN sing 224 n n C3 H3 MAN sing 225 n n C4 C5 MAN sing 226 n n C4 O4 MAN sing 227 n n C4 H4 MAN sing 228 n n C5 C6 MAN sing 229 n n C5 O5 MAN sing 230 n n C5 H5 MAN sing 231 n n C6 O6 MAN sing 232 n n C6 H61 MAN sing 233 n n C6 H62 MAN sing 234 n n O1 HO1 MAN sing 235 n n O2 HO2 MAN sing 236 n n O3 HO3 MAN sing 237 n n O4 HO4 MAN sing 238 n n O6 HO6 MAN sing 239 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version MAN DManpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 MAN a-D-mannopyranose 'COMMON NAME' GMML 1 MAN a-D-Manp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 MAN Man 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 9C6T _atom_sites.fract_transf_matrix[1][1] 0.008752 _atom_sites.fract_transf_matrix[1][2] 0.005053 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010106 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005945 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MAN A 1 501 501 MAN MAN . D 2 MAN A 1 502 901 MAN MAN . E 2 MAN B 1 601 601 MAN MAN . F 2 MAN B 1 602 701 MAN MAN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MAN . . . D 2 -94.477 29.385 18.997 1 119.83 ? C1 MAN 502 A 1 HETATM 2 C C2 MAN . . . D 2 -93.958 30.421 17.943 1 119.09 ? C2 MAN 502 A 1 HETATM 3 C C3 MAN . . . D 2 -94.995 30.77 16.841 1 126.88 ? C3 MAN 502 A 1 HETATM 4 C C4 MAN . . . D 2 -96.476 30.809 17.333 1 123.28 ? C4 MAN 502 A 1 HETATM 5 C C5 MAN . . . D 2 -96.809 29.622 18.267 1 127.57 ? C5 MAN 502 A 1 HETATM 6 C C6 MAN . . . D 2 -96.88 28.276 17.528 1 121.5 ? C6 MAN 502 A 1 HETATM 7 O O2 MAN . . . D 2 -92.814 29.902 17.243 1 110.93 ? O2 MAN 502 A 1 HETATM 8 O O3 MAN . . . D 2 -94.87 29.925 15.69 1 125.72 ? O3 MAN 502 A 1 HETATM 9 O O4 MAN . . . D 2 -96.78 32.054 17.964 1 123.47 ? O4 MAN 502 A 1 HETATM 10 O O5 MAN . . . D 2 -95.838 29.536 19.348 1 130.83 ? O5 MAN 502 A 1 HETATM 11 O O6 MAN . . . D 2 -97.692 27.359 18.266 1 106.24 ? O6 MAN 502 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 11 #