data_9C7M # _model_server_result.job_id 0_3GCjVoOgOG4f0D6ZXA4g _model_server_result.datetime_utc '2024-11-07 05:30:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9c7m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 9C7M # _exptl.entry_id 9C7M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 418.307 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2E,6E)-12-fluoro-11-(fluoromethyl)-3,7-dimethyldodeca-2,6,10-trien-1-yl trihydrogen diphosphate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9C7M _cell.length_a 180.53 _cell.length_b 180.53 _cell.length_c 55.861 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9C7M _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G 1 1 B,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 80 A ASP 80 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc2 A OD1 ASP 80 A ASP 80 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? metalc ? metalc3 A OD1 ASN 219 A ASN 219 1_555 F MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc4 A OG SER 223 A SER 223 1_555 F MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc5 A OE2 GLU 227 A GLU 227 1_555 F MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? metalc ? metalc6 C O3A FDF . A FDF 401 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc7 C O2A FDF . A FDF 401 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.965 ? metalc ? metalc8 C O1A FDF . A FDF 401 1_555 F MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc9 D MG MG . A MG 402 1_555 G O HOH . A HOH 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.803 ? metalc ? metalc10 E MG MG . A MG 403 1_555 G O HOH . A HOH 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? # _chem_comp.formula 'C15 H26 F2 O7 P2' _chem_comp.formula_weight 418.307 _chem_comp.id FDF _chem_comp.mon_nstd_flag . _chem_comp.name '(2E,6E)-12-fluoro-11-(fluoromethyl)-3,7-dimethyldodeca-2,6,10-trien-1-yl trihydrogen diphosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2A PA FDF doub 83 n n O3A PA FDF sing 84 n n PA O1A FDF sing 85 n n PA O1 FDF sing 86 n n O2B PB FDF doub 87 n n O1B PB FDF sing 88 n n O3B PB FDF sing 89 n n PB O3A FDF sing 90 n n C1 O1 FDF sing 91 n n C1 C2 FDF sing 92 n n C1 H1 FDF sing 93 e n C1 H1A FDF sing 94 n n O1A HO1A FDF sing 95 n n O1B HO1B FDF sing 96 n n C2 C3 FDF doub 97 n n C2 H2 FDF sing 98 n n C3 C4 FDF sing 99 n n C3 C5 FDF sing 100 n n O3B HO3B FDF sing 101 n n C4 H4 FDF sing 102 n n C4 H4A FDF sing 103 n n C4 H4B FDF sing 104 n n C6 C5 FDF sing 105 n n C5 H5 FDF sing 106 n n C5 H5A FDF sing 107 n n C7 C6 FDF sing 108 n n C6 H6 FDF sing 109 n n C6 H6A FDF sing 110 n n C8 C7 FDF doub 111 n n C7 H7 FDF sing 112 e n C9 C8 FDF sing 113 n n C8 C10 FDF sing 114 n n C11 C9 FDF sing 115 n n C9 H9 FDF sing 116 n n C9 H9A FDF sing 117 n n C10 H10 FDF sing 118 n n C10 H10A FDF sing 119 n n C10 H10B FDF sing 120 n n C11 C12 FDF sing 121 n n C11 H11 FDF sing 122 n n C11 H11A FDF sing 123 n n C13 C12 FDF doub 124 n n C12 H12 FDF sing 125 n n C15 C13 FDF sing 126 n n C13 C14 FDF sing 127 n n F2 C14 FDF sing 128 n n C14 H14 FDF sing 129 n n C14 H14A FDF sing 130 n n C15 F1 FDF sing 131 n n C15 H15 FDF sing 132 n n C15 H15A FDF sing 133 n n # _atom_sites.entry_id 9C7M _atom_sites.fract_transf_matrix[1][1] 0.005539 _atom_sites.fract_transf_matrix[1][2] 0.003198 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006396 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017902 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FDF A 1 401 401 FDF DFF . D 3 MG A 1 402 1 MG MG . E 3 MG A 1 403 2 MG MG . F 3 MG A 1 404 3 MG MG . G 4 HOH A 1 501 15 HOH HOH . G 4 HOH A 2 502 52 HOH HOH . G 4 HOH A 3 503 7 HOH HOH . G 4 HOH A 4 504 19 HOH HOH . G 4 HOH A 5 505 2 HOH HOH . G 4 HOH A 6 506 5 HOH HOH . G 4 HOH A 7 507 26 HOH HOH . G 4 HOH A 8 508 16 HOH HOH . G 4 HOH A 9 509 9 HOH HOH . G 4 HOH A 10 510 53 HOH HOH . G 4 HOH A 11 511 10 HOH HOH . G 4 HOH A 12 512 6 HOH HOH . G 4 HOH A 13 513 20 HOH HOH . G 4 HOH A 14 514 4 HOH HOH . G 4 HOH A 15 515 21 HOH HOH . G 4 HOH A 16 516 14 HOH HOH . G 4 HOH A 17 517 3 HOH HOH . G 4 HOH A 18 518 24 HOH HOH . G 4 HOH A 19 519 12 HOH HOH . G 4 HOH A 20 520 22 HOH HOH . G 4 HOH A 21 521 17 HOH HOH . G 4 HOH A 22 522 18 HOH HOH . G 4 HOH A 23 523 13 HOH HOH . G 4 HOH A 24 524 48 HOH HOH . G 4 HOH A 25 525 25 HOH HOH . G 4 HOH A 26 526 51 HOH HOH . G 4 HOH A 27 527 50 HOH HOH . G 4 HOH A 28 528 46 HOH HOH . G 4 HOH A 29 529 40 HOH HOH . G 4 HOH A 30 530 23 HOH HOH . G 4 HOH A 31 531 54 HOH HOH . H 4 HOH B 1 401 31 HOH HOH . H 4 HOH B 2 402 28 HOH HOH . H 4 HOH B 3 403 1 HOH HOH . H 4 HOH B 4 404 39 HOH HOH . H 4 HOH B 5 405 41 HOH HOH . H 4 HOH B 6 406 36 HOH HOH . H 4 HOH B 7 407 30 HOH HOH . H 4 HOH B 8 408 57 HOH HOH . H 4 HOH B 9 409 35 HOH HOH . H 4 HOH B 10 410 11 HOH HOH . H 4 HOH B 11 411 42 HOH HOH . H 4 HOH B 12 412 32 HOH HOH . H 4 HOH B 13 413 56 HOH HOH . H 4 HOH B 14 414 43 HOH HOH . H 4 HOH B 15 415 27 HOH HOH . H 4 HOH B 16 416 47 HOH HOH . H 4 HOH B 17 417 44 HOH HOH . H 4 HOH B 18 418 38 HOH HOH . H 4 HOH B 19 419 55 HOH HOH . H 4 HOH B 20 420 33 HOH HOH . H 4 HOH B 21 421 45 HOH HOH . H 4 HOH B 22 422 29 HOH HOH . H 4 HOH B 23 423 37 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FDF . . . C 2 -76.735 13.956 6.665 1 115.41 ? PA FDF 401 A 1 HETATM 2 P PB FDF . . . C 2 -77.413 11.433 5.528 1 117.15 ? PB FDF 401 A 1 HETATM 3 C C1 FDF . . . C 2 -78.308 14.295 8.697 1 104.3 ? C1 FDF 401 A 1 HETATM 4 O O1 FDF . . . C 2 -77.366 13.446 8.055 1 103.51 ? O1 FDF 401 A 1 HETATM 5 O O1A FDF . . . C 2 -75.229 13.863 6.762 1 106.66 ? O1A FDF 401 A 1 HETATM 6 O O1B FDF . . . C 2 -76.959 10.956 6.887 1 113.55 ? O1B FDF 401 A 1 HETATM 7 C C2 FDF . . . C 2 -79.732 13.952 8.308 1 99.4 ? C2 FDF 401 A 1 HETATM 8 O O2A FDF . . . C 2 -77.154 15.393 6.447 1 109.76 ? O2A FDF 401 A 1 HETATM 9 O O2B FDF . . . C 2 -76.55 10.801 4.459 1 118.11 ? O2B FDF 401 A 1 HETATM 10 C C3 FDF . . . C 2 -80.769 14.705 8.733 1 93.39 ? C3 FDF 401 A 1 HETATM 11 O O3A FDF . . . C 2 -77.26 13.041 5.442 1 119.04 ? O3A FDF 401 A 1 HETATM 12 O O3B FDF . . . C 2 -78.86 11.052 5.319 1 109.13 ? O3B FDF 401 A 1 HETATM 13 C C4 FDF . . . C 2 -80.505 15.908 9.614 1 84.5 ? C4 FDF 401 A 1 HETATM 14 C C5 FDF . . . C 2 -82.169 14.295 8.305 1 83.86 ? C5 FDF 401 A 1 HETATM 15 C C6 FDF . . . C 2 -83.171 14.767 9.35 1 82.26 ? C6 FDF 401 A 1 HETATM 16 C C7 FDF . . . C 2 -83.265 13.841 10.546 1 85.79 ? C7 FDF 401 A 1 HETATM 17 C C8 FDF . . . C 2 -83.782 14.218 11.742 1 81.55 ? C8 FDF 401 A 1 HETATM 18 C C9 FDF . . . C 2 -83.786 13.134 12.81 1 85.3 ? C9 FDF 401 A 1 HETATM 19 C C10 FDF . . . C 2 -84.305 15.629 11.954 1 81.79 ? C10 FDF 401 A 1 HETATM 20 C C11 FDF . . . C 2 -82.83 11.976 12.543 1 87.27 ? C11 FDF 401 A 1 HETATM 21 C C12 FDF . . . C 2 -81.612 12.019 13.433 1 87.75 ? C12 FDF 401 A 1 HETATM 22 C C13 FDF . . . C 2 -80.396 11.773 12.911 1 92.63 ? C13 FDF 401 A 1 HETATM 23 C C14 FDF . . . C 2 -80.252 11.462 11.425 1 98.64 ? C14 FDF 401 A 1 HETATM 24 C C15 FDF . . . C 2 -79.224 11.834 13.87 1 98.05 ? C15 FDF 401 A 1 HETATM 25 F F1 FDF . . . C 2 -78.044 11.414 13.313 1 108.84 ? F1 FDF 401 A 1 HETATM 26 F F2 FDF . . . C 2 -79.017 10.99 11.069 1 104.63 ? F2 FDF 401 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 26 #