data_9C7M # _model_server_result.job_id vbKtVgos0VoklSPaJw2Onw _model_server_result.datetime_utc '2024-11-07 05:36:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9c7m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 9C7M # _exptl.entry_id 9C7M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9C7M _cell.length_a 180.53 _cell.length_b 180.53 _cell.length_c 55.861 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9C7M _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G 1 1 B,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 80 A ASP 80 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc2 A OD1 ASP 80 A ASP 80 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? metalc ? metalc3 A OD1 ASN 219 A ASN 219 1_555 F MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc4 A OG SER 223 A SER 223 1_555 F MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc5 A OE2 GLU 227 A GLU 227 1_555 F MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? metalc ? metalc6 C O3A FDF . A FDF 401 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc7 C O2A FDF . A FDF 401 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.965 ? metalc ? metalc8 C O1A FDF . A FDF 401 1_555 F MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc9 D MG MG . A MG 402 1_555 G O HOH . A HOH 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.803 ? metalc ? metalc10 E MG MG . A MG 403 1_555 G O HOH . A HOH 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 9C7M _atom_sites.fract_transf_matrix[1][1] 0.005539 _atom_sites.fract_transf_matrix[1][2] 0.003198 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006396 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017902 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FDF A 1 401 401 FDF DFF . D 3 MG A 1 402 1 MG MG . E 3 MG A 1 403 2 MG MG . F 3 MG A 1 404 3 MG MG . G 4 HOH A 1 501 15 HOH HOH . G 4 HOH A 2 502 52 HOH HOH . G 4 HOH A 3 503 7 HOH HOH . G 4 HOH A 4 504 19 HOH HOH . G 4 HOH A 5 505 2 HOH HOH . G 4 HOH A 6 506 5 HOH HOH . G 4 HOH A 7 507 26 HOH HOH . G 4 HOH A 8 508 16 HOH HOH . G 4 HOH A 9 509 9 HOH HOH . G 4 HOH A 10 510 53 HOH HOH . G 4 HOH A 11 511 10 HOH HOH . G 4 HOH A 12 512 6 HOH HOH . G 4 HOH A 13 513 20 HOH HOH . G 4 HOH A 14 514 4 HOH HOH . G 4 HOH A 15 515 21 HOH HOH . G 4 HOH A 16 516 14 HOH HOH . G 4 HOH A 17 517 3 HOH HOH . G 4 HOH A 18 518 24 HOH HOH . G 4 HOH A 19 519 12 HOH HOH . G 4 HOH A 20 520 22 HOH HOH . G 4 HOH A 21 521 17 HOH HOH . G 4 HOH A 22 522 18 HOH HOH . G 4 HOH A 23 523 13 HOH HOH . G 4 HOH A 24 524 48 HOH HOH . G 4 HOH A 25 525 25 HOH HOH . G 4 HOH A 26 526 51 HOH HOH . G 4 HOH A 27 527 50 HOH HOH . G 4 HOH A 28 528 46 HOH HOH . G 4 HOH A 29 529 40 HOH HOH . G 4 HOH A 30 530 23 HOH HOH . G 4 HOH A 31 531 54 HOH HOH . H 4 HOH B 1 401 31 HOH HOH . H 4 HOH B 2 402 28 HOH HOH . H 4 HOH B 3 403 1 HOH HOH . H 4 HOH B 4 404 39 HOH HOH . H 4 HOH B 5 405 41 HOH HOH . H 4 HOH B 6 406 36 HOH HOH . H 4 HOH B 7 407 30 HOH HOH . H 4 HOH B 8 408 57 HOH HOH . H 4 HOH B 9 409 35 HOH HOH . H 4 HOH B 10 410 11 HOH HOH . H 4 HOH B 11 411 42 HOH HOH . H 4 HOH B 12 412 32 HOH HOH . H 4 HOH B 13 413 56 HOH HOH . H 4 HOH B 14 414 43 HOH HOH . H 4 HOH B 15 415 27 HOH HOH . H 4 HOH B 16 416 47 HOH HOH . H 4 HOH B 17 417 44 HOH HOH . H 4 HOH B 18 418 38 HOH HOH . H 4 HOH B 19 419 55 HOH HOH . H 4 HOH B 20 420 33 HOH HOH . H 4 HOH B 21 421 45 HOH HOH . H 4 HOH B 22 422 29 HOH HOH . H 4 HOH B 23 423 37 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -78.065 _atom_site.Cartn_y 14.355 _atom_site.Cartn_z 3.442 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 94.93 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 402 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 78 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #