data_9C88
#
_model_server_result.job_id            suxpxquD8yCutLPNoA91WA 
_model_server_result.datetime_utc      '2024-10-18 05:23:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9c88 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Z","auth_seq_id":500}' 
#
_entry.id    9C88 
#
_exptl.entry_id    9C88 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9C88 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9C88 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    21-meric 
_pdbx_struct_assembly.oligomeric_count      21 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 V N N 
? 4 X N N 
? 4 Z N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B OG1 THR 90 A THR 126 1_555 W MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? 
metalc ? metalc2 B OD2 ASP 148 A ASP 184 1_555 W MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.909 ? 
metalc ? metalc3 V O2G ATP . A ATP 500 1_555 W MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
metalc ? metalc4 V O2B ATP . A ATP 500 1_555 W MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? 
metalc ? metalc5 C OG1 THR 90 B THR 126 1_555 Y MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? 
metalc ? metalc6 C OD2 ASP 148 B ASP 184 1_555 Y MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.71 ? 
metalc ? metalc7 X O3G ATP . B ATP 500 1_555 Y MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? 
metalc ? metalc8 X O3B ATP . B ATP 500 1_555 Y MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.854 ? 
metalc ? metalc9 D OG1 THR 90 C THR 126 1_555 AA MG MG . C MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
metalc ? metalc10 D OD2 ASP 148 C ASP 184 1_555 AA MG MG . C MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? 
metalc ? metalc11 Z O2G ATP . C ATP 500 1_555 AA MG MG . C MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.827 ? 
metalc ? metalc12 Z O2B ATP . C ATP 500 1_555 AA MG MG . C MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? 
metalc ? metalc13 Z O3B ATP . C ATP 500 1_555 AA MG MG . C MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.824 ? 
metalc ? metalc14 E OG1 THR 90 D THR 126 1_555 CA MG MG . D MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? 
metalc ? metalc15 BA O3B ADP . D ADP 500 1_555 CA MG MG . D MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.909 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 114 n n 
PG O2G ATP sing 115 n n 
PG O3G ATP sing 116 n n 
PG O3B ATP sing 117 n n 
O2G HOG2 ATP sing 118 n n 
O3G HOG3 ATP sing 119 n n 
PB O1B ATP doub 120 n n 
PB O2B ATP sing 121 n n 
PB O3B ATP sing 122 n n 
PB O3A ATP sing 123 n n 
O2B HOB2 ATP sing 124 n n 
PA O1A ATP doub 125 n n 
PA O2A ATP sing 126 n n 
PA O3A ATP sing 127 n n 
PA O5' ATP sing 128 n n 
O2A HOA2 ATP sing 129 n n 
O5' C5' ATP sing 130 n n 
C5' C4' ATP sing 131 n n 
C5' "H5'1" ATP sing 132 n n 
C5' "H5'2" ATP sing 133 n n 
C4' O4' ATP sing 134 n n 
C4' C3' ATP sing 135 n n 
C4' H4' ATP sing 136 n n 
O4' C1' ATP sing 137 n n 
C3' O3' ATP sing 138 n n 
C3' C2' ATP sing 139 n n 
C3' H3' ATP sing 140 n n 
O3' HO3' ATP sing 141 n n 
C2' O2' ATP sing 142 n n 
C2' C1' ATP sing 143 n n 
C2' H2' ATP sing 144 n n 
O2' HO2' ATP sing 145 n n 
C1' N9 ATP sing 146 n n 
C1' H1' ATP sing 147 n n 
N9 C8 ATP sing 148 n y 
N9 C4 ATP sing 149 n y 
C8 N7 ATP doub 150 n y 
C8 H8 ATP sing 151 n n 
N7 C5 ATP sing 152 n y 
C5 C6 ATP sing 153 n y 
C5 C4 ATP doub 154 n y 
C6 N6 ATP sing 155 n n 
C6 N1 ATP doub 156 n y 
N6 HN61 ATP sing 157 n n 
N6 HN62 ATP sing 158 n n 
N1 C2 ATP sing 159 n y 
C2 N3 ATP doub 160 n y 
C2 H2 ATP sing 161 n n 
N3 C4 ATP sing 162 n y 
#
_atom_sites.entry_id                     9C88 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
V 4 ATP A 1 500 500 ATP ATP . 
W 5 MG A 1 501 501 MG MG . 
X 4 ATP B 1 500 500 ATP ATP . 
Y 5 MG B 1 501 501 MG MG . 
Z 4 ATP C 1 500 500 ATP ATP . 
AA 5 MG C 1 501 501 MG MG . 
BA 6 ADP D 1 500 500 ADP ADP . 
CA 5 MG D 1 501 501 MG MG . 
DA 6 ADP E 1 500 500 ADP ADP . 
EA 6 ADP F 1 500 500 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . Z 4 168.538 154.472 172.888 1 136.53 ? PG ATP 500 C 1 
HETATM 2 O O1G ATP . . . Z 4 167.932 155.797 172.565 1 129.71 ? O1G ATP 500 C 1 
HETATM 3 O O2G ATP . . . Z 4 167.673 153.608 173.812 1 127.77 ? O2G ATP 500 C 1 
HETATM 4 O O3G ATP . . . Z 4 168.896 153.648 171.646 1 123.15 ? O3G ATP 500 C 1 
HETATM 5 P PB ATP . . . Z 4 170.948 155.811 174.111 1 129.73 ? PB ATP 500 C 1 
HETATM 6 O O1B ATP . . . Z 4 171.31 156.645 172.948 1 116.25 ? O1B ATP 500 C 1 
HETATM 7 O O2B ATP . . . Z 4 170.323 156.561 175.29 1 131.04 ? O2B ATP 500 C 1 
HETATM 8 O O3B ATP . . . Z 4 169.93 154.65 173.678 1 137.44 ? O3B ATP 500 C 1 
HETATM 9 P PA ATP . . . Z 4 173.437 155.292 175.649 1 119.46 ? PA ATP 500 C 1 
HETATM 10 O O1A ATP . . . Z 4 172.953 156.021 176.84 1 116.61 ? O1A ATP 500 C 1 
HETATM 11 O O2A ATP . . . Z 4 174.505 156.029 174.834 1 127.15 ? O2A ATP 500 C 1 
HETATM 12 O O3A ATP . . . Z 4 172.197 154.997 174.674 1 123.78 ? O3A ATP 500 C 1 
HETATM 13 O O5' ATP . . . Z 4 173.994 153.862 176.03 1 126.6 ? O5' ATP 500 C 1 
HETATM 14 C C5' ATP . . . Z 4 174.811 153.665 177.205 1 122.51 ? C5' ATP 500 C 1 
HETATM 15 C C4' ATP . . . Z 4 176.229 153.298 176.828 1 124.91 ? C4' ATP 500 C 1 
HETATM 16 O O4' ATP . . . Z 4 176.705 154.314 175.919 1 123.1 ? O4' ATP 500 C 1 
HETATM 17 C C3' ATP . . . Z 4 177.141 153.392 178.057 1 123.31 ? C3' ATP 500 C 1 
HETATM 18 O O3' ATP . . . Z 4 178.014 152.27 178.009 1 123.82 ? O3' ATP 500 C 1 
HETATM 19 C C2' ATP . . . Z 4 177.993 154.641 177.795 1 124.58 ? C2' ATP 500 C 1 
HETATM 20 O O2' ATP . . . Z 4 179.333 154.324 178.152 1 123.17 ? O2' ATP 500 C 1 
HETATM 21 C C1' ATP . . . Z 4 178.017 154.674 176.276 1 122.84 ? C1' ATP 500 C 1 
HETATM 22 N N9 ATP . . . Z 4 178.229 156.029 175.773 1 126.99 ? N9 ATP 500 C 1 
HETATM 23 C C8 ATP . . . Z 4 177.534 156.63 174.758 1 126.88 ? C8 ATP 500 C 1 
HETATM 24 N N7 ATP . . . Z 4 177.92 157.856 174.497 1 122.66 ? N7 ATP 500 C 1 
HETATM 25 C C5 ATP . . . Z 4 178.939 158.082 175.409 1 120.42 ? C5 ATP 500 C 1 
HETATM 26 C C6 ATP . . . Z 4 179.764 159.197 175.654 1 123.05 ? C6 ATP 500 C 1 
HETATM 27 N N6 ATP . . . Z 4 179.684 160.345 174.971 1 128.09 ? N6 ATP 500 C 1 
HETATM 28 N N1 ATP . . . Z 4 180.683 159.094 176.64 1 123.57 ? N1 ATP 500 C 1 
HETATM 29 C C2 ATP . . . Z 4 180.765 157.949 177.326 1 124.12 ? C2 ATP 500 C 1 
HETATM 30 N N3 ATP . . . Z 4 180.043 156.835 177.183 1 122.99 ? N3 ATP 500 C 1 
HETATM 31 C C4 ATP . . . Z 4 179.143 156.963 176.202 1 123.62 ? C4 ATP 500 C 1 
HETATM 32 H "H5'1" ATP . . . Z 4 174.427 152.962 177.753 1 122.6 ? "H5'1" ATP 500 C 1 
HETATM 33 H "H5'2" ATP . . . Z 4 174.815 154.489 177.717 1 121.18 ? "H5'2" ATP 500 C 1 
HETATM 34 H H4' ATP . . . Z 4 176.265 152.416 176.424 1 123.9 ? H4' ATP 500 C 1 
HETATM 35 H H3' ATP . . . Z 4 176.651 153.454 178.892 1 123.18 ? H3' ATP 500 C 1 
HETATM 36 H HO3' ATP . . . Z 4 178.323 152.222 177.218 1 124.09 ? HO3' ATP 500 C 1 
HETATM 37 H H2' ATP . . . Z 4 177.657 155.447 178.216 1 124.53 ? H2' ATP 500 C 1 
HETATM 38 H HO2' ATP . . . Z 4 179.563 153.631 177.715 1 123.61 ? HO2' ATP 500 C 1 
HETATM 39 H H1' ATP . . . Z 4 178.681 154.062 175.92 1 122.84 ? H1' ATP 500 C 1 
HETATM 40 H H8 ATP . . . Z 4 176.854 156.198 174.295 1 124.19 ? H8 ATP 500 C 1 
HETATM 41 H HN61 ATP . . . Z 4 179.113 160.418 174.333 1 126.32 ? HN61 ATP 500 C 1 
HETATM 42 H HN62 ATP . . . Z 4 180.194 161.01 175.163 1 128.52 ? HN62 ATP 500 C 1 
HETATM 43 H H2 ATP . . . Z 4 181.414 157.925 177.994 1 127.66 ? H2 ATP 500 C 1 
#
_model_server_stats.io_time_ms              130 
_model_server_stats.parse_time_ms           160 
_model_server_stats.create_model_time_ms    135 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           43 
#