data_9C8S
#
_model_server_result.job_id            ffDjIvHUPjVrtp62ZjC36A 
_model_server_result.datetime_utc      '2025-09-12 11:17:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9c8s 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":701}' 
#
_entry.id    9C8S 
#
_exptl.entry_id    9C8S 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              375.274 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "5'-O-[(S)-ethoxy(hydroxy)phosphoryl]adenosine" 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9C8S 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9C8S 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
_chem_comp.formula           'C12 H18 N5 O7 P' 
_chem_comp.formula_weight    375.274 
_chem_comp.id                WTA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "5'-O-[(S)-ethoxy(hydroxy)phosphoryl]adenosine" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O2' C2' WTA sing 374 n n 
N3 C2 WTA doub 375 n y 
N3 C4 WTA sing 376 n y 
C2 N1 WTA sing 377 n y 
C1' C2' WTA sing 378 n n 
C1' O4' WTA sing 379 n n 
C1' N9 WTA sing 380 n n 
C2' C3' WTA sing 381 n n 
O4' C4' WTA sing 382 n n 
C4 N9 WTA sing 383 n y 
C4 C5 WTA doub 384 n y 
N1 C6 WTA doub 385 n y 
N9 C8 WTA sing 386 n y 
C4' C3' WTA sing 387 n n 
C4' C5' WTA sing 388 n n 
C3' O3' WTA sing 389 n n 
C6 C5 WTA sing 390 n y 
C6 N6 WTA sing 391 n n 
C5 N7 WTA sing 392 n y 
O5' C5' WTA sing 393 n n 
O5' P WTA sing 394 n n 
C8 N7 WTA doub 395 n y 
O2P P WTA doub 396 n n 
P O1P WTA sing 397 n n 
P O3P WTA sing 398 n n 
C1P O3P WTA sing 399 n n 
C1P C2P WTA sing 400 n n 
C1' H1 WTA sing 401 n n 
C1P H2 WTA sing 402 n n 
C1P H3 WTA sing 403 n n 
C2 H4 WTA sing 404 n n 
C2' H5 WTA sing 405 n n 
C2P H6 WTA sing 406 n n 
C2P H7 WTA sing 407 n n 
C2P H8 WTA sing 408 n n 
C3' H9 WTA sing 409 n n 
C4' H10 WTA sing 410 n n 
C5' H11 WTA sing 411 n n 
C5' H12 WTA sing 412 n n 
C8 H13 WTA sing 413 n n 
N6 H14 WTA sing 414 n n 
N6 H15 WTA sing 415 n n 
O1P H16 WTA sing 416 n n 
O2' H17 WTA sing 417 n n 
O3' H18 WTA sing 418 n n 
#
_atom_sites.entry_id                     9C8S 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 WTA A 1 701 701 WTA WTA . 
E 2 WTA B 1 701 702 WTA WTA . 
F 2 WTA C 1 701 701 WTA WTA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1' WTA . . . D 2 83.611 99.913 113.8 1 32.09 ? C1' WTA 701 A 1 
HETATM 2 C C1P WTA . . . D 2 86.513 104.562 113.909 1 34.49 ? C1P WTA 701 A 1 
HETATM 3 C C2 WTA . . . D 2 80.821 99.117 110.573 1 35.54 ? C2 WTA 701 A 1 
HETATM 4 C C2' WTA . . . D 2 84.344 98.596 113.553 1 35.92 ? C2' WTA 701 A 1 
HETATM 5 C C2P WTA . . . D 2 86.814 105.115 112.539 1 27.35 ? C2P WTA 701 A 1 
HETATM 6 C C3' WTA . . . D 2 85.796 99.032 113.691 1 40.31 ? C3' WTA 701 A 1 
HETATM 7 C C4 WTA . . . D 2 82.387 100.243 111.618 1 34.01 ? C4 WTA 701 A 1 
HETATM 8 C C4' WTA . . . D 2 85.729 100.073 114.798 1 39.72 ? C4' WTA 701 A 1 
HETATM 9 C C5 WTA . . . D 2 82.448 101.205 110.624 1 34.07 ? C5 WTA 701 A 1 
HETATM 10 C C5' WTA . . . D 2 86.835 101.098 114.801 1 33.09 ? C5' WTA 701 A 1 
HETATM 11 C C6 WTA . . . D 2 81.575 101.026 109.536 1 30.65 ? C6 WTA 701 A 1 
HETATM 12 C C8 WTA . . . D 2 83.864 101.779 112.072 1 32.34 ? C8 WTA 701 A 1 
HETATM 13 N N1 WTA . . . D 2 80.77 99.961 109.548 1 38.91 ? N1 WTA 701 A 1 
HETATM 14 N N3 WTA . . . D 2 81.591 99.177 111.643 1 35.92 ? N3 WTA 701 A 1 
HETATM 15 N N6 WTA . . . D 2 81.514 101.867 108.504 1 27.81 ? N6 WTA 701 A 1 
HETATM 16 N N7 WTA . . . D 2 83.38 102.158 110.929 1 34.42 ? N7 WTA 701 A 1 
HETATM 17 N N9 WTA . . . D 2 83.309 100.625 112.544 1 33.5 ? N9 WTA 701 A 1 
HETATM 18 O O1P WTA . . . D 2 89.004 102.762 116.206 1 43.45 ? O1P WTA 701 A 1 
HETATM 19 O O2' WTA . . . D 2 83.991 97.689 114.586 1 42.59 ? O2' WTA 701 A 1 
HETATM 20 O O2P WTA . . . D 2 87.05 104.303 116.898 1 40.89 ? O2P WTA 701 A 1 
HETATM 21 O O3' WTA . . . D 2 86.683 97.969 113.984 1 45.41 ? O3' WTA 701 A 1 
HETATM 22 O O3P WTA . . . D 2 87.666 103.921 114.431 1 40.09 ? O3P WTA 701 A 1 
HETATM 23 O O4' WTA . . . D 2 84.452 100.73 114.587 1 41.36 ? O4' WTA 701 A 1 
HETATM 24 O O5' WTA . . . D 2 86.632 102.09 115.795 1 38.5 ? O5' WTA 701 A 1 
HETATM 25 P P WTA . . . D 2 87.641 103.313 115.951 1 38.39 ? P WTA 701 A 1 
#
_model_server_stats.io_time_ms              28 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           250 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           25 
#