data_9C9D
#
_model_server_result.job_id            AZxY-g7mC0lmtQwzTI99tQ 
_model_server_result.datetime_utc      '2025-09-01 14:46:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9c9d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":301}' 
#
_entry.id    9C9D 
#
_exptl.entry_id    9C9D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              233.184 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-(6-formyl-4-oxo-3,4-dihydropteridin-2-yl)acetamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          114.6 
_cell.angle_gamma         90 
_cell.entry_id            9C9D 
_cell.length_a            83.292 
_cell.length_b            115.53 
_cell.length_c            92.404 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9C9D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 99 A CYS 98 1_555 A SG CYS 162 A CYS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 A SG CYS 201 A CYS 200 1_555 A SG CYS 257 A CYS 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf3 B SG CYS 26 B CYS 25 1_555 B SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 C SG CYS 23 D CYS 22 1_555 C SG CYS 89 D CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf5 C SG CYS 133 D CYS 132 1_555 C SG CYS 183 D CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf6 C SG CYS 158 D CYS 157 1_555 D SG CYS 173 E CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf7 D SG CYS 24 E CYS 23 1_555 D SG CYS 92 E CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf8 D SG CYS 147 E CYS 146 1_555 D SG CYS 212 E CYS 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf9 E SG CYS 29 F CYS 26 1_555 E SG CYS 78 F CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf10 E SG CYS 124 F CYS 121 1_555 E SG CYS 176 F CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf11 E SG CYS 136 F CYS 133 1_555 E SG CYS 146 F CYS 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
covale ? covale1 A NZ LYS 44 A LYS 43 1_555 F C9 30W . A 30W 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? 
#
_chem_comp.formula           'C9 H7 N5 O3' 
_chem_comp.formula_weight    233.184 
_chem_comp.id                30W 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-(6-formyl-4-oxo-3,4-dihydropteridin-2-yl)acetamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'Acetyl 6-formylpterin' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C9 C6 30W sing 1 n n 
C6 C7 30W doub 2 n y 
C6 N5 30W sing 3 n y 
C7 N8 30W sing 4 n y 
N5 C4A 30W doub 5 n y 
N8 C8A 30W doub 6 n y 
C4A C8A 30W sing 7 n y 
C4A C4 30W sing 8 n n 
C8A N1 30W sing 9 n n 
O4 C4 30W doub 10 n n 
C4 N3 30W sing 11 n n 
N1 C2 30W doub 12 n n 
N3 C2 30W sing 13 n n 
C2 N2 30W sing 14 n n 
O10 C10 30W doub 15 n n 
N2 C10 30W sing 16 n n 
C10 C11 30W sing 17 n n 
C11 H1 30W sing 18 n n 
C11 H2 30W sing 19 n n 
C11 H3 30W sing 20 n n 
C7 H4 30W sing 21 n n 
C9 H5 30W sing 22 n n 
N2 H8 30W sing 23 n n 
N3 H9 30W sing 24 n n 
C9 O9 30W doub 25 n n 
#
_atom_sites.entry_id                     9C9D 
_atom_sites.fract_transf_matrix[1][1]    0.012006 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005497 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008656 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011902 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 6 30W A 1 301 301 30W 30W . 
G 7 GOL A 1 302 302 GOL GOL . 
H 8 SO4 A 1 303 303 SO4 SO4 . 
I 8 SO4 A 1 304 304 SO4 SO4 . 
J 7 GOL A 1 305 305 GOL GOL . 
K 7 GOL B 1 101 101 GOL GOL . 
L 9 MES B 1 102 102 MES MES . 
M 8 SO4 D 1 301 301 SO4 SO4 . 
N 8 SO4 D 1 302 302 SO4 SO4 . 
O 8 SO4 D 1 303 303 SO4 SO4 . 
P 10 CL E 1 301 301 CL CL . 
Q 8 SO4 E 1 302 302 SO4 SO4 . 
R 8 SO4 E 1 303 303 SO4 SO4 . 
S 8 SO4 F 1 301 301 SO4 SO4 . 
T 11 HOH A 1 401 401 HOH HOH . 
T 11 HOH A 2 402 402 HOH HOH . 
T 11 HOH A 3 403 403 HOH HOH . 
T 11 HOH A 4 404 404 HOH HOH . 
T 11 HOH A 5 405 405 HOH HOH . 
T 11 HOH A 6 406 406 HOH HOH . 
T 11 HOH A 7 407 407 HOH HOH . 
T 11 HOH A 8 408 408 HOH HOH . 
T 11 HOH A 9 409 409 HOH HOH . 
T 11 HOH A 10 410 410 HOH HOH . 
T 11 HOH A 11 411 411 HOH HOH . 
T 11 HOH A 12 412 412 HOH HOH . 
T 11 HOH A 13 413 413 HOH HOH . 
T 11 HOH A 14 414 414 HOH HOH . 
T 11 HOH A 15 415 415 HOH HOH . 
T 11 HOH A 16 416 416 HOH HOH . 
T 11 HOH A 17 417 417 HOH HOH . 
T 11 HOH A 18 418 418 HOH HOH . 
T 11 HOH A 19 419 419 HOH HOH . 
T 11 HOH A 20 420 420 HOH HOH . 
T 11 HOH A 21 421 421 HOH HOH . 
T 11 HOH A 22 422 422 HOH HOH . 
T 11 HOH A 23 423 423 HOH HOH . 
T 11 HOH A 24 424 424 HOH HOH . 
T 11 HOH A 25 425 425 HOH HOH . 
T 11 HOH A 26 426 426 HOH HOH . 
T 11 HOH A 27 427 427 HOH HOH . 
T 11 HOH A 28 428 428 HOH HOH . 
T 11 HOH A 29 429 429 HOH HOH . 
T 11 HOH A 30 430 430 HOH HOH . 
T 11 HOH A 31 431 431 HOH HOH . 
T 11 HOH A 32 432 432 HOH HOH . 
T 11 HOH A 33 433 433 HOH HOH . 
T 11 HOH A 34 434 434 HOH HOH . 
T 11 HOH A 35 435 435 HOH HOH . 
T 11 HOH A 36 436 436 HOH HOH . 
T 11 HOH A 37 437 437 HOH HOH . 
T 11 HOH A 38 438 438 HOH HOH . 
T 11 HOH A 39 439 439 HOH HOH . 
T 11 HOH A 40 440 440 HOH HOH . 
T 11 HOH A 41 441 441 HOH HOH . 
T 11 HOH A 42 442 442 HOH HOH . 
T 11 HOH A 43 443 443 HOH HOH . 
T 11 HOH A 44 444 444 HOH HOH . 
T 11 HOH A 45 445 445 HOH HOH . 
T 11 HOH A 46 446 446 HOH HOH . 
T 11 HOH A 47 447 447 HOH HOH . 
T 11 HOH A 48 448 448 HOH HOH . 
T 11 HOH A 49 449 449 HOH HOH . 
T 11 HOH A 50 450 450 HOH HOH . 
T 11 HOH A 51 451 451 HOH HOH . 
T 11 HOH A 52 452 452 HOH HOH . 
T 11 HOH A 53 453 453 HOH HOH . 
T 11 HOH A 54 454 454 HOH HOH . 
T 11 HOH A 55 455 455 HOH HOH . 
T 11 HOH A 56 456 456 HOH HOH . 
T 11 HOH A 57 457 457 HOH HOH . 
T 11 HOH A 58 458 458 HOH HOH . 
T 11 HOH A 59 459 459 HOH HOH . 
T 11 HOH A 60 460 460 HOH HOH . 
T 11 HOH A 61 461 461 HOH HOH . 
T 11 HOH A 62 462 462 HOH HOH . 
U 11 HOH B 1 201 201 HOH HOH . 
U 11 HOH B 2 202 202 HOH HOH . 
U 11 HOH B 3 203 203 HOH HOH . 
U 11 HOH B 4 204 204 HOH HOH . 
U 11 HOH B 5 205 205 HOH HOH . 
U 11 HOH B 6 206 206 HOH HOH . 
U 11 HOH B 7 207 207 HOH HOH . 
U 11 HOH B 8 208 208 HOH HOH . 
U 11 HOH B 9 209 209 HOH HOH . 
U 11 HOH B 10 210 210 HOH HOH . 
U 11 HOH B 11 211 211 HOH HOH . 
U 11 HOH B 12 212 212 HOH HOH . 
U 11 HOH B 13 213 213 HOH HOH . 
U 11 HOH B 14 214 214 HOH HOH . 
U 11 HOH B 15 215 215 HOH HOH . 
V 11 HOH D 1 401 401 HOH HOH . 
V 11 HOH D 2 402 402 HOH HOH . 
V 11 HOH D 3 403 403 HOH HOH . 
V 11 HOH D 4 404 404 HOH HOH . 
V 11 HOH D 5 405 405 HOH HOH . 
V 11 HOH D 6 406 406 HOH HOH . 
V 11 HOH D 7 407 407 HOH HOH . 
V 11 HOH D 8 408 408 HOH HOH . 
V 11 HOH D 9 409 409 HOH HOH . 
V 11 HOH D 10 410 410 HOH HOH . 
V 11 HOH D 11 411 411 HOH HOH . 
V 11 HOH D 12 412 412 HOH HOH . 
V 11 HOH D 13 413 413 HOH HOH . 
V 11 HOH D 14 414 414 HOH HOH . 
V 11 HOH D 15 415 415 HOH HOH . 
V 11 HOH D 16 416 416 HOH HOH . 
V 11 HOH D 17 417 417 HOH HOH . 
V 11 HOH D 18 418 418 HOH HOH . 
V 11 HOH D 19 419 419 HOH HOH . 
V 11 HOH D 20 420 420 HOH HOH . 
V 11 HOH D 21 421 421 HOH HOH . 
V 11 HOH D 22 422 422 HOH HOH . 
V 11 HOH D 23 423 423 HOH HOH . 
V 11 HOH D 24 424 424 HOH HOH . 
V 11 HOH D 25 425 425 HOH HOH . 
V 11 HOH D 26 426 426 HOH HOH . 
V 11 HOH D 27 427 427 HOH HOH . 
V 11 HOH D 28 428 428 HOH HOH . 
V 11 HOH D 29 429 429 HOH HOH . 
V 11 HOH D 30 430 430 HOH HOH . 
V 11 HOH D 31 431 431 HOH HOH . 
V 11 HOH D 32 432 432 HOH HOH . 
V 11 HOH D 33 433 433 HOH HOH . 
W 11 HOH E 1 401 401 HOH HOH . 
W 11 HOH E 2 402 402 HOH HOH . 
W 11 HOH E 3 403 403 HOH HOH . 
W 11 HOH E 4 404 404 HOH HOH . 
W 11 HOH E 5 405 405 HOH HOH . 
W 11 HOH E 6 406 406 HOH HOH . 
W 11 HOH E 7 407 407 HOH HOH . 
W 11 HOH E 8 408 408 HOH HOH . 
W 11 HOH E 9 409 409 HOH HOH . 
W 11 HOH E 10 410 410 HOH HOH . 
W 11 HOH E 11 411 411 HOH HOH . 
W 11 HOH E 12 412 412 HOH HOH . 
W 11 HOH E 13 413 413 HOH HOH . 
W 11 HOH E 14 414 414 HOH HOH . 
W 11 HOH E 15 415 415 HOH HOH . 
W 11 HOH E 16 416 416 HOH HOH . 
W 11 HOH E 17 417 417 HOH HOH . 
W 11 HOH E 18 418 418 HOH HOH . 
W 11 HOH E 19 419 419 HOH HOH . 
W 11 HOH E 20 420 420 HOH HOH . 
W 11 HOH E 21 421 421 HOH HOH . 
W 11 HOH E 22 422 422 HOH HOH . 
W 11 HOH E 23 423 423 HOH HOH . 
W 11 HOH E 24 424 424 HOH HOH . 
X 11 HOH F 1 401 401 HOH HOH . 
X 11 HOH F 2 402 402 HOH HOH . 
X 11 HOH F 3 403 403 HOH HOH . 
X 11 HOH F 4 404 404 HOH HOH . 
X 11 HOH F 5 405 405 HOH HOH . 
X 11 HOH F 6 406 406 HOH HOH . 
X 11 HOH F 7 407 407 HOH HOH . 
X 11 HOH F 8 408 408 HOH HOH . 
X 11 HOH F 9 409 409 HOH HOH . 
X 11 HOH F 10 410 410 HOH HOH . 
X 11 HOH F 11 411 411 HOH HOH . 
X 11 HOH F 12 412 412 HOH HOH . 
X 11 HOH F 13 413 413 HOH HOH . 
X 11 HOH F 14 414 414 HOH HOH . 
X 11 HOH F 15 415 415 HOH HOH . 
X 11 HOH F 16 416 416 HOH HOH . 
X 11 HOH F 17 417 417 HOH HOH . 
X 11 HOH F 18 418 418 HOH HOH . 
X 11 HOH F 19 419 419 HOH HOH . 
X 11 HOH F 20 420 420 HOH HOH . 
X 11 HOH F 21 421 421 HOH HOH . 
X 11 HOH F 22 422 422 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 30W . . . F 6 -27.953 33.494 22.92 1 49.7 ? C4 30W 301 A 1 
HETATM 2 C C6 30W . . . F 6 -30.222 31.469 24.931 1 47.88 ? C6 30W 301 A 1 
HETATM 3 C C11 30W . . . F 6 -25.775 38.709 23.808 1 46.47 ? C11 30W 301 A 1 
HETATM 4 C C7 30W . . . F 6 -30.403 32.282 26.051 1 49.32 ? C7 30W 301 A 1 
HETATM 5 C C9 30W . . . F 6 -30.88 30.153 24.762 1 51.7 ? C9 30W 301 A 1 
HETATM 6 C C10 30W . . . F 6 -26.265 37.345 23.423 1 48.64 ? C10 30W 301 A 1 
HETATM 7 N N1 30W . . . F 6 -28.398 35.089 25.255 1 49.42 ? N1 30W 301 A 1 
HETATM 8 N N2 30W . . . F 6 -27.056 36.719 24.342 1 48.25 ? N2 30W 301 A 1 
HETATM 9 N N3 30W . . . F 6 -27.406 34.733 23.139 1 49.09 ? N3 30W 301 A 1 
HETATM 10 O O10 30W . . . F 6 -25.977 36.823 22.349 1 57.07 ? O10 30W 301 A 1 
HETATM 11 C C2 30W . . . F 6 -27.634 35.477 24.257 1 48.97 ? C2 30W 301 A 1 
HETATM 12 C C8A 30W . . . F 6 -29.031 33.861 25.195 1 49.46 ? C8A 30W 301 A 1 
HETATM 13 N N8 30W . . . F 6 -29.823 33.479 26.213 1 53.05 ? N8 30W 301 A 1 
HETATM 14 N N5 30W . . . F 6 -29.426 31.853 23.919 1 49.31 ? N5 30W 301 A 1 
HETATM 15 C C4A 30W . . . F 6 -28.821 33.043 24.026 1 49.35 ? C4A 30W 301 A 1 
HETATM 16 O O4 30W . . . F 6 -27.714 32.863 21.894 1 48.06 ? O4 30W 301 A 1 
#
_model_server_stats.io_time_ms              191 
_model_server_stats.parse_time_ms           91 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           16 
#