data_9CBF # _model_server_result.job_id llKwznV_k86NME-kxkLjoA _model_server_result.datetime_utc '2024-11-08 06:48:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9cbf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":704}' # _entry.id 9CBF # _exptl.entry_id 9CBF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 181.255 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[3-(aminomethyl)phenyl]-2-sulfanylethan-1-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9CBF _cell.length_a 80.411 _cell.length_b 80.411 _cell.length_c 236.953 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9CBF _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 172 A ASP 172 1_555 H K K . A K 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.825 ? metalc ? metalc2 A OD1 ASP 172 A ASP 172 1_555 H K K . A K 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.884 ? metalc ? metalc3 A O ASP 174 A ASP 174 1_555 H K K . A K 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? metalc ? metalc4 A OD1 ASP 174 A ASP 174 1_555 J ZN ZN . A ZN 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? metalc ? metalc5 A OD2 ASP 174 A ASP 174 1_555 J ZN ZN . A ZN 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? metalc ? metalc6 A O HIS 176 A HIS 176 1_555 H K K . A K 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? metalc ? metalc7 A ND1 HIS 176 A HIS 176 1_555 J ZN ZN . A ZN 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc8 A O PHE 185 A PHE 185 1_555 I K K . A K 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? metalc ? metalc9 A O ASP 188 A ASP 188 1_555 I K K . A K 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? metalc ? metalc10 A O VAL 191 A VAL 191 1_555 I K K . A K 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? metalc ? metalc11 A OG SER 195 A SER 195 1_555 H K K . A K 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? metalc ? metalc12 A O TRP 196 A TRP 196 1_555 H K K . A K 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? metalc ? metalc13 A O PHE 224 A PHE 224 1_555 I K K . A K 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.715 ? metalc ? metalc14 A OD2 ASP 267 A ASP 267 1_555 J ZN ZN . A ZN 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc15 E S10 A1AVR . A A1AVR 704 1_555 J ZN ZN . A ZN 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc16 I K K . A K 708 1_555 K O HOH . A HOH 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.82 ? metalc ? metalc17 I K K . A K 708 1_555 K O HOH . A HOH 813 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.047 ? # _chem_comp.formula 'C9 H11 N O S' _chem_comp.formula_weight 181.255 _chem_comp.id A1AVR _chem_comp.mon_nstd_flag . _chem_comp.name 1-[3-(aminomethyl)phenyl]-2-sulfanylethan-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C02 N01 A1AVR sing 1 n n C03 C02 A1AVR sing 2 n n C04 C03 A1AVR doub 3 n y C05 C04 A1AVR sing 4 n y C06 C05 A1AVR doub 5 n y C07 C06 A1AVR sing 6 n y S10 C09 A1AVR sing 7 n n C09 C08 A1AVR sing 8 n n O11 C08 A1AVR doub 9 n n C08 C07 A1AVR sing 10 n n C12 C07 A1AVR doub 11 n y C03 C12 A1AVR sing 12 n y C02 H022 A1AVR sing 13 n n C02 H021 A1AVR sing 14 n n C04 H041 A1AVR sing 15 n n C05 H051 A1AVR sing 16 n n C06 H061 A1AVR sing 17 n n C09 H091 A1AVR sing 18 n n C09 H092 A1AVR sing 19 n n C12 H121 A1AVR sing 20 n n N01 H012 A1AVR sing 21 n n N01 H011 A1AVR sing 22 n n S10 H101 A1AVR sing 23 n n # _atom_sites.entry_id 9CBF _atom_sites.fract_transf_matrix[1][1] 0.012436 _atom_sites.fract_transf_matrix[1][2] 0.00718 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01436 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00422 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 701 701 EDO EDO . C 2 EDO A 1 702 702 EDO EDO . D 2 EDO A 1 703 703 EDO EDO . E 3 A1AVR A 1 704 704 A1AVR M1T . F 4 PO4 A 1 705 1 PO4 PO4 . G 4 PO4 A 1 706 2 PO4 PO4 . H 5 K A 1 707 1 K K . I 5 K A 1 708 2 K K . J 6 ZN A 1 709 1 ZN ZN . K 7 HOH A 1 801 18 HOH HOH . K 7 HOH A 2 802 4 HOH HOH . K 7 HOH A 3 803 2 HOH HOH . K 7 HOH A 4 804 12 HOH HOH . K 7 HOH A 5 805 10 HOH HOH . K 7 HOH A 6 806 9 HOH HOH . K 7 HOH A 7 807 8 HOH HOH . K 7 HOH A 8 808 11 HOH HOH . K 7 HOH A 9 809 1 HOH HOH . K 7 HOH A 10 810 13 HOH HOH . K 7 HOH A 11 811 7 HOH HOH . K 7 HOH A 12 812 6 HOH HOH . K 7 HOH A 13 813 5 HOH HOH . K 7 HOH A 14 814 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 A1AVR . . . E 3 47.423 -4.603 -7.671 1 66.11 ? C02 A1AVR 704 A 1 HETATM 2 C C03 A1AVR . . . E 3 46.587 -3.658 -6.875 1 65.13 ? C03 A1AVR 704 A 1 HETATM 3 C C04 A1AVR . . . E 3 46.32 -3.944 -5.536 1 64.47 ? C04 A1AVR 704 A 1 HETATM 4 C C05 A1AVR . . . E 3 45.527 -3.057 -4.767 1 63.89 ? C05 A1AVR 704 A 1 HETATM 5 C C06 A1AVR . . . E 3 45.009 -1.883 -5.358 1 63.27 ? C06 A1AVR 704 A 1 HETATM 6 C C07 A1AVR . . . E 3 45.27 -1.606 -6.658 1 62.41 ? C07 A1AVR 704 A 1 HETATM 7 C C08 A1AVR . . . E 3 44.685 -0.303 -7.281 1 64.14 ? C08 A1AVR 704 A 1 HETATM 8 C C09 A1AVR . . . E 3 43.861 0.576 -6.439 1 63.74 ? C09 A1AVR 704 A 1 HETATM 9 C C12 A1AVR . . . E 3 46.088 -2.523 -7.452 1 64.76 ? C12 A1AVR 704 A 1 HETATM 10 N N01 A1AVR . . . E 3 46.6 -5.447 -8.453 1 69.22 ? N01 A1AVR 704 A 1 HETATM 11 O O11 A1AVR . . . E 3 44.9 -0.025 -8.406 1 65.1 ? O11 A1AVR 704 A 1 HETATM 12 S S10 A1AVR . . . E 3 43.284 2.067 -7.382 1 64.95 ? S10 A1AVR 704 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #