data_9CBG # _model_server_result.job_id --s7KYZ5LQu41pbE5R00FA _model_server_result.datetime_utc '2024-11-08 07:01:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9cbg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":702}' # _entry.id 9CBG # _exptl.entry_id 9CBG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 195.281 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[3-(2-aminoethyl)phenyl]-2-sulfanylethan-1-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9CBG _cell.length_a 81.072 _cell.length_b 81.072 _cell.length_c 240.318 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9CBG _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 172 A ASP 172 1_555 G K K . A K 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.854 ? metalc ? metalc2 A OD1 ASP 172 A ASP 172 1_555 G K K . A K 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.036 ? metalc ? metalc3 A OD2 ASP 172 A ASP 172 1_555 G K K . A K 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.459 ? metalc ? metalc4 A OD1 ASP 174 A ASP 174 1_555 F ZN ZN . A ZN 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc5 A OD2 ASP 174 A ASP 174 1_555 F ZN ZN . A ZN 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.61 ? metalc ? metalc6 A O ASP 174 A ASP 174 1_555 G K K . A K 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc7 A ND1 HIS 176 A HIS 176 1_555 F ZN ZN . A ZN 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc8 A O HIS 176 A HIS 176 1_555 G K K . A K 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.643 ? metalc ? metalc9 A O PHE 185 A PHE 185 1_555 H K K . A K 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc10 A O ASP 188 A ASP 188 1_555 H K K . A K 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.175 ? metalc ? metalc11 A O VAL 191 A VAL 191 1_555 H K K . A K 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? metalc ? metalc12 A OG SER 195 A SER 195 1_555 G K K . A K 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.806 ? metalc ? metalc13 A O TRP 196 A TRP 196 1_555 G K K . A K 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? metalc ? metalc14 A O PHE 224 A PHE 224 1_555 H K K . A K 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.919 ? metalc ? metalc15 A OD2 ASP 267 A ASP 267 1_555 F ZN ZN . A ZN 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc16 C S04 A1AVN . A A1AVN 702 1_555 F ZN ZN . A ZN 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc17 H K K . A K 707 1_555 I O HOH . A HOH 809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.887 ? metalc ? metalc18 H K K . A K 707 1_555 I O HOH . A HOH 827 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.892 ? # _chem_comp.formula 'C10 H13 N O S' _chem_comp.formula_weight 195.281 _chem_comp.id A1AVN _chem_comp.mon_nstd_flag . _chem_comp.name 1-[3-(2-aminoethyl)phenyl]-2-sulfanylethan-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C02 O01 A1AVN doub 1 n n S04 C03 A1AVN sing 2 n n C03 C02 A1AVN sing 3 n n C05 C02 A1AVN sing 4 n n C06 C05 A1AVN doub 5 n y C07 C06 A1AVN sing 6 n y C09 C08 A1AVN sing 7 n n N10 C09 A1AVN sing 8 n n C08 C07 A1AVN sing 9 n n C11 C07 A1AVN doub 10 n y C12 C11 A1AVN sing 11 n y C13 C12 A1AVN doub 12 n y C05 C13 A1AVN sing 13 n y C03 H031 A1AVN sing 14 n n C03 H032 A1AVN sing 15 n n C06 H061 A1AVN sing 16 n n C08 H082 A1AVN sing 17 n n C08 H081 A1AVN sing 18 n n C09 H092 A1AVN sing 19 n n C09 H091 A1AVN sing 20 n n C11 H111 A1AVN sing 21 n n C12 H121 A1AVN sing 22 n n C13 H131 A1AVN sing 23 n n N10 H102 A1AVN sing 24 n n N10 H1 A1AVN sing 25 n n S04 H041 A1AVN sing 26 n n # _atom_sites.entry_id 9CBG _atom_sites.fract_transf_matrix[1][1] 0.012335 _atom_sites.fract_transf_matrix[1][2] 0.007121 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014243 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004161 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 701 701 EDO EDO . C 3 A1AVN A 1 702 702 A1AVN M2T . D 4 PO4 A 1 703 1 PO4 PO4 . E 4 PO4 A 1 704 2 PO4 PO4 . F 5 ZN A 1 705 1 ZN ZN . G 6 K A 1 706 1 K K . H 6 K A 1 707 2 K K . I 7 HOH A 1 801 28 HOH HOH . I 7 HOH A 2 802 1 HOH HOH . I 7 HOH A 3 803 13 HOH HOH . I 7 HOH A 4 804 30 HOH HOH . I 7 HOH A 5 805 22 HOH HOH . I 7 HOH A 6 806 20 HOH HOH . I 7 HOH A 7 807 16 HOH HOH . I 7 HOH A 8 808 7 HOH HOH . I 7 HOH A 9 809 23 HOH HOH . I 7 HOH A 10 810 8 HOH HOH . I 7 HOH A 11 811 36 HOH HOH . I 7 HOH A 12 812 29 HOH HOH . I 7 HOH A 13 813 11 HOH HOH . I 7 HOH A 14 814 19 HOH HOH . I 7 HOH A 15 815 10 HOH HOH . I 7 HOH A 16 816 35 HOH HOH . I 7 HOH A 17 817 25 HOH HOH . I 7 HOH A 18 818 14 HOH HOH . I 7 HOH A 19 819 9 HOH HOH . I 7 HOH A 20 820 15 HOH HOH . I 7 HOH A 21 821 39 HOH HOH . I 7 HOH A 22 822 38 HOH HOH . I 7 HOH A 23 823 31 HOH HOH . I 7 HOH A 24 824 17 HOH HOH . I 7 HOH A 25 825 32 HOH HOH . I 7 HOH A 26 826 26 HOH HOH . I 7 HOH A 27 827 24 HOH HOH . I 7 HOH A 28 828 18 HOH HOH . I 7 HOH A 29 829 6 HOH HOH . I 7 HOH A 30 830 37 HOH HOH . I 7 HOH A 31 831 27 HOH HOH . I 7 HOH A 32 832 21 HOH HOH . I 7 HOH A 33 833 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 A1AVN . . . C 3 45.28 -0.022 -7.331 1 74.46 ? C02 A1AVN 702 A 1 HETATM 2 C C03 A1AVN . . . C 3 44.805 1.128 -6.44 1 75.94 ? C03 A1AVN 702 A 1 HETATM 3 C C05 A1AVN . . . C 3 45.776 -1.312 -6.669 1 65.53 ? C05 A1AVN 702 A 1 HETATM 4 C C06 A1AVN . . . C 3 46.197 -2.394 -7.43 1 72.71 ? C06 A1AVN 702 A 1 HETATM 5 C C07 A1AVN . . . C 3 46.642 -3.549 -6.796 1 83.59 ? C07 A1AVN 702 A 1 HETATM 6 C C08 A1AVN . . . C 3 47.095 -4.752 -7.622 1 87.15 ? C08 A1AVN 702 A 1 HETATM 7 C C09 A1AVN . . . C 3 48.555 -4.681 -8.058 1 84.19 ? C09 A1AVN 702 A 1 HETATM 8 C C11 A1AVN . . . C 3 46.664 -3.628 -5.412 1 74.89 ? C11 A1AVN 702 A 1 HETATM 9 C C12 A1AVN . . . C 3 46.245 -2.546 -4.658 1 71.25 ? C12 A1AVN 702 A 1 HETATM 10 C C13 A1AVN . . . C 3 45.803 -1.391 -5.285 1 68.54 ? C13 A1AVN 702 A 1 HETATM 11 N N10 A1AVN . . . C 3 48.763 -5.552 -9.203 1 100.01 ? N10 A1AVN 702 A 1 HETATM 12 O O01 A1AVN . . . C 3 45.263 0.092 -8.513 1 72.4 ? O01 A1AVN 702 A 1 HETATM 13 S S04 A1AVN . . . C 3 43.326 1.931 -7.131 1 67.5 ? S04 A1AVN 702 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 13 #