data_9CBG # _model_server_result.job_id snihsPeDyuY8HYVo1Gfg-Q _model_server_result.datetime_utc '2024-11-27 19:03:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9cbg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":703}' # _entry.id 9CBG # _exptl.entry_id 9CBG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9CBG _cell.length_a 81.072 _cell.length_b 81.072 _cell.length_c 240.318 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9CBG _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 172 A ASP 172 1_555 G K K . A K 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.854 ? metalc ? metalc2 A OD1 ASP 172 A ASP 172 1_555 G K K . A K 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.036 ? metalc ? metalc3 A OD2 ASP 172 A ASP 172 1_555 G K K . A K 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.459 ? metalc ? metalc4 A OD1 ASP 174 A ASP 174 1_555 F ZN ZN . A ZN 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc5 A OD2 ASP 174 A ASP 174 1_555 F ZN ZN . A ZN 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.61 ? metalc ? metalc6 A O ASP 174 A ASP 174 1_555 G K K . A K 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc7 A ND1 HIS 176 A HIS 176 1_555 F ZN ZN . A ZN 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc8 A O HIS 176 A HIS 176 1_555 G K K . A K 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.643 ? metalc ? metalc9 A O PHE 185 A PHE 185 1_555 H K K . A K 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc10 A O ASP 188 A ASP 188 1_555 H K K . A K 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.175 ? metalc ? metalc11 A O VAL 191 A VAL 191 1_555 H K K . A K 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? metalc ? metalc12 A OG SER 195 A SER 195 1_555 G K K . A K 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.806 ? metalc ? metalc13 A O TRP 196 A TRP 196 1_555 G K K . A K 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? metalc ? metalc14 A O PHE 224 A PHE 224 1_555 H K K . A K 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.919 ? metalc ? metalc15 A OD2 ASP 267 A ASP 267 1_555 F ZN ZN . A ZN 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc16 C S04 A1AVN . A A1AVN 702 1_555 F ZN ZN . A ZN 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc17 H K K . A K 707 1_555 I O HOH . A HOH 809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.887 ? metalc ? metalc18 H K K . A K 707 1_555 I O HOH . A HOH 827 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.892 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 295 n n P O2 PO4 sing 296 n n P O3 PO4 sing 297 n n P O4 PO4 sing 298 n n # _atom_sites.entry_id 9CBG _atom_sites.fract_transf_matrix[1][1] 0.012335 _atom_sites.fract_transf_matrix[1][2] 0.007121 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014243 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004161 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 701 701 EDO EDO . C 3 A1AVN A 1 702 702 A1AVN M2T . D 4 PO4 A 1 703 1 PO4 PO4 . E 4 PO4 A 1 704 2 PO4 PO4 . F 5 ZN A 1 705 1 ZN ZN . G 6 K A 1 706 1 K K . H 6 K A 1 707 2 K K . I 7 HOH A 1 801 28 HOH HOH . I 7 HOH A 2 802 1 HOH HOH . I 7 HOH A 3 803 13 HOH HOH . I 7 HOH A 4 804 30 HOH HOH . I 7 HOH A 5 805 22 HOH HOH . I 7 HOH A 6 806 20 HOH HOH . I 7 HOH A 7 807 16 HOH HOH . I 7 HOH A 8 808 7 HOH HOH . I 7 HOH A 9 809 23 HOH HOH . I 7 HOH A 10 810 8 HOH HOH . I 7 HOH A 11 811 36 HOH HOH . I 7 HOH A 12 812 29 HOH HOH . I 7 HOH A 13 813 11 HOH HOH . I 7 HOH A 14 814 19 HOH HOH . I 7 HOH A 15 815 10 HOH HOH . I 7 HOH A 16 816 35 HOH HOH . I 7 HOH A 17 817 25 HOH HOH . I 7 HOH A 18 818 14 HOH HOH . I 7 HOH A 19 819 9 HOH HOH . I 7 HOH A 20 820 15 HOH HOH . I 7 HOH A 21 821 39 HOH HOH . I 7 HOH A 22 822 38 HOH HOH . I 7 HOH A 23 823 31 HOH HOH . I 7 HOH A 24 824 17 HOH HOH . I 7 HOH A 25 825 32 HOH HOH . I 7 HOH A 26 826 26 HOH HOH . I 7 HOH A 27 827 24 HOH HOH . I 7 HOH A 28 828 18 HOH HOH . I 7 HOH A 29 829 6 HOH HOH . I 7 HOH A 30 830 37 HOH HOH . I 7 HOH A 31 831 27 HOH HOH . I 7 HOH A 32 832 21 HOH HOH . I 7 HOH A 33 833 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . D 4 55.351 18.604 8.827 1 62.43 ? P PO4 703 A 1 HETATM 2 O O1 PO4 . . . D 4 56.503 19.661 8.916 1 78.7 ? O1 PO4 703 A 1 HETATM 3 O O2 PO4 . . . D 4 53.96 19.303 9.039 1 58.33 ? O2 PO4 703 A 1 HETATM 4 O O3 PO4 . . . D 4 55.387 17.918 7.415 1 64.97 ? O3 PO4 703 A 1 HETATM 5 O O4 PO4 . . . D 4 55.554 17.531 9.952 1 73.95 ? O4 PO4 703 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #