data_9CBI # _model_server_result.job_id v2-F6aKWGgAleaTFJiWzCg _model_server_result.datetime_utc '2024-11-08 05:38:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9cbi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 9CBI # _exptl.entry_id 9CBI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9CBI _cell.length_a 80.728 _cell.length_b 80.728 _cell.length_c 240.44 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9CBI _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 172 A ASP 172 1_555 J K K . A K 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.803 ? metalc ? metalc2 A OD1 ASP 172 A ASP 172 1_555 J K K . A K 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.868 ? metalc ? metalc3 A O ASP 174 A ASP 174 1_555 J K K . A K 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc4 A OD1 ASP 174 A ASP 174 1_555 K ZN ZN . A ZN 710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc5 A O HIS 176 A HIS 176 1_555 J K K . A K 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.671 ? metalc ? metalc6 A ND1 HIS 176 A HIS 176 1_555 K ZN ZN . A ZN 710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc7 A O PHE 185 A PHE 185 1_555 I K K . A K 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc8 A O ASP 188 A ASP 188 1_555 I K K . A K 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.978 ? metalc ? metalc9 A O VAL 191 A VAL 191 1_555 I K K . A K 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc10 A OG SER 195 A SER 195 1_555 J K K . A K 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.951 ? metalc ? metalc11 A O TRP 196 A TRP 196 1_555 J K K . A K 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? metalc ? metalc12 A O PHE 224 A PHE 224 1_555 I K K . A K 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.768 ? metalc ? metalc13 A OD2 ASP 267 A ASP 267 1_555 K ZN ZN . A ZN 710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? metalc ? metalc14 C S01 A1AVQ . A A1AVQ 702 1_555 K ZN ZN . A ZN 710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc15 I K K . A K 708 1_555 L O HOH . A HOH 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.806 ? metalc ? metalc16 I K K . A K 708 1_555 L O HOH . A HOH 824 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.819 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 109 n n C1 C2 EDO sing 110 n n C1 H11 EDO sing 111 n n C1 H12 EDO sing 112 n n O1 HO1 EDO sing 113 n n C2 O2 EDO sing 114 n n C2 H21 EDO sing 115 n n C2 H22 EDO sing 116 n n O2 HO2 EDO sing 117 n n # _atom_sites.entry_id 9CBI _atom_sites.fract_transf_matrix[1][1] 0.012387 _atom_sites.fract_transf_matrix[1][2] 0.007152 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014304 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004159 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 701 701 EDO EDO . C 3 A1AVQ A 1 702 702 A1AVQ P2T . D 2 EDO A 1 703 703 EDO EDO . E 2 EDO A 1 704 704 EDO EDO . F 2 EDO A 1 705 705 EDO EDO . G 4 PO4 A 1 706 2 PO4 PO4 . H 4 PO4 A 1 707 3 PO4 PO4 . I 5 K A 1 708 2 K K . J 5 K A 1 709 3 K K . K 6 ZN A 1 710 1 ZN ZN . L 7 HOH A 1 801 8 HOH HOH . L 7 HOH A 2 802 32 HOH HOH . L 7 HOH A 3 803 17 HOH HOH . L 7 HOH A 4 804 22 HOH HOH . L 7 HOH A 5 805 30 HOH HOH . L 7 HOH A 6 806 3 HOH HOH . L 7 HOH A 7 807 10 HOH HOH . L 7 HOH A 8 808 21 HOH HOH . L 7 HOH A 9 809 34 HOH HOH . L 7 HOH A 10 810 2 HOH HOH . L 7 HOH A 11 811 31 HOH HOH . L 7 HOH A 12 812 9 HOH HOH . L 7 HOH A 13 813 20 HOH HOH . L 7 HOH A 14 814 28 HOH HOH . L 7 HOH A 15 815 13 HOH HOH . L 7 HOH A 16 816 5 HOH HOH . L 7 HOH A 17 817 12 HOH HOH . L 7 HOH A 18 818 6 HOH HOH . L 7 HOH A 19 819 27 HOH HOH . L 7 HOH A 20 820 16 HOH HOH . L 7 HOH A 21 821 18 HOH HOH . L 7 HOH A 22 822 14 HOH HOH . L 7 HOH A 23 823 19 HOH HOH . L 7 HOH A 24 824 1 HOH HOH . L 7 HOH A 25 825 25 HOH HOH . L 7 HOH A 26 826 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . B 2 20.093 59.632 36.456 1 77.62 ? C1 EDO 701 A 1 HETATM 2 O O1 EDO . . . B 2 20.367 58.582 35.553 1 79.01 ? O1 EDO 701 A 1 HETATM 3 C C2 EDO . . . B 2 21.334 60.467 36.651 1 81.64 ? C2 EDO 701 A 1 HETATM 4 O O2 EDO . . . B 2 22.459 59.625 36.779 1 83.64 ? O2 EDO 701 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #