data_9CBI # _model_server_result.job_id N-U89lfvP-0M_n-7xcMDMQ _model_server_result.datetime_utc '2024-11-08 06:05:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9cbi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":702}' # _entry.id 9CBI # _exptl.entry_id 9CBI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 195.281 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[4-(2-aminoethyl)phenyl]-2-sulfanylethan-1-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9CBI _cell.length_a 80.728 _cell.length_b 80.728 _cell.length_c 240.44 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9CBI _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 172 A ASP 172 1_555 J K K . A K 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.803 ? metalc ? metalc2 A OD1 ASP 172 A ASP 172 1_555 J K K . A K 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.868 ? metalc ? metalc3 A O ASP 174 A ASP 174 1_555 J K K . A K 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc4 A OD1 ASP 174 A ASP 174 1_555 K ZN ZN . A ZN 710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc5 A O HIS 176 A HIS 176 1_555 J K K . A K 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.671 ? metalc ? metalc6 A ND1 HIS 176 A HIS 176 1_555 K ZN ZN . A ZN 710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc7 A O PHE 185 A PHE 185 1_555 I K K . A K 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc8 A O ASP 188 A ASP 188 1_555 I K K . A K 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.978 ? metalc ? metalc9 A O VAL 191 A VAL 191 1_555 I K K . A K 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc10 A OG SER 195 A SER 195 1_555 J K K . A K 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.951 ? metalc ? metalc11 A O TRP 196 A TRP 196 1_555 J K K . A K 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? metalc ? metalc12 A O PHE 224 A PHE 224 1_555 I K K . A K 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.768 ? metalc ? metalc13 A OD2 ASP 267 A ASP 267 1_555 K ZN ZN . A ZN 710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? metalc ? metalc14 C S01 A1AVQ . A A1AVQ 702 1_555 K ZN ZN . A ZN 710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc15 I K K . A K 708 1_555 L O HOH . A HOH 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.806 ? metalc ? metalc16 I K K . A K 708 1_555 L O HOH . A HOH 824 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.819 ? # _chem_comp.formula 'C10 H13 N O S' _chem_comp.formula_weight 195.281 _chem_comp.id A1AVQ _chem_comp.mon_nstd_flag . _chem_comp.name 1-[4-(2-aminoethyl)phenyl]-2-sulfanylethan-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C02 S01 A1AVQ sing 1 n n C03 C02 A1AVQ sing 2 n n C05 C04 A1AVQ doub 3 n y C06 C05 A1AVQ sing 4 n y C07 C06 A1AVQ doub 5 n y C09 C08 A1AVQ sing 6 n n N10 C09 A1AVQ sing 7 n n C08 C07 A1AVQ sing 8 n n C11 C07 A1AVQ sing 9 n y C12 C11 A1AVQ doub 10 n y C04 C03 A1AVQ sing 11 n n O13 C03 A1AVQ doub 12 n n C04 C12 A1AVQ sing 13 n y C02 H021 A1AVQ sing 14 n n C02 H022 A1AVQ sing 15 n n C05 H051 A1AVQ sing 16 n n C06 H061 A1AVQ sing 17 n n C08 H082 A1AVQ sing 18 n n C08 H081 A1AVQ sing 19 n n C09 H091 A1AVQ sing 20 n n C09 H092 A1AVQ sing 21 n n C11 H111 A1AVQ sing 22 n n C12 H121 A1AVQ sing 23 n n N10 H101 A1AVQ sing 24 n n N10 H102 A1AVQ sing 25 n n S01 H011 A1AVQ sing 26 n n # _atom_sites.entry_id 9CBI _atom_sites.fract_transf_matrix[1][1] 0.012387 _atom_sites.fract_transf_matrix[1][2] 0.007152 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014304 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004159 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 701 701 EDO EDO . C 3 A1AVQ A 1 702 702 A1AVQ P2T . D 2 EDO A 1 703 703 EDO EDO . E 2 EDO A 1 704 704 EDO EDO . F 2 EDO A 1 705 705 EDO EDO . G 4 PO4 A 1 706 2 PO4 PO4 . H 4 PO4 A 1 707 3 PO4 PO4 . I 5 K A 1 708 2 K K . J 5 K A 1 709 3 K K . K 6 ZN A 1 710 1 ZN ZN . L 7 HOH A 1 801 8 HOH HOH . L 7 HOH A 2 802 32 HOH HOH . L 7 HOH A 3 803 17 HOH HOH . L 7 HOH A 4 804 22 HOH HOH . L 7 HOH A 5 805 30 HOH HOH . L 7 HOH A 6 806 3 HOH HOH . L 7 HOH A 7 807 10 HOH HOH . L 7 HOH A 8 808 21 HOH HOH . L 7 HOH A 9 809 34 HOH HOH . L 7 HOH A 10 810 2 HOH HOH . L 7 HOH A 11 811 31 HOH HOH . L 7 HOH A 12 812 9 HOH HOH . L 7 HOH A 13 813 20 HOH HOH . L 7 HOH A 14 814 28 HOH HOH . L 7 HOH A 15 815 13 HOH HOH . L 7 HOH A 16 816 5 HOH HOH . L 7 HOH A 17 817 12 HOH HOH . L 7 HOH A 18 818 6 HOH HOH . L 7 HOH A 19 819 27 HOH HOH . L 7 HOH A 20 820 16 HOH HOH . L 7 HOH A 21 821 18 HOH HOH . L 7 HOH A 22 822 14 HOH HOH . L 7 HOH A 23 823 19 HOH HOH . L 7 HOH A 24 824 1 HOH HOH . L 7 HOH A 25 825 25 HOH HOH . L 7 HOH A 26 826 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 A1AVQ . . . C 3 21.259 39.211 33.842 1 74.45 ? C02 A1AVQ 702 A 1 HETATM 2 C C03 A1AVQ . . . C 3 22.349 39.412 32.789 1 74.35 ? C03 A1AVQ 702 A 1 HETATM 3 C C04 A1AVQ . . . C 3 23.806 39.343 33.174 1 71.88 ? C04 A1AVQ 702 A 1 HETATM 4 C C05 A1AVQ . . . C 3 24.187 38.944 34.476 1 69.72 ? C05 A1AVQ 702 A 1 HETATM 5 C C06 A1AVQ . . . C 3 25.536 38.872 34.865 1 71.97 ? C06 A1AVQ 702 A 1 HETATM 6 C C07 A1AVQ . . . C 3 26.59 39.195 33.991 1 75.92 ? C07 A1AVQ 702 A 1 HETATM 7 C C08 A1AVQ . . . C 3 28.052 39.118 34.413 1 77.22 ? C08 A1AVQ 702 A 1 HETATM 8 C C09 A1AVQ . . . C 3 28.918 37.98 33.794 1 80.78 ? C09 A1AVQ 702 A 1 HETATM 9 C C11 A1AVQ . . . C 3 26.197 39.593 32.699 1 76.34 ? C11 A1AVQ 702 A 1 HETATM 10 C C12 A1AVQ . . . C 3 24.855 39.662 32.31 1 74.49 ? C12 A1AVQ 702 A 1 HETATM 11 N N10 A1AVQ . . . C 3 28.733 37.773 32.346 1 85.25 ? N10 A1AVQ 702 A 1 HETATM 12 O O13 A1AVQ . . . C 3 22.029 39.627 31.657 1 74.36 ? O13 A1AVQ 702 A 1 HETATM 13 S S01 A1AVQ . . . C 3 19.566 39.219 33.087 1 68.35 ? S01 A1AVQ 702 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 40 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #