data_9CBO
#
_model_server_result.job_id            bEhlQXW34IkIekdS2XLCPQ 
_model_server_result.datetime_utc      '2025-06-30 12:30:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9cbo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":902}' 
#
_entry.id    9CBO 
#
_exptl.entry_id    9CBO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9CBO 
_cell.length_a            187.769 
_cell.length_b            187.769 
_cell.length_c            325.547 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9CBO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
PISA monomeric 1 author_and_software_defined_assembly 5 
PISA monomeric 1 author_and_software_defined_assembly 6 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,G,H,S 1 1 
B,I,J,T 2 1 
C,K,L,M,U 3 1 
D,N,V 4 1 
E,O,P,W 5 1 
F,Q,R,X 6 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 J N N 
? 3 L N N 
? 3 M N N 
? 3 P N N 
? 3 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 398 A HIS 761 1_555 G CO COB . A COB 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? 
metalc ? metalc2 B NE2 HIS 398 B HIS 761 1_555 I CO COB . B COB 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? 
metalc ? metalc3 E NE2 HIS 398 E HIS 761 1_555 O CO COB . E COB 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? 
metalc ? metalc4 F NE2 HIS 398 F HIS 761 1_555 Q CO COB . F COB 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 309 n n 
C1 C2 GOL sing 310 n n 
C1 H11 GOL sing 311 n n 
C1 H12 GOL sing 312 n n 
O1 HO1 GOL sing 313 n n 
C2 O2 GOL sing 314 n n 
C2 C3 GOL sing 315 n n 
C2 H2 GOL sing 316 n n 
O2 HO2 GOL sing 317 n n 
C3 O3 GOL sing 318 n n 
C3 H31 GOL sing 319 n n 
C3 H32 GOL sing 320 n n 
O3 HO3 GOL sing 321 n n 
#
_atom_sites.entry_id                     9CBO 
_atom_sites.fract_transf_matrix[1][1]    0.005326 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005326 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003072 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 COB A 1 901 901 COB COB . 
H 3 GOL A 1 902 902 GOL GOL . 
I 2 COB B 1 901 901 COB COB . 
J 3 GOL B 1 902 902 GOL GOL . 
K 2 COB C 1 901 901 COB COB . 
L 3 GOL C 1 902 902 GOL GOL . 
M 3 GOL C 1 903 902 GOL GOL . 
N 2 COB D 1 901 901 COB COB . 
O 2 COB E 1 901 901 COB COB . 
P 3 GOL E 1 902 902 GOL GOL . 
Q 2 COB F 1 901 901 COB COB . 
R 3 GOL F 1 902 902 GOL GOL . 
S 4 HOH A 1 1001 66 HOH HOH . 
S 4 HOH A 2 1002 102 HOH HOH . 
S 4 HOH A 3 1003 62 HOH HOH . 
S 4 HOH A 4 1004 110 HOH HOH . 
S 4 HOH A 5 1005 101 HOH HOH . 
S 4 HOH A 6 1006 104 HOH HOH . 
S 4 HOH A 7 1007 91 HOH HOH . 
S 4 HOH A 8 1008 56 HOH HOH . 
S 4 HOH A 9 1009 58 HOH HOH . 
S 4 HOH A 10 1010 6 HOH HOH . 
S 4 HOH A 11 1011 20 HOH HOH . 
S 4 HOH A 12 1012 96 HOH HOH . 
S 4 HOH A 13 1013 95 HOH HOH . 
S 4 HOH A 14 1014 24 HOH HOH . 
S 4 HOH A 15 1015 89 HOH HOH . 
S 4 HOH A 16 1016 23 HOH HOH . 
S 4 HOH A 17 1017 31 HOH HOH . 
S 4 HOH A 18 1018 103 HOH HOH . 
S 4 HOH A 19 1019 61 HOH HOH . 
S 4 HOH A 20 1020 59 HOH HOH . 
S 4 HOH A 21 1021 21 HOH HOH . 
S 4 HOH A 22 1022 57 HOH HOH . 
S 4 HOH A 23 1023 90 HOH HOH . 
S 4 HOH A 24 1024 71 HOH HOH . 
S 4 HOH A 25 1025 46 HOH HOH . 
S 4 HOH A 26 1026 29 HOH HOH . 
S 4 HOH A 27 1027 78 HOH HOH . 
S 4 HOH A 28 1028 74 HOH HOH . 
S 4 HOH A 29 1029 86 HOH HOH . 
S 4 HOH A 30 1030 42 HOH HOH . 
T 4 HOH B 1 1001 97 HOH HOH . 
T 4 HOH B 2 1002 67 HOH HOH . 
T 4 HOH B 3 1003 54 HOH HOH . 
T 4 HOH B 4 1004 60 HOH HOH . 
T 4 HOH B 5 1005 45 HOH HOH . 
T 4 HOH B 6 1006 49 HOH HOH . 
T 4 HOH B 7 1007 25 HOH HOH . 
T 4 HOH B 8 1008 37 HOH HOH . 
T 4 HOH B 9 1009 51 HOH HOH . 
T 4 HOH B 10 1010 105 HOH HOH . 
T 4 HOH B 11 1011 68 HOH HOH . 
T 4 HOH B 12 1012 5 HOH HOH . 
T 4 HOH B 13 1013 43 HOH HOH . 
T 4 HOH B 14 1014 8 HOH HOH . 
T 4 HOH B 15 1015 98 HOH HOH . 
T 4 HOH B 16 1016 9 HOH HOH . 
T 4 HOH B 17 1017 44 HOH HOH . 
T 4 HOH B 18 1018 83 HOH HOH . 
T 4 HOH B 19 1019 47 HOH HOH . 
U 4 HOH C 1 1001 65 HOH HOH . 
U 4 HOH C 2 1002 82 HOH HOH . 
U 4 HOH C 3 1003 79 HOH HOH . 
U 4 HOH C 4 1004 18 HOH HOH . 
U 4 HOH C 5 1005 1 HOH HOH . 
U 4 HOH C 6 1006 10 HOH HOH . 
U 4 HOH C 7 1007 94 HOH HOH . 
U 4 HOH C 8 1008 16 HOH HOH . 
U 4 HOH C 9 1009 28 HOH HOH . 
U 4 HOH C 10 1010 7 HOH HOH . 
U 4 HOH C 11 1011 22 HOH HOH . 
U 4 HOH C 12 1012 19 HOH HOH . 
U 4 HOH C 13 1013 38 HOH HOH . 
U 4 HOH C 14 1014 13 HOH HOH . 
U 4 HOH C 15 1015 14 HOH HOH . 
U 4 HOH C 16 1016 11 HOH HOH . 
U 4 HOH C 17 1017 41 HOH HOH . 
U 4 HOH C 18 1018 33 HOH HOH . 
U 4 HOH C 19 1019 12 HOH HOH . 
U 4 HOH C 20 1020 26 HOH HOH . 
U 4 HOH C 21 1021 85 HOH HOH . 
U 4 HOH C 22 1022 81 HOH HOH . 
U 4 HOH C 23 1023 48 HOH HOH . 
U 4 HOH C 24 1024 15 HOH HOH . 
U 4 HOH C 25 1025 69 HOH HOH . 
U 4 HOH C 26 1026 80 HOH HOH . 
V 4 HOH D 1 1001 52 HOH HOH . 
V 4 HOH D 2 1002 99 HOH HOH . 
V 4 HOH D 3 1003 100 HOH HOH . 
V 4 HOH D 4 1004 34 HOH HOH . 
V 4 HOH D 5 1005 73 HOH HOH . 
V 4 HOH D 6 1006 2 HOH HOH . 
V 4 HOH D 7 1007 17 HOH HOH . 
V 4 HOH D 8 1008 50 HOH HOH . 
V 4 HOH D 9 1009 72 HOH HOH . 
V 4 HOH D 10 1010 36 HOH HOH . 
V 4 HOH D 11 1011 106 HOH HOH . 
V 4 HOH D 12 1012 35 HOH HOH . 
V 4 HOH D 13 1013 39 HOH HOH . 
V 4 HOH D 14 1014 92 HOH HOH . 
V 4 HOH D 15 1015 107 HOH HOH . 
V 4 HOH D 16 1016 63 HOH HOH . 
W 4 HOH E 1 1001 40 HOH HOH . 
W 4 HOH E 2 1002 88 HOH HOH . 
W 4 HOH E 3 1003 108 HOH HOH . 
W 4 HOH E 4 1004 30 HOH HOH . 
W 4 HOH E 5 1005 109 HOH HOH . 
W 4 HOH E 6 1006 76 HOH HOH . 
X 4 HOH F 1 1001 75 HOH HOH . 
X 4 HOH F 2 1002 87 HOH HOH . 
X 4 HOH F 3 1003 27 HOH HOH . 
X 4 HOH F 4 1004 4 HOH HOH . 
X 4 HOH F 5 1005 64 HOH HOH . 
X 4 HOH F 6 1006 3 HOH HOH . 
X 4 HOH F 7 1007 32 HOH HOH . 
X 4 HOH F 8 1008 93 HOH HOH . 
X 4 HOH F 9 1009 70 HOH HOH . 
X 4 HOH F 10 1010 84 HOH HOH . 
X 4 HOH F 11 1011 77 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . L 3 -21.304 -11.237 -71.708 1 120.48 ? C1 GOL 902 C 1 
HETATM 2 O O1 GOL . . . L 3 -21.095 -11.941 -72.96 1 93.72 ? O1 GOL 902 C 1 
HETATM 3 C C2 GOL . . . L 3 -21.669 -9.757 -72.106 1 197.53 ? C2 GOL 902 C 1 
HETATM 4 O O2 GOL . . . L 3 -20.645 -9.055 -72.945 1 84.27 ? O2 GOL 902 C 1 
HETATM 5 C C3 GOL . . . L 3 -23.133 -9.627 -72.683 1 185.75 ? C3 GOL 902 C 1 
HETATM 6 O O3 GOL . . . L 3 -23.16 -9.871 -74.123 1 85.34 ? O3 GOL 902 C 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           6 
#