data_9CBP # _model_server_result.job_id sgs1pybLMuuMW4U6MbE9EQ _model_server_result.datetime_utc '2025-07-13 10:30:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9cbp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":903}' # _entry.id 9CBP # _exptl.entry_id 9CBP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 135.185 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-AMINO-4-MERCAPTO-BUTYRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9CBP _cell.length_a 69.949 _cell.length_b 83.82 _cell.length_c 163.715 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9CBP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 7 A CYS 7 1_555 N ZN ZN . A ZN 913 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc2 A SG CYS 11 A CYS 11 1_555 N ZN ZN . A ZN 913 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc3 A NE2 HIS 13 A HIS 13 1_555 N ZN ZN . A ZN 913 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc4 A O ASP 53 A ASP 53 1_555 O K K . A K 914 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.779 ? metalc ? metalc5 A OD1 ASP 53 A ASP 53 1_555 O K K . A K 914 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.845 ? metalc ? metalc6 A O GLY 54 A GLY 54 1_555 O K K . A K 914 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc7 A SG CYS 256 A CYS 256 1_555 E ZN ZN . A ZN 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc8 A O GLY 321 A GLY 321 1_555 O K K . A K 914 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc9 A SG CYS 322 A CYS 322 1_555 E ZN ZN . A ZN 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc10 A SG CYS 323 A CYS 323 1_555 E ZN ZN . A ZN 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc11 A NE2 HIS 520 A HIS 520 1_555 N ZN ZN . A ZN 913 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc12 A NE2 HIS 761 A HIS 761 1_555 M CO B12 . A B12 912 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc13 D SD HCS . A HCS 903 1_555 E ZN ZN . A ZN 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? # _chem_comp.formula 'C4 H9 N O2 S' _chem_comp.formula_weight 135.185 _chem_comp.id HCS _chem_comp.mon_nstd_flag . _chem_comp.name '2-AMINO-4-MERCAPTO-BUTYRIC ACID' _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms L-Homocysteine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA HCS sing 332 n n N H HCS sing 333 n n N H2 HCS sing 334 n n CA CB HCS sing 335 n n CA C HCS sing 336 n n CA HA HCS sing 337 n n CB CG HCS sing 338 n n CB HB2 HCS sing 339 n n CB HB3 HCS sing 340 n n CG SD HCS sing 341 n n CG HG2 HCS sing 342 n n CG HG3 HCS sing 343 n n SD HD HCS sing 344 n n C OXT HCS sing 345 n n C O HCS doub 346 n n OXT HXT HCS sing 347 n n # _atom_sites.entry_id 9CBP _atom_sites.fract_transf_matrix[1][1] 0.014296 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01193 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006108 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 901 901 GOL GOL . C 2 GOL A 1 902 902 GOL GOL . D 3 HCS A 1 903 701 HCS HCS . E 4 ZN A 1 904 1 ZN ZN . F 2 GOL A 1 905 702 GOL GOL . G 2 GOL A 1 906 703 GOL GOL . H 2 GOL A 1 907 704 GOL GOL . I 2 GOL A 1 908 705 GOL GOL . J 2 GOL A 1 909 707 GOL GOL . K 2 GOL A 1 910 710 GOL GOL . L 2 GOL A 1 911 711 GOL GOL . M 5 B12 A 1 912 901 B12 B12 . N 4 ZN A 1 913 986 ZN ZN . O 6 K A 1 914 1 K K . P 7 HOH A 1 1001 73 HOH HOH . P 7 HOH A 2 1002 33 HOH HOH . P 7 HOH A 3 1003 30 HOH HOH . P 7 HOH A 4 1004 1039 HOH HOH . P 7 HOH A 5 1005 31 HOH HOH . P 7 HOH A 6 1006 3 HOH HOH . P 7 HOH A 7 1007 80 HOH HOH . P 7 HOH A 8 1008 948 HOH HOH . P 7 HOH A 9 1009 1024 HOH HOH . P 7 HOH A 10 1010 957 HOH HOH . P 7 HOH A 11 1011 1013 HOH HOH . P 7 HOH A 12 1012 937 HOH HOH . P 7 HOH A 13 1013 75 HOH HOH . P 7 HOH A 14 1014 1023 HOH HOH . P 7 HOH A 15 1015 69 HOH HOH . P 7 HOH A 16 1016 969 HOH HOH . P 7 HOH A 17 1017 1017 HOH HOH . P 7 HOH A 18 1018 13 HOH HOH . P 7 HOH A 19 1019 1007 HOH HOH . P 7 HOH A 20 1020 912 HOH HOH . P 7 HOH A 21 1021 916 HOH HOH . P 7 HOH A 22 1022 15 HOH HOH . P 7 HOH A 23 1023 1 HOH HOH . P 7 HOH A 24 1024 1002 HOH HOH . P 7 HOH A 25 1025 48 HOH HOH . P 7 HOH A 26 1026 1005 HOH HOH . P 7 HOH A 27 1027 940 HOH HOH . P 7 HOH A 28 1028 939 HOH HOH . P 7 HOH A 29 1029 965 HOH HOH . P 7 HOH A 30 1030 988 HOH HOH . P 7 HOH A 31 1031 979 HOH HOH . P 7 HOH A 32 1032 23 HOH HOH . P 7 HOH A 33 1033 956 HOH HOH . P 7 HOH A 34 1034 943 HOH HOH . P 7 HOH A 35 1035 41 HOH HOH . P 7 HOH A 36 1036 76 HOH HOH . P 7 HOH A 37 1037 79 HOH HOH . P 7 HOH A 38 1038 970 HOH HOH . P 7 HOH A 39 1039 914 HOH HOH . P 7 HOH A 40 1040 913 HOH HOH . P 7 HOH A 41 1041 47 HOH HOH . P 7 HOH A 42 1042 1003 HOH HOH . P 7 HOH A 43 1043 975 HOH HOH . P 7 HOH A 44 1044 931 HOH HOH . P 7 HOH A 45 1045 66 HOH HOH . P 7 HOH A 46 1046 942 HOH HOH . P 7 HOH A 47 1047 953 HOH HOH . P 7 HOH A 48 1048 923 HOH HOH . P 7 HOH A 49 1049 954 HOH HOH . P 7 HOH A 50 1050 1037 HOH HOH . P 7 HOH A 51 1051 1008 HOH HOH . P 7 HOH A 52 1052 1049 HOH HOH . P 7 HOH A 53 1053 967 HOH HOH . P 7 HOH A 54 1054 1010 HOH HOH . P 7 HOH A 55 1055 46 HOH HOH . P 7 HOH A 56 1056 20 HOH HOH . P 7 HOH A 57 1057 1009 HOH HOH . P 7 HOH A 58 1058 919 HOH HOH . P 7 HOH A 59 1059 910 HOH HOH . P 7 HOH A 60 1060 966 HOH HOH . P 7 HOH A 61 1061 1026 HOH HOH . P 7 HOH A 62 1062 2 HOH HOH . P 7 HOH A 63 1063 1029 HOH HOH . P 7 HOH A 64 1064 992 HOH HOH . P 7 HOH A 65 1065 963 HOH HOH . P 7 HOH A 66 1066 952 HOH HOH . P 7 HOH A 67 1067 964 HOH HOH . P 7 HOH A 68 1068 961 HOH HOH . P 7 HOH A 69 1069 6 HOH HOH . P 7 HOH A 70 1070 968 HOH HOH . P 7 HOH A 71 1071 941 HOH HOH . P 7 HOH A 72 1072 56 HOH HOH . P 7 HOH A 73 1073 987 HOH HOH . P 7 HOH A 74 1074 67 HOH HOH . P 7 HOH A 75 1075 5 HOH HOH . P 7 HOH A 76 1076 945 HOH HOH . P 7 HOH A 77 1077 946 HOH HOH . P 7 HOH A 78 1078 1048 HOH HOH . P 7 HOH A 79 1079 27 HOH HOH . P 7 HOH A 80 1080 949 HOH HOH . P 7 HOH A 81 1081 944 HOH HOH . P 7 HOH A 82 1082 951 HOH HOH . P 7 HOH A 83 1083 983 HOH HOH . P 7 HOH A 84 1084 959 HOH HOH . P 7 HOH A 85 1085 35 HOH HOH . P 7 HOH A 86 1086 925 HOH HOH . P 7 HOH A 87 1087 911 HOH HOH . P 7 HOH A 88 1088 938 HOH HOH . P 7 HOH A 89 1089 51 HOH HOH . P 7 HOH A 90 1090 960 HOH HOH . P 7 HOH A 91 1091 74 HOH HOH . P 7 HOH A 92 1092 16 HOH HOH . P 7 HOH A 93 1093 1004 HOH HOH . P 7 HOH A 94 1094 19 HOH HOH . P 7 HOH A 95 1095 907 HOH HOH . P 7 HOH A 96 1096 917 HOH HOH . P 7 HOH A 97 1097 1025 HOH HOH . P 7 HOH A 98 1098 8 HOH HOH . P 7 HOH A 99 1099 922 HOH HOH . P 7 HOH A 100 1100 4 HOH HOH . P 7 HOH A 101 1101 43 HOH HOH . P 7 HOH A 102 1102 44 HOH HOH . P 7 HOH A 103 1103 84 HOH HOH . P 7 HOH A 104 1104 1030 HOH HOH . P 7 HOH A 105 1105 17 HOH HOH . P 7 HOH A 106 1106 934 HOH HOH . P 7 HOH A 107 1107 927 HOH HOH . P 7 HOH A 108 1108 70 HOH HOH . P 7 HOH A 109 1109 25 HOH HOH . P 7 HOH A 110 1110 1014 HOH HOH . P 7 HOH A 111 1111 1035 HOH HOH . P 7 HOH A 112 1112 928 HOH HOH . P 7 HOH A 113 1113 1022 HOH HOH . P 7 HOH A 114 1114 981 HOH HOH . P 7 HOH A 115 1115 28 HOH HOH . P 7 HOH A 116 1116 958 HOH HOH . P 7 HOH A 117 1117 930 HOH HOH . P 7 HOH A 118 1118 22 HOH HOH . P 7 HOH A 119 1119 905 HOH HOH . P 7 HOH A 120 1120 924 HOH HOH . P 7 HOH A 121 1121 1006 HOH HOH . P 7 HOH A 122 1122 955 HOH HOH . P 7 HOH A 123 1123 950 HOH HOH . P 7 HOH A 124 1124 932 HOH HOH . P 7 HOH A 125 1125 7 HOH HOH . P 7 HOH A 126 1126 996 HOH HOH . P 7 HOH A 127 1127 18 HOH HOH . P 7 HOH A 128 1128 37 HOH HOH . P 7 HOH A 129 1129 921 HOH HOH . P 7 HOH A 130 1130 45 HOH HOH . P 7 HOH A 131 1131 36 HOH HOH . P 7 HOH A 132 1132 909 HOH HOH . P 7 HOH A 133 1133 12 HOH HOH . P 7 HOH A 134 1134 26 HOH HOH . P 7 HOH A 135 1135 50 HOH HOH . P 7 HOH A 136 1136 24 HOH HOH . P 7 HOH A 137 1137 918 HOH HOH . P 7 HOH A 138 1138 10 HOH HOH . P 7 HOH A 139 1139 935 HOH HOH . P 7 HOH A 140 1140 993 HOH HOH . P 7 HOH A 141 1141 978 HOH HOH . P 7 HOH A 142 1142 82 HOH HOH . P 7 HOH A 143 1143 915 HOH HOH . P 7 HOH A 144 1144 1020 HOH HOH . P 7 HOH A 145 1145 42 HOH HOH . P 7 HOH A 146 1146 1011 HOH HOH . P 7 HOH A 147 1147 71 HOH HOH . P 7 HOH A 148 1148 83 HOH HOH . P 7 HOH A 149 1149 936 HOH HOH . P 7 HOH A 150 1150 34 HOH HOH . P 7 HOH A 151 1151 9 HOH HOH . P 7 HOH A 152 1152 39 HOH HOH . P 7 HOH A 153 1153 947 HOH HOH . P 7 HOH A 154 1154 920 HOH HOH . P 7 HOH A 155 1155 72 HOH HOH . P 7 HOH A 156 1156 54 HOH HOH . P 7 HOH A 157 1157 977 HOH HOH . P 7 HOH A 158 1158 32 HOH HOH . P 7 HOH A 159 1159 52 HOH HOH . P 7 HOH A 160 1160 58 HOH HOH . P 7 HOH A 161 1161 40 HOH HOH . P 7 HOH A 162 1162 989 HOH HOH . P 7 HOH A 163 1163 994 HOH HOH . P 7 HOH A 164 1164 982 HOH HOH . P 7 HOH A 165 1165 972 HOH HOH . P 7 HOH A 166 1166 1033 HOH HOH . P 7 HOH A 167 1167 77 HOH HOH . P 7 HOH A 168 1168 68 HOH HOH . P 7 HOH A 169 1169 38 HOH HOH . P 7 HOH A 170 1170 1042 HOH HOH . P 7 HOH A 171 1171 49 HOH HOH . P 7 HOH A 172 1172 61 HOH HOH . P 7 HOH A 173 1173 65 HOH HOH . P 7 HOH A 174 1174 64 HOH HOH . P 7 HOH A 175 1175 63 HOH HOH . P 7 HOH A 176 1176 991 HOH HOH . P 7 HOH A 177 1177 997 HOH HOH . P 7 HOH A 178 1178 906 HOH HOH . P 7 HOH A 179 1179 60 HOH HOH . P 7 HOH A 180 1180 1019 HOH HOH . P 7 HOH A 181 1181 62 HOH HOH . P 7 HOH A 182 1182 995 HOH HOH . P 7 HOH A 183 1183 998 HOH HOH . P 7 HOH A 184 1184 81 HOH HOH . P 7 HOH A 185 1185 29 HOH HOH . P 7 HOH A 186 1186 980 HOH HOH . P 7 HOH A 187 1187 57 HOH HOH . P 7 HOH A 188 1188 1016 HOH HOH . P 7 HOH A 189 1189 1041 HOH HOH . P 7 HOH A 190 1190 55 HOH HOH . P 7 HOH A 191 1191 999 HOH HOH . P 7 HOH A 192 1192 85 HOH HOH . P 7 HOH A 193 1193 11 HOH HOH . P 7 HOH A 194 1194 14 HOH HOH . P 7 HOH A 195 1195 78 HOH HOH . P 7 HOH A 196 1196 1021 HOH HOH . P 7 HOH A 197 1197 1043 HOH HOH . P 7 HOH A 198 1198 59 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N HCS . . . D 3 14.402 -4.474 -15.761 1 72.73 ? N HCS 903 A 1 HETATM 2 C CA HCS . . . D 3 15.597 -3.568 -15.734 1 73.35 ? CA HCS 903 A 1 HETATM 3 C CB HCS . . . D 3 15.789 -3.137 -14.278 1 69.99 ? CB HCS 903 A 1 HETATM 4 C CG HCS . . . D 3 16.253 -1.71 -14.045 1 71.77 ? CG HCS 903 A 1 HETATM 5 S SD HCS . . . D 3 16.924 -1.469 -12.363 1 75.73 ? SD HCS 903 A 1 HETATM 6 C C HCS . . . D 3 16.887 -4.241 -16.317 1 66.77 ? C HCS 903 A 1 HETATM 7 O OXT HCS . . . D 3 17.695 -3.515 -16.953 1 64.73 ? OXT HCS 903 A 1 HETATM 8 O O HCS . . . D 3 17.064 -5.487 -16.159 1 58.9 ? O HCS 903 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 40 _model_server_stats.query_time_ms 547 _model_server_stats.encode_time_ms 19 _model_server_stats.element_count 8 #