data_9CC0 # _model_server_result.job_id nLRfEkUb3wsFyA-SehqKdQ _model_server_result.datetime_utc '2024-10-12 15:32:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9cc0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1000}' # _entry.id 9CC0 # _exptl.entry_id 9CC0 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9CC0 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9CC0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 J N N ? 3 L N N ? 3 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 433 A THR 530 1_555 I MG MG . A MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc2 H O1G ATP . A ATP 1000 1_555 I MG MG . A MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc3 B OG1 THR 433 B THR 530 1_555 K MG MG . B MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc4 J O1G ATP . B ATP 1000 1_555 K MG MG . B MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc5 C OG1 THR 433 C THR 530 1_555 M MG MG . C MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc6 C OD2 ASP 493 C ASP 590 1_555 M MG MG . C MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.831 ? metalc ? metalc7 L O1G ATP . C ATP 1000 1_555 M MG MG . C MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc8 D OG1 THR 433 D THR 530 1_555 O MG MG . D MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc9 N O3G ATP . D ATP 1000 1_555 O MG MG . D MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 9CC0 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 3 ATP A 1 1000 1000 ATP ATP . I 4 MG A 1 1001 1001 MG MG . J 3 ATP B 1 1000 1000 ATP ATP . K 4 MG B 1 1001 1001 MG MG . L 3 ATP C 1 1000 1000 ATP ATP . M 4 MG C 1 1001 1001 MG MG . N 3 ATP D 1 1000 1000 ATP ATP . O 4 MG D 1 1001 1001 MG MG . P 5 ADP E 1 1000 1000 ADP ADP . Q 5 ADP F 1 1000 1000 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . J 3 149.571 168.94 139.342 1 63.27 ? PG ATP 1000 B 1 HETATM 2 O O1G ATP . . . J 3 150.67 169.174 138.364 1 63.27 ? O1G ATP 1000 B 1 HETATM 3 O O2G ATP . . . J 3 149.476 167.492 139.831 1 63.27 ? O2G ATP 1000 B 1 HETATM 4 O O3G ATP . . . J 3 149.619 169.875 140.553 1 63.27 ? O3G ATP 1000 B 1 HETATM 5 P PB ATP . . . J 3 147.516 170.146 137.546 1 63.27 ? PB ATP 1000 B 1 HETATM 6 O O1B ATP . . . J 3 148.48 171.146 137.057 1 63.27 ? O1B ATP 1000 B 1 HETATM 7 O O2B ATP . . . J 3 146.204 170.693 138.099 1 63.27 ? O2B ATP 1000 B 1 HETATM 8 O O3B ATP . . . J 3 148.155 169.23 138.669 1 63.27 ? O3B ATP 1000 B 1 HETATM 9 P PA ATP . . . J 3 147.064 169.063 134.842 1 63.27 ? PA ATP 1000 B 1 HETATM 10 O O1A ATP . . . J 3 148.399 168.895 134.236 1 63.27 ? O1A ATP 1000 B 1 HETATM 11 O O2A ATP . . . J 3 146.321 170.325 134.419 1 63.27 ? O2A ATP 1000 B 1 HETATM 12 O O3A ATP . . . J 3 147.146 169.085 136.421 1 63.27 ? O3A ATP 1000 B 1 HETATM 13 O O5' ATP . . . J 3 146.126 167.829 134.55 1 63.27 ? O5' ATP 1000 B 1 HETATM 14 C C5' ATP . . . J 3 144.776 167.782 135.055 1 63.27 ? C5' ATP 1000 B 1 HETATM 15 C C4' ATP . . . J 3 143.92 167.032 134.069 1 63.27 ? C4' ATP 1000 B 1 HETATM 16 O O4' ATP . . . J 3 142.552 167.479 134.184 1 63.27 ? O4' ATP 1000 B 1 HETATM 17 C C3' ATP . . . J 3 144.289 167.243 132.606 1 63.27 ? C3' ATP 1000 B 1 HETATM 18 O O3' ATP . . . J 3 143.912 166.12 131.819 1 63.27 ? O3' ATP 1000 B 1 HETATM 19 C C2' ATP . . . J 3 143.469 168.479 132.241 1 63.27 ? C2' ATP 1000 B 1 HETATM 20 O O2' ATP . . . J 3 143.188 168.524 130.848 1 63.27 ? O2' ATP 1000 B 1 HETATM 21 C C1' ATP . . . J 3 142.187 168.238 133.044 1 63.27 ? C1' ATP 1000 B 1 HETATM 22 N N9 ATP . . . J 3 141.531 169.457 133.498 1 63.27 ? N9 ATP 1000 B 1 HETATM 23 C C8 ATP . . . J 3 141.843 170.198 134.608 1 63.27 ? C8 ATP 1000 B 1 HETATM 24 N N7 ATP . . . J 3 141.085 171.253 134.778 1 63.27 ? N7 ATP 1000 B 1 HETATM 25 C C5 ATP . . . J 3 140.21 171.203 133.705 1 63.27 ? C5 ATP 1000 B 1 HETATM 26 C C6 ATP . . . J 3 139.15 172.037 133.304 1 63.27 ? C6 ATP 1000 B 1 HETATM 27 N N6 ATP . . . J 3 138.776 173.135 133.968 1 63.27 ? N6 ATP 1000 B 1 HETATM 28 N N1 ATP . . . J 3 138.477 171.704 132.182 1 63.27 ? N1 ATP 1000 B 1 HETATM 29 C C2 ATP . . . J 3 138.845 170.608 131.514 1 63.27 ? C2 ATP 1000 B 1 HETATM 30 N N3 ATP . . . J 3 139.825 169.747 131.795 1 63.27 ? N3 ATP 1000 B 1 HETATM 31 C C4 ATP . . . J 3 140.473 170.101 132.908 1 63.27 ? C4 ATP 1000 B 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 43 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #