data_9CC0 # _model_server_result.job_id JPrj_q8EVLzP9zayczmwlA _model_server_result.datetime_utc '2024-10-12 15:22:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9cc0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":1000}' # _entry.id 9CC0 # _exptl.entry_id 9CC0 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9CC0 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9CC0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 J N N ? 3 L N N ? 3 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 433 A THR 530 1_555 I MG MG . A MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc2 H O1G ATP . A ATP 1000 1_555 I MG MG . A MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc3 B OG1 THR 433 B THR 530 1_555 K MG MG . B MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc4 J O1G ATP . B ATP 1000 1_555 K MG MG . B MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc5 C OG1 THR 433 C THR 530 1_555 M MG MG . C MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc6 C OD2 ASP 493 C ASP 590 1_555 M MG MG . C MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.831 ? metalc ? metalc7 L O1G ATP . C ATP 1000 1_555 M MG MG . C MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc8 D OG1 THR 433 D THR 530 1_555 O MG MG . D MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc9 N O3G ATP . D ATP 1000 1_555 O MG MG . D MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 9CC0 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 3 ATP A 1 1000 1000 ATP ATP . I 4 MG A 1 1001 1001 MG MG . J 3 ATP B 1 1000 1000 ATP ATP . K 4 MG B 1 1001 1001 MG MG . L 3 ATP C 1 1000 1000 ATP ATP . M 4 MG C 1 1001 1001 MG MG . N 3 ATP D 1 1000 1000 ATP ATP . O 4 MG D 1 1001 1001 MG MG . P 5 ADP E 1 1000 1000 ADP ADP . Q 5 ADP F 1 1000 1000 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . N 3 178.051 138.409 168.643 1 79.39 ? PG ATP 1000 D 1 HETATM 2 O O1G ATP . . . N 3 176.618 138.351 169.05 1 79.39 ? O1G ATP 1000 D 1 HETATM 3 O O2G ATP . . . N 3 178.855 139.492 169.372 1 79.39 ? O2G ATP 1000 D 1 HETATM 4 O O3G ATP . . . N 3 178.254 138.566 167.133 1 79.39 ? O3G ATP 1000 D 1 HETATM 5 P PB ATP . . . N 3 178.512 135.48 169.042 1 79.39 ? PB ATP 1000 D 1 HETATM 6 O O1B ATP . . . N 3 177.472 135.132 170.027 1 79.39 ? O1B ATP 1000 D 1 HETATM 7 O O2B ATP . . . N 3 178.237 135.041 167.607 1 79.39 ? O2B ATP 1000 D 1 HETATM 8 O O3B ATP . . . N 3 178.794 137.041 169.009 1 79.39 ? O3B ATP 1000 D 1 HETATM 9 P PA ATP . . . N 3 181.335 134.669 168.727 1 79.39 ? PA ATP 1000 D 1 HETATM 10 O O1A ATP . . . N 3 181.842 135.916 168.12 1 79.39 ? O1A ATP 1000 D 1 HETATM 11 O O2A ATP . . . N 3 181.16 133.499 167.763 1 79.39 ? O2A ATP 1000 D 1 HETATM 12 O O3A ATP . . . N 3 179.938 134.899 169.443 1 79.39 ? O3A ATP 1000 D 1 HETATM 13 O O5' ATP . . . N 3 182.265 134.194 169.91 1 79.39 ? O5' ATP 1000 D 1 HETATM 14 C C5' ATP . . . N 3 181.75 133.384 170.987 1 79.39 ? C5' ATP 1000 D 1 HETATM 15 C C4' ATP . . . N 3 182.892 132.605 171.585 1 79.39 ? C4' ATP 1000 D 1 HETATM 16 O O4' ATP . . . N 3 182.379 131.422 172.237 1 79.39 ? O4' ATP 1000 D 1 HETATM 17 C C3' ATP . . . N 3 183.93 132.107 170.583 1 79.39 ? C3' ATP 1000 D 1 HETATM 18 O O3' ATP . . . N 3 185.224 132.054 171.172 1 79.39 ? O3' ATP 1000 D 1 HETATM 19 C C2' ATP . . . N 3 183.412 130.711 170.238 1 79.39 ? C2' ATP 1000 D 1 HETATM 20 O O2' ATP . . . N 3 184.465 129.85 169.822 1 79.39 ? O2' ATP 1000 D 1 HETATM 21 C C1' ATP . . . N 3 182.861 130.259 171.59 1 79.39 ? C1' ATP 1000 D 1 HETATM 22 N N9 ATP . . . N 3 181.768 129.299 171.501 1 79.39 ? N9 ATP 1000 D 1 HETATM 23 C C8 ATP . . . N 3 180.426 129.57 171.512 1 79.39 ? C8 ATP 1000 D 1 HETATM 24 N N7 ATP . . . N 3 179.664 128.507 171.423 1 79.39 ? N7 ATP 1000 D 1 HETATM 25 C C5 ATP . . . N 3 180.57 127.461 171.349 1 79.39 ? C5 ATP 1000 D 1 HETATM 26 C C6 ATP . . . N 3 180.405 126.067 171.24 1 79.39 ? C6 ATP 1000 D 1 HETATM 27 N N6 ATP . . . N 3 179.216 125.46 171.182 1 79.39 ? N6 ATP 1000 D 1 HETATM 28 N N1 ATP . . . N 3 181.519 125.305 171.191 1 79.39 ? N1 ATP 1000 D 1 HETATM 29 C C2 ATP . . . N 3 182.711 125.904 171.248 1 79.39 ? C2 ATP 1000 D 1 HETATM 30 N N3 ATP . . . N 3 182.989 127.205 171.35 1 79.39 ? N3 ATP 1000 D 1 HETATM 31 C C4 ATP . . . N 3 181.871 127.934 171.398 1 79.39 ? C4 ATP 1000 D 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #