data_9CCX # _model_server_result.job_id 3BVfuWhiuxZE9u4CKTzgWg _model_server_result.datetime_utc '2025-09-20 21:14:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9ccx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 9CCX # _exptl.entry_id 9CCX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 454.466 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(5-{4-[4-(trifluoromethyl)pyridin-2-yl]piperazine-1-sulfonyl}-2,3-dihydro-1H-indol-1-yl)ethan-1-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9CCX _cell.length_a 106.63 _cell.length_b 106.63 _cell.length_c 54.27 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9CCX _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall 'P 32 2"' _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 8 A ASP 8 1_555 D MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc2 A NE2 HIS 10 A HIS 10 1_555 D MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc3 A OD2 ASP 41 A ASP 41 1_555 D MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc4 A OD2 ASP 41 A ASP 41 1_555 E MN MN . A MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc5 A OD1 ASN 79 A ASN 79 1_555 E MN MN . A MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc6 A NE2 HIS 114 A HIS 114 1_555 E MN MN . A MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc7 A ND1 HIS 195 A HIS 195 1_555 E MN MN . A MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc8 A NE2 HIS 197 A HIS 197 1_555 D MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc9 D MN MN . A MN 303 1_555 F O HOH . A HOH 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc10 E MN MN . A MN 304 1_555 F O HOH . A HOH 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? # _chem_comp.formula 'C20 H21 F3 N4 O3 S' _chem_comp.formula_weight 454.466 _chem_comp.id A1AVZ _chem_comp.mon_nstd_flag . _chem_comp.name 1-(5-{4-[4-(trifluoromethyl)pyridin-2-yl]piperazine-1-sulfonyl}-2,3-dihydro-1H-indol-1-yl)ethan-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N02 C01 A1AVZ doub 1 n y C03 N02 A1AVZ sing 2 n y C05 N04 A1AVZ sing 3 n n C06 C05 A1AVZ sing 4 n n N07 C06 A1AVZ sing 5 n n C09 C08 A1AVZ sing 6 n n C08 N07 A1AVZ sing 7 n n S10 N07 A1AVZ sing 8 n n O11 S10 A1AVZ doub 9 n n O12 S10 A1AVZ doub 10 n n C13 S10 A1AVZ sing 11 n n C14 C13 A1AVZ doub 12 n y C15 C14 A1AVZ sing 13 n y C16 C15 A1AVZ doub 14 n y C17 C16 A1AVZ sing 15 n y C18 C17 A1AVZ doub 16 n y C19 C17 A1AVZ sing 17 n n C20 C19 A1AVZ sing 18 n n N21 C20 A1AVZ sing 19 n n C22 N21 A1AVZ sing 20 n n O23 C22 A1AVZ doub 21 n n C24 C22 A1AVZ sing 22 n n N04 C03 A1AVZ sing 23 n n C25 C03 A1AVZ doub 24 n y C26 C25 A1AVZ sing 25 n y C27 C26 A1AVZ doub 26 n y C28 C26 A1AVZ sing 27 n n F29 C28 A1AVZ sing 28 n n F30 C28 A1AVZ sing 29 n n F31 C28 A1AVZ sing 30 n n C01 C27 A1AVZ sing 31 n y N04 C09 A1AVZ sing 32 n n C13 C18 A1AVZ sing 33 n y C16 N21 A1AVZ sing 34 n n C15 H151 A1AVZ sing 35 n n C20 H201 A1AVZ sing 36 n n C20 H202 A1AVZ sing 37 n n C24 H241 A1AVZ sing 38 n n C24 H242 A1AVZ sing 39 n n C24 H243 A1AVZ sing 40 n n C01 H011 A1AVZ sing 41 n n C05 H051 A1AVZ sing 42 n n C05 H052 A1AVZ sing 43 n n C06 H061 A1AVZ sing 44 n n C06 H062 A1AVZ sing 45 n n C08 H082 A1AVZ sing 46 n n C08 H081 A1AVZ sing 47 n n C09 H091 A1AVZ sing 48 n n C09 H092 A1AVZ sing 49 n n C14 H141 A1AVZ sing 50 n n C18 H181 A1AVZ sing 51 n n C19 H192 A1AVZ sing 52 n n C19 H191 A1AVZ sing 53 n n C25 H251 A1AVZ sing 54 n n C27 H271 A1AVZ sing 55 n n # _atom_sites.entry_id 9CCX _atom_sites.fract_transf_matrix[1][1] 0.009378 _atom_sites.fract_transf_matrix[1][2] 0.005415 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010829 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018426 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1AVZ A 1 301 301 A1AVZ LIG . C 3 PG4 A 1 302 302 PG4 PG4 . D 4 MN A 1 303 1 MN MN . E 4 MN A 1 304 2 MN MN . F 5 HOH A 1 401 15 HOH HOH . F 5 HOH A 2 402 39 HOH HOH . F 5 HOH A 3 403 33 HOH HOH . F 5 HOH A 4 404 10 HOH HOH . F 5 HOH A 5 405 11 HOH HOH . F 5 HOH A 6 406 12 HOH HOH . F 5 HOH A 7 407 1 HOH HOH . F 5 HOH A 8 408 2 HOH HOH . F 5 HOH A 9 409 21 HOH HOH . F 5 HOH A 10 410 13 HOH HOH . F 5 HOH A 11 411 9 HOH HOH . F 5 HOH A 12 412 17 HOH HOH . F 5 HOH A 13 413 14 HOH HOH . F 5 HOH A 14 414 27 HOH HOH . F 5 HOH A 15 415 19 HOH HOH . F 5 HOH A 16 416 5 HOH HOH . F 5 HOH A 17 417 24 HOH HOH . F 5 HOH A 18 418 22 HOH HOH . F 5 HOH A 19 419 18 HOH HOH . F 5 HOH A 20 420 28 HOH HOH . F 5 HOH A 21 421 8 HOH HOH . F 5 HOH A 22 422 26 HOH HOH . F 5 HOH A 23 423 31 HOH HOH . F 5 HOH A 24 424 23 HOH HOH . F 5 HOH A 25 425 30 HOH HOH . F 5 HOH A 26 426 4 HOH HOH . F 5 HOH A 27 427 34 HOH HOH . F 5 HOH A 28 428 7 HOH HOH . F 5 HOH A 29 429 25 HOH HOH . F 5 HOH A 30 430 6 HOH HOH . F 5 HOH A 31 431 29 HOH HOH . F 5 HOH A 32 432 38 HOH HOH . F 5 HOH A 33 433 37 HOH HOH . F 5 HOH A 34 434 3 HOH HOH . F 5 HOH A 35 435 20 HOH HOH . F 5 HOH A 36 436 16 HOH HOH . F 5 HOH A 37 437 43 HOH HOH . F 5 HOH A 38 438 35 HOH HOH . F 5 HOH A 39 439 41 HOH HOH . F 5 HOH A 40 440 40 HOH HOH . F 5 HOH A 41 441 36 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 A1AVZ . . . B 2 -36.419 -10.81 1.858 1 55.88 ? C13 A1AVZ 301 A 1 HETATM 2 C C15 A1AVZ . . . B 2 -34.392 -11.618 2.883 1 55.4 ? C15 A1AVZ 301 A 1 HETATM 3 C C17 A1AVZ . . . B 2 -34.356 -9.609 1.503 1 53.62 ? C17 A1AVZ 301 A 1 HETATM 4 C C20 A1AVZ . . . B 2 -32.001 -9.056 1.493 1 61.47 ? C20 A1AVZ 301 A 1 HETATM 5 C C22 A1AVZ . . . B 2 -31.259 -10.823 3.208 1 57.56 ? C22 A1AVZ 301 A 1 HETATM 6 C C24 A1AVZ . . . B 2 -29.816 -10.319 3.191 1 45.89 ? C24 A1AVZ 301 A 1 HETATM 7 C C26 A1AVZ . . . B 2 -39.69 -5.721 7.559 1 51.64 ? C26 A1AVZ 301 A 1 HETATM 8 C C28 A1AVZ . . . B 2 -39.673 -4.197 7.529 1 54.14 ? C28 A1AVZ 301 A 1 HETATM 9 C C01 A1AVZ . . . B 2 -39.874 -7.794 8.738 1 51.3 ? C01 A1AVZ 301 A 1 HETATM 10 C C03 A1AVZ . . . B 2 -39.592 -7.821 6.453 1 47.31 ? C03 A1AVZ 301 A 1 HETATM 11 C C05 A1AVZ . . . B 2 -39.555 -7.959 3.932 1 42.48 ? C05 A1AVZ 301 A 1 HETATM 12 C C06 A1AVZ . . . B 2 -38.67 -8.674 2.921 1 40.45 ? C06 A1AVZ 301 A 1 HETATM 13 C C08 A1AVZ . . . B 2 -38.842 -10.722 4.212 1 38.19 ? C08 A1AVZ 301 A 1 HETATM 14 C C09 A1AVZ . . . B 2 -39.743 -9.998 5.206 1 41.42 ? C09 A1AVZ 301 A 1 HETATM 15 C C14 A1AVZ . . . B 2 -35.758 -11.753 2.668 1 48.68 ? C14 A1AVZ 301 A 1 HETATM 16 C C16 A1AVZ . . . B 2 -33.689 -10.55 2.298 1 49.96 ? C16 A1AVZ 301 A 1 HETATM 17 C C18 A1AVZ . . . B 2 -35.737 -9.731 1.28 1 43.89 ? C18 A1AVZ 301 A 1 HETATM 18 C C19 A1AVZ . . . B 2 -33.34 -8.575 1.024 1 55.16 ? C19 A1AVZ 301 A 1 HETATM 19 C C25 A1AVZ . . . B 2 -39.555 -6.44 6.387 1 36.82 ? C25 A1AVZ 301 A 1 HETATM 20 C C27 A1AVZ . . . B 2 -39.854 -6.406 8.761 1 50.16 ? C27 A1AVZ 301 A 1 HETATM 21 F F29 A1AVZ . . . B 2 -38.387 -3.782 7.609 1 52.41 ? F29 A1AVZ 301 A 1 HETATM 22 F F30 A1AVZ . . . B 2 -40.206 -3.714 6.363 1 54.21 ? F30 A1AVZ 301 A 1 HETATM 23 F F31 A1AVZ . . . B 2 -40.381 -3.744 8.604 1 55.25 ? F31 A1AVZ 301 A 1 HETATM 24 N N02 A1AVZ . . . B 2 -39.748 -8.454 7.603 1 43.16 ? N02 A1AVZ 301 A 1 HETATM 25 N N04 A1AVZ . . . B 2 -39.442 -8.581 5.238 1 41.99 ? N04 A1AVZ 301 A 1 HETATM 26 N N07 A1AVZ . . . B 2 -38.893 -10.121 2.89 1 48.07 ? N07 A1AVZ 301 A 1 HETATM 27 N N21 A1AVZ . . . B 2 -32.248 -10.174 2.372 1 61.11 ? N21 A1AVZ 301 A 1 HETATM 28 O O11 A1AVZ . . . B 2 -38.606 -10.466 0.284 1 45.47 ? O11 A1AVZ 301 A 1 HETATM 29 O O12 A1AVZ . . . B 2 -38.63 -12.388 1.599 1 51.63 ? O12 A1AVZ 301 A 1 HETATM 30 O O23 A1AVZ . . . B 2 -31.575 -11.741 3.89 1 54.51 ? O23 A1AVZ 301 A 1 HETATM 31 S S10 A1AVZ . . . B 2 -38.201 -10.989 1.601 1 41.54 ? S10 A1AVZ 301 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #