data_9CD5
#
_model_server_result.job_id            6URVyM_sg7Im08X0n-C9Qg 
_model_server_result.datetime_utc      '2024-11-16 04:43:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9cd5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":902}' 
#
_entry.id    9CD5 
#
_exptl.entry_id    9CD5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              559.467 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (3P)-5-[(1R)-1-(3,5-dichloropyridin-4-yl)ethoxy]-3-{6-[6-(methanesulfonyl)-2,6-diazaspiro[3.3]heptan-2-yl]pyridin-3-yl}-1H-indazole 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          107.185 
_cell.angle_gamma         90 
_cell.entry_id            9CD5 
_cell.length_a            206.03 
_cell.length_b            57.614 
_cell.length_c            65.694 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9CD5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L,M,N,U 1 1 
B,O,P,Q,R,S,T,V 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 P N N 
#
_chem_comp.formula           'C25 H24 Cl2 N6 O3 S' 
_chem_comp.formula_weight    559.467 
_chem_comp.id                A1AV2 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (3P)-5-[(1R)-1-(3,5-dichloropyridin-4-yl)ethoxy]-3-{6-[6-(methanesulfonyl)-2,6-diazaspiro[3.3]heptan-2-yl]pyridin-3-yl}-1H-indazole 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 A1AV2 sing 1 n n 
C2 C3 A1AV2 sing 2 n n 
C2 O1 A1AV2 sing 3 n n 
C3 C4 A1AV2 doub 4 n y 
C3 C7 A1AV2 sing 5 n y 
C4 CL1 A1AV2 sing 6 n n 
C4 C5 A1AV2 sing 7 n y 
C5 N1 A1AV2 doub 8 n y 
N1 C6 A1AV2 sing 9 n y 
C6 C7 A1AV2 doub 10 n y 
C7 CL2 A1AV2 sing 11 n n 
O1 C8 A1AV2 sing 12 n n 
C8 C9 A1AV2 doub 13 n y 
C8 C11 A1AV2 sing 14 n y 
C9 C10 A1AV2 sing 15 n y 
C10 C13 A1AV2 doub 16 n y 
C11 C12 A1AV2 doub 17 n y 
C12 C13 A1AV2 sing 18 n y 
C12 C14 A1AV2 sing 19 n y 
C13 N2 A1AV2 sing 20 n y 
N2 N3 A1AV2 sing 21 n y 
N3 C14 A1AV2 doub 22 n y 
C14 C15 A1AV2 sing 23 n n 
C15 C16 A1AV2 doub 24 n y 
C15 C18 A1AV2 sing 25 n y 
C16 C17 A1AV2 sing 26 n y 
C17 C19 A1AV2 doub 27 n y 
C18 N4 A1AV2 doub 28 n y 
N4 C19 A1AV2 sing 29 n y 
C19 N5 A1AV2 sing 30 n n 
N5 C20 A1AV2 sing 31 n n 
N5 C21 A1AV2 sing 32 n n 
C20 C22 A1AV2 sing 33 n n 
C21 C22 A1AV2 sing 34 n n 
C22 C23 A1AV2 sing 35 n n 
C22 C24 A1AV2 sing 36 n n 
C23 N6 A1AV2 sing 37 n n 
C24 N6 A1AV2 sing 38 n n 
N6 S1 A1AV2 sing 39 n n 
S1 C25 A1AV2 sing 40 n n 
S1 O2 A1AV2 doub 41 n n 
S1 O3 A1AV2 doub 42 n n 
C1 H2 A1AV2 sing 43 n n 
C1 H1 A1AV2 sing 44 n n 
C1 H3 A1AV2 sing 45 n n 
C2 H4 A1AV2 sing 46 n n 
C5 H5 A1AV2 sing 47 n n 
C6 H6 A1AV2 sing 48 n n 
C10 H8 A1AV2 sing 49 n n 
C9 H7 A1AV2 sing 50 n n 
C11 H9 A1AV2 sing 51 n n 
N2 H10 A1AV2 sing 52 n n 
C16 H11 A1AV2 sing 53 n n 
C17 H12 A1AV2 sing 54 n n 
C18 H13 A1AV2 sing 55 n n 
C20 H14 A1AV2 sing 56 n n 
C20 H15 A1AV2 sing 57 n n 
C21 H17 A1AV2 sing 58 n n 
C21 H16 A1AV2 sing 59 n n 
C23 H18 A1AV2 sing 60 n n 
C23 H19 A1AV2 sing 61 n n 
C24 H21 A1AV2 sing 62 n n 
C24 H20 A1AV2 sing 63 n n 
C25 H22 A1AV2 sing 64 n n 
C25 H23 A1AV2 sing 65 n n 
C25 H24 A1AV2 sing 66 n n 
#
_atom_sites.entry_id                     9CD5 
_atom_sites.fract_transf_matrix[1][1]    0.004854 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001501 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017357 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015933 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 EDO A 1 901 901 EDO EDO . 
D 2 EDO A 1 902 1001 EDO EDO . 
E 3 A1AV2 A 1 903 1002 A1AV2 300 . 
F 4 SO4 A 1 904 1 SO4 SO4 . 
G 4 SO4 A 1 905 2 SO4 SO4 . 
H 4 SO4 A 1 906 4 SO4 SO4 . 
I 4 SO4 A 1 907 5 SO4 SO4 . 
J 4 SO4 A 1 908 6 SO4 SO4 . 
K 4 SO4 A 1 909 7 SO4 SO4 . 
L 4 SO4 A 1 910 8 SO4 SO4 . 
M 4 SO4 A 1 911 9 SO4 SO4 . 
N 4 SO4 A 1 912 12 SO4 SO4 . 
O 2 EDO B 1 901 901 EDO EDO . 
P 3 A1AV2 B 1 902 902 A1AV2 300 . 
Q 4 SO4 B 1 903 3 SO4 SO4 . 
R 4 SO4 B 1 904 10 SO4 SO4 . 
S 4 SO4 B 1 905 11 SO4 SO4 . 
T 4 SO4 B 1 906 13 SO4 SO4 . 
U 5 HOH A 1 1001 73 HOH HOH . 
U 5 HOH A 2 1002 3 HOH HOH . 
U 5 HOH A 3 1003 17 HOH HOH . 
U 5 HOH A 4 1004 11 HOH HOH . 
U 5 HOH A 5 1005 69 HOH HOH . 
U 5 HOH A 6 1006 59 HOH HOH . 
U 5 HOH A 7 1007 48 HOH HOH . 
U 5 HOH A 8 1008 22 HOH HOH . 
U 5 HOH A 9 1009 53 HOH HOH . 
U 5 HOH A 10 1010 60 HOH HOH . 
U 5 HOH A 11 1011 90 HOH HOH . 
U 5 HOH A 12 1012 79 HOH HOH . 
U 5 HOH A 13 1013 21 HOH HOH . 
U 5 HOH A 14 1014 100 HOH HOH . 
U 5 HOH A 15 1015 52 HOH HOH . 
U 5 HOH A 16 1016 46 HOH HOH . 
U 5 HOH A 17 1017 76 HOH HOH . 
U 5 HOH A 18 1018 50 HOH HOH . 
U 5 HOH A 19 1019 58 HOH HOH . 
U 5 HOH A 20 1020 7 HOH HOH . 
U 5 HOH A 21 1021 78 HOH HOH . 
U 5 HOH A 22 1022 104 HOH HOH . 
U 5 HOH A 23 1023 19 HOH HOH . 
U 5 HOH A 24 1024 6 HOH HOH . 
U 5 HOH A 25 1025 45 HOH HOH . 
U 5 HOH A 26 1026 105 HOH HOH . 
U 5 HOH A 27 1027 72 HOH HOH . 
U 5 HOH A 28 1028 65 HOH HOH . 
U 5 HOH A 29 1029 74 HOH HOH . 
U 5 HOH A 30 1030 88 HOH HOH . 
U 5 HOH A 31 1031 103 HOH HOH . 
U 5 HOH A 32 1032 96 HOH HOH . 
V 5 HOH B 1 1001 32 HOH HOH . 
V 5 HOH B 2 1002 57 HOH HOH . 
V 5 HOH B 3 1003 63 HOH HOH . 
V 5 HOH B 4 1004 23 HOH HOH . 
V 5 HOH B 5 1005 62 HOH HOH . 
V 5 HOH B 6 1006 15 HOH HOH . 
V 5 HOH B 7 1007 44 HOH HOH . 
V 5 HOH B 8 1008 18 HOH HOH . 
V 5 HOH B 9 1009 8 HOH HOH . 
V 5 HOH B 10 1010 34 HOH HOH . 
V 5 HOH B 11 1011 82 HOH HOH . 
V 5 HOH B 12 1012 61 HOH HOH . 
V 5 HOH B 13 1013 30 HOH HOH . 
V 5 HOH B 14 1014 101 HOH HOH . 
V 5 HOH B 15 1015 42 HOH HOH . 
V 5 HOH B 16 1016 36 HOH HOH . 
V 5 HOH B 17 1017 33 HOH HOH . 
V 5 HOH B 18 1018 39 HOH HOH . 
V 5 HOH B 19 1019 83 HOH HOH . 
V 5 HOH B 20 1020 93 HOH HOH . 
V 5 HOH B 21 1021 25 HOH HOH . 
V 5 HOH B 22 1022 81 HOH HOH . 
V 5 HOH B 23 1023 35 HOH HOH . 
V 5 HOH B 24 1024 38 HOH HOH . 
V 5 HOH B 25 1025 87 HOH HOH . 
V 5 HOH B 26 1026 106 HOH HOH . 
V 5 HOH B 27 1027 28 HOH HOH . 
V 5 HOH B 28 1028 66 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 A1AV2 . . . P 3 -30.741 -22.962 -23.319 1 38.51 0 C1 A1AV2 902 B 1 
HETATM 2 C C2 A1AV2 . . . P 3 -30.324 -24.41 -23.166 1 40.76 0 C2 A1AV2 902 B 1 
HETATM 3 C C3 A1AV2 . . . P 3 -31.514 -25.292 -22.856 1 46.08 0 C3 A1AV2 902 B 1 
HETATM 4 C C4 A1AV2 . . . P 3 -32.107 -25.341 -21.594 1 47.2 0 C4 A1AV2 902 B 1 
HETATM 5 C C5 A1AV2 . . . P 3 -33.195 -26.157 -21.373 1 48.42 0 C5 A1AV2 902 B 1 
HETATM 6 C C6 A1AV2 . . . P 3 -33.181 -26.889 -23.533 1 52.95 0 C6 A1AV2 902 B 1 
HETATM 7 C C10 A1AV2 . . . P 3 -26.819 -26.516 -20.536 1 33.1 0 C10 A1AV2 902 B 1 
HETATM 8 C C13 A1AV2 . . . P 3 -26.948 -27.681 -21.297 1 33.21 0 C13 A1AV2 902 B 1 
HETATM 9 CL CL1 A1AV2 . . . P 3 -31.51 -24.398 -20.259 1 48.28 0 CL1 A1AV2 902 B 1 
HETATM 10 N N1 A1AV2 . . . P 3 -33.732 -26.92 -22.322 1 49.75 0 N1 A1AV2 902 B 1 
HETATM 11 C C7 A1AV2 . . . P 3 -32.09 -26.1 -23.837 1 53.66 0 C7 A1AV2 902 B 1 
HETATM 12 CL CL2 A1AV2 . . . P 3 -31.463 -26.151 -25.46 1 70.11 0 CL2 A1AV2 902 B 1 
HETATM 13 O O1 A1AV2 . . . P 3 -29.319 -24.399 -22.125 1 40.4 0 O1 A1AV2 902 B 1 
HETATM 14 C C8 A1AV2 . . . P 3 -28.56 -25.521 -21.901 1 36.27 0 C8 A1AV2 902 B 1 
HETATM 15 C C9 A1AV2 . . . P 3 -27.634 -25.451 -20.848 1 33.98 0 C9 A1AV2 902 B 1 
HETATM 16 C C11 A1AV2 . . . P 3 -28.688 -26.683 -22.656 1 36.27 0 C11 A1AV2 902 B 1 
HETATM 17 C C12 A1AV2 . . . P 3 -27.873 -27.775 -22.347 1 34.11 0 C12 A1AV2 902 B 1 
HETATM 18 N N2 A1AV2 . . . P 3 -26.313 -28.891 -21.247 1 35.26 0 N2 A1AV2 902 B 1 
HETATM 19 N N3 A1AV2 . . . P 3 -26.782 -29.734 -22.2 1 34.92 0 N3 A1AV2 902 B 1 
HETATM 20 C C14 A1AV2 . . . P 3 -27.721 -29.089 -22.886 1 35.38 0 C14 A1AV2 902 B 1 
HETATM 21 C C15 A1AV2 . . . P 3 -28.431 -29.765 -23.985 1 37.62 0 C15 A1AV2 902 B 1 
HETATM 22 C C16 A1AV2 . . . P 3 -27.828 -30.75 -24.761 1 38.7 0 C16 A1AV2 902 B 1 
HETATM 23 C C17 A1AV2 . . . P 3 -28.538 -31.362 -25.775 1 41.55 0 C17 A1AV2 902 B 1 
HETATM 24 C C18 A1AV2 . . . P 3 -29.75 -29.438 -24.272 1 39.95 0 C18 A1AV2 902 B 1 
HETATM 25 N N4 A1AV2 . . . P 3 -30.452 -30.031 -25.258 1 44.1 0 N4 A1AV2 902 B 1 
HETATM 26 C C19 A1AV2 . . . P 3 -29.856 -30.977 -26.001 1 45.48 0 C19 A1AV2 902 B 1 
HETATM 27 N N5 A1AV2 . . . P 3 -30.651 -31.563 -27.009 1 52.67 0 N5 A1AV2 902 B 1 
HETATM 28 C C20 A1AV2 . . . P 3 -30.424 -32.718 -27.896 1 55.69 0 C20 A1AV2 902 B 1 
HETATM 29 C C21 A1AV2 . . . P 3 -32.111 -31.507 -27.198 1 57.2 0 C21 A1AV2 902 B 1 
HETATM 30 C C22 A1AV2 . . . P 3 -31.963 -32.729 -28.151 1 60.13 0 C22 A1AV2 902 B 1 
HETATM 31 C C23 A1AV2 . . . P 3 -32.524 -32.652 -29.59 1 64.1 0 C23 A1AV2 902 B 1 
HETATM 32 C C24 A1AV2 . . . P 3 -32.774 -34.023 -27.909 1 66.38 0 C24 A1AV2 902 B 1 
HETATM 33 N N6 A1AV2 . . . P 3 -33.284 -33.91 -29.312 1 68.99 0 N6 A1AV2 902 B 1 
HETATM 34 S S1 A1AV2 . . . P 3 -33.275 -35.168 -30.35 1 70.34 0 S1 A1AV2 902 B 1 
HETATM 35 C C25 A1AV2 . . . P 3 -31.608 -35.611 -30.693 1 71.03 0 C25 A1AV2 902 B 1 
HETATM 36 O O2 A1AV2 . . . P 3 -33.863 -36.284 -29.67 1 71.11 0 O2 A1AV2 902 B 1 
HETATM 37 O O3 A1AV2 . . . P 3 -33.873 -34.699 -31.564 1 67.52 0 O3 A1AV2 902 B 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           267 
_model_server_stats.encode_time_ms          14 
_model_server_stats.element_count           37 
#