data_9CD5 # _model_server_result.job_id wnhMLvS-mSyuoPQIyGWdeA _model_server_result.datetime_utc '2024-11-16 04:41:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9cd5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":903}' # _entry.id 9CD5 # _exptl.entry_id 9CD5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 559.467 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3P)-5-[(1R)-1-(3,5-dichloropyridin-4-yl)ethoxy]-3-{6-[6-(methanesulfonyl)-2,6-diazaspiro[3.3]heptan-2-yl]pyridin-3-yl}-1H-indazole _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.185 _cell.angle_gamma 90 _cell.entry_id 9CD5 _cell.length_a 206.03 _cell.length_b 57.614 _cell.length_c 65.694 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9CD5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,U 1 1 B,O,P,Q,R,S,T,V 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 P N N # _chem_comp.formula 'C25 H24 Cl2 N6 O3 S' _chem_comp.formula_weight 559.467 _chem_comp.id A1AV2 _chem_comp.mon_nstd_flag . _chem_comp.name (3P)-5-[(1R)-1-(3,5-dichloropyridin-4-yl)ethoxy]-3-{6-[6-(methanesulfonyl)-2,6-diazaspiro[3.3]heptan-2-yl]pyridin-3-yl}-1H-indazole _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 A1AV2 sing 1 n n C2 C3 A1AV2 sing 2 n n C2 O1 A1AV2 sing 3 n n C3 C4 A1AV2 doub 4 n y C3 C7 A1AV2 sing 5 n y C4 CL1 A1AV2 sing 6 n n C4 C5 A1AV2 sing 7 n y C5 N1 A1AV2 doub 8 n y N1 C6 A1AV2 sing 9 n y C6 C7 A1AV2 doub 10 n y C7 CL2 A1AV2 sing 11 n n O1 C8 A1AV2 sing 12 n n C8 C9 A1AV2 doub 13 n y C8 C11 A1AV2 sing 14 n y C9 C10 A1AV2 sing 15 n y C10 C13 A1AV2 doub 16 n y C11 C12 A1AV2 doub 17 n y C12 C13 A1AV2 sing 18 n y C12 C14 A1AV2 sing 19 n y C13 N2 A1AV2 sing 20 n y N2 N3 A1AV2 sing 21 n y N3 C14 A1AV2 doub 22 n y C14 C15 A1AV2 sing 23 n n C15 C16 A1AV2 doub 24 n y C15 C18 A1AV2 sing 25 n y C16 C17 A1AV2 sing 26 n y C17 C19 A1AV2 doub 27 n y C18 N4 A1AV2 doub 28 n y N4 C19 A1AV2 sing 29 n y C19 N5 A1AV2 sing 30 n n N5 C20 A1AV2 sing 31 n n N5 C21 A1AV2 sing 32 n n C20 C22 A1AV2 sing 33 n n C21 C22 A1AV2 sing 34 n n C22 C23 A1AV2 sing 35 n n C22 C24 A1AV2 sing 36 n n C23 N6 A1AV2 sing 37 n n C24 N6 A1AV2 sing 38 n n N6 S1 A1AV2 sing 39 n n S1 C25 A1AV2 sing 40 n n S1 O2 A1AV2 doub 41 n n S1 O3 A1AV2 doub 42 n n C1 H2 A1AV2 sing 43 n n C1 H1 A1AV2 sing 44 n n C1 H3 A1AV2 sing 45 n n C2 H4 A1AV2 sing 46 n n C5 H5 A1AV2 sing 47 n n C6 H6 A1AV2 sing 48 n n C10 H8 A1AV2 sing 49 n n C9 H7 A1AV2 sing 50 n n C11 H9 A1AV2 sing 51 n n N2 H10 A1AV2 sing 52 n n C16 H11 A1AV2 sing 53 n n C17 H12 A1AV2 sing 54 n n C18 H13 A1AV2 sing 55 n n C20 H14 A1AV2 sing 56 n n C20 H15 A1AV2 sing 57 n n C21 H17 A1AV2 sing 58 n n C21 H16 A1AV2 sing 59 n n C23 H18 A1AV2 sing 60 n n C23 H19 A1AV2 sing 61 n n C24 H21 A1AV2 sing 62 n n C24 H20 A1AV2 sing 63 n n C25 H22 A1AV2 sing 64 n n C25 H23 A1AV2 sing 65 n n C25 H24 A1AV2 sing 66 n n # _atom_sites.entry_id 9CD5 _atom_sites.fract_transf_matrix[1][1] 0.004854 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001501 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017357 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015933 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 901 901 EDO EDO . D 2 EDO A 1 902 1001 EDO EDO . E 3 A1AV2 A 1 903 1002 A1AV2 300 . F 4 SO4 A 1 904 1 SO4 SO4 . G 4 SO4 A 1 905 2 SO4 SO4 . H 4 SO4 A 1 906 4 SO4 SO4 . I 4 SO4 A 1 907 5 SO4 SO4 . J 4 SO4 A 1 908 6 SO4 SO4 . K 4 SO4 A 1 909 7 SO4 SO4 . L 4 SO4 A 1 910 8 SO4 SO4 . M 4 SO4 A 1 911 9 SO4 SO4 . N 4 SO4 A 1 912 12 SO4 SO4 . O 2 EDO B 1 901 901 EDO EDO . P 3 A1AV2 B 1 902 902 A1AV2 300 . Q 4 SO4 B 1 903 3 SO4 SO4 . R 4 SO4 B 1 904 10 SO4 SO4 . S 4 SO4 B 1 905 11 SO4 SO4 . T 4 SO4 B 1 906 13 SO4 SO4 . U 5 HOH A 1 1001 73 HOH HOH . U 5 HOH A 2 1002 3 HOH HOH . U 5 HOH A 3 1003 17 HOH HOH . U 5 HOH A 4 1004 11 HOH HOH . U 5 HOH A 5 1005 69 HOH HOH . U 5 HOH A 6 1006 59 HOH HOH . U 5 HOH A 7 1007 48 HOH HOH . U 5 HOH A 8 1008 22 HOH HOH . U 5 HOH A 9 1009 53 HOH HOH . U 5 HOH A 10 1010 60 HOH HOH . U 5 HOH A 11 1011 90 HOH HOH . U 5 HOH A 12 1012 79 HOH HOH . U 5 HOH A 13 1013 21 HOH HOH . U 5 HOH A 14 1014 100 HOH HOH . U 5 HOH A 15 1015 52 HOH HOH . U 5 HOH A 16 1016 46 HOH HOH . U 5 HOH A 17 1017 76 HOH HOH . U 5 HOH A 18 1018 50 HOH HOH . U 5 HOH A 19 1019 58 HOH HOH . U 5 HOH A 20 1020 7 HOH HOH . U 5 HOH A 21 1021 78 HOH HOH . U 5 HOH A 22 1022 104 HOH HOH . U 5 HOH A 23 1023 19 HOH HOH . U 5 HOH A 24 1024 6 HOH HOH . U 5 HOH A 25 1025 45 HOH HOH . U 5 HOH A 26 1026 105 HOH HOH . U 5 HOH A 27 1027 72 HOH HOH . U 5 HOH A 28 1028 65 HOH HOH . U 5 HOH A 29 1029 74 HOH HOH . U 5 HOH A 30 1030 88 HOH HOH . U 5 HOH A 31 1031 103 HOH HOH . U 5 HOH A 32 1032 96 HOH HOH . V 5 HOH B 1 1001 32 HOH HOH . V 5 HOH B 2 1002 57 HOH HOH . V 5 HOH B 3 1003 63 HOH HOH . V 5 HOH B 4 1004 23 HOH HOH . V 5 HOH B 5 1005 62 HOH HOH . V 5 HOH B 6 1006 15 HOH HOH . V 5 HOH B 7 1007 44 HOH HOH . V 5 HOH B 8 1008 18 HOH HOH . V 5 HOH B 9 1009 8 HOH HOH . V 5 HOH B 10 1010 34 HOH HOH . V 5 HOH B 11 1011 82 HOH HOH . V 5 HOH B 12 1012 61 HOH HOH . V 5 HOH B 13 1013 30 HOH HOH . V 5 HOH B 14 1014 101 HOH HOH . V 5 HOH B 15 1015 42 HOH HOH . V 5 HOH B 16 1016 36 HOH HOH . V 5 HOH B 17 1017 33 HOH HOH . V 5 HOH B 18 1018 39 HOH HOH . V 5 HOH B 19 1019 83 HOH HOH . V 5 HOH B 20 1020 93 HOH HOH . V 5 HOH B 21 1021 25 HOH HOH . V 5 HOH B 22 1022 81 HOH HOH . V 5 HOH B 23 1023 35 HOH HOH . V 5 HOH B 24 1024 38 HOH HOH . V 5 HOH B 25 1025 87 HOH HOH . V 5 HOH B 26 1026 106 HOH HOH . V 5 HOH B 27 1027 28 HOH HOH . V 5 HOH B 28 1028 66 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 A1AV2 . . . E 3 -18.731 6.428 13.097 1 39.35 0 C1 A1AV2 903 A 1 HETATM 2 C C2 A1AV2 . . . E 3 -18.488 5.18 12.274 1 40.61 0 C2 A1AV2 903 A 1 HETATM 3 C C3 A1AV2 . . . E 3 -19.78 4.433 12.031 1 44.66 0 C3 A1AV2 903 A 1 HETATM 4 C C4 A1AV2 . . . E 3 -20.391 3.681 13.034 1 43.98 0 C4 A1AV2 903 A 1 HETATM 5 C C5 A1AV2 . . . E 3 -21.565 3.006 12.771 1 42.28 0 C5 A1AV2 903 A 1 HETATM 6 C C6 A1AV2 . . . E 3 -21.596 3.744 10.611 1 47.73 0 C6 A1AV2 903 A 1 HETATM 7 C C10 A1AV2 . . . E 3 -15.261 1.57 12.817 1 34.25 0 C10 A1AV2 903 A 1 HETATM 8 C C13 A1AV2 . . . E 3 -15.568 1.075 11.545 1 32.67 0 C13 A1AV2 903 A 1 HETATM 9 CL CL1 A1AV2 . . . E 3 -19.7 3.564 14.626 1 48.45 0 CL1 A1AV2 903 A 1 HETATM 10 N N1 A1AV2 . . . E 3 -22.165 3.034 11.583 1 43.34 0 N1 A1AV2 903 A 1 HETATM 11 C C7 A1AV2 . . . E 3 -20.424 4.449 10.792 1 50.51 0 C7 A1AV2 903 A 1 HETATM 12 CL CL2 A1AV2 . . . E 3 -19.783 5.34 9.442 1 66.53 0 CL2 A1AV2 903 A 1 HETATM 13 O O1 A1AV2 . . . E 3 -17.506 4.421 13.022 1 38.93 0 O1 A1AV2 903 A 1 HETATM 14 C C8 A1AV2 . . . E 3 -16.906 3.32 12.458 1 36.36 0 C8 A1AV2 903 A 1 HETATM 15 C C9 A1AV2 . . . E 3 -15.939 2.686 13.257 1 35.57 0 C9 A1AV2 903 A 1 HETATM 16 C C11 A1AV2 . . . E 3 -17.211 2.825 11.191 1 35.26 0 C11 A1AV2 903 A 1 HETATM 17 C C12 A1AV2 . . . E 3 -16.536 1.687 10.73 1 34.55 0 C12 A1AV2 903 A 1 HETATM 18 N N2 A1AV2 . . . E 3 -15.093 0.01 10.833 1 31.41 0 N2 A1AV2 903 A 1 HETATM 19 N N3 A1AV2 . . . E 3 -15.701 -0.084 9.625 1 32.24 0 N3 A1AV2 903 A 1 HETATM 20 C C14 A1AV2 . . . E 3 -16.574 0.915 9.526 1 35.74 0 C14 A1AV2 903 A 1 HETATM 21 C C15 A1AV2 . . . E 3 -17.389 1.056 8.303 1 40.4 0 C15 A1AV2 903 A 1 HETATM 22 C C16 A1AV2 . . . E 3 -16.961 0.562 7.076 1 44.46 0 C16 A1AV2 903 A 1 HETATM 23 C C17 A1AV2 . . . E 3 -17.747 0.71 5.949 1 47.26 0 C17 A1AV2 903 A 1 HETATM 24 C C18 A1AV2 . . . E 3 -18.625 1.691 8.333 1 44.53 0 C18 A1AV2 903 A 1 HETATM 25 N N4 A1AV2 . . . E 3 -19.403 1.838 7.238 1 48.03 0 N4 A1AV2 903 A 1 HETATM 26 C C19 A1AV2 . . . E 3 -18.968 1.364 6.061 1 51.67 0 C19 A1AV2 903 A 1 HETATM 27 N N5 A1AV2 . . . E 3 -19.824 1.537 4.948 1 62.55 0 N5 A1AV2 903 A 1 HETATM 28 C C20 A1AV2 . . . E 3 -19.567 1.418 3.502 1 69.31 0 C20 A1AV2 903 A 1 HETATM 29 C C21 A1AV2 . . . E 3 -21.275 1.296 4.862 1 68.66 0 C21 A1AV2 903 A 1 HETATM 30 C C22 A1AV2 . . . E 3 -21.093 1.145 3.327 1 76.09 0 C22 A1AV2 903 A 1 HETATM 31 C C23 A1AV2 . . . E 3 -21.969 1.996 2.379 1 83.45 0 C23 A1AV2 903 A 1 HETATM 32 C C24 A1AV2 . . . E 3 -21.55 -0.138 2.591 1 80.95 0 C24 A1AV2 903 A 1 HETATM 33 N N6 A1AV2 . . . E 3 -22.372 0.73 1.69 1 87.79 0 N6 A1AV2 903 A 1 HETATM 34 S S1 A1AV2 . . . E 3 -22.323 0.612 0.065 1 94.83 0 S1 A1AV2 903 A 1 HETATM 35 C C25 A1AV2 . . . E 3 -20.714 1.055 -0.488 1 93.36 0 C25 A1AV2 903 A 1 HETATM 36 O O2 A1AV2 . . . E 3 -22.515 -0.765 -0.284 1 88.95 0 O2 A1AV2 903 A 1 HETATM 37 O O3 A1AV2 . . . E 3 -23.237 1.592 -0.442 1 88.01 0 O3 A1AV2 903 A 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 37 #