data_9CD7 # _model_server_result.job_id GwVC3YXrANkVQTk17kKtDg _model_server_result.datetime_utc '2024-11-29 03:40:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9cd7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":801}' # _entry.id 9CD7 # _exptl.entry_id 9CD7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 559.467 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3P)-5-[(1R)-1-(3,5-dichloropyridin-4-yl)ethoxy]-3-{6-[6-(methanesulfonyl)-2,6-diazaspiro[3.3]heptan-2-yl]pyridin-3-yl}-1H-indazole _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 127.452 _cell.angle_gamma 90 _cell.entry_id 9CD7 _cell.length_a 180.686 _cell.length_b 55.588 _cell.length_c 138.668 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9CD7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,AA 1 1 B,I,J,K,L,M,N,O,P,Q,BA 2 1 C,R,S,T,U,V,W,X,Y,Z,CA 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 I N N ? 2 R N N # _chem_comp.formula 'C25 H24 Cl2 N6 O3 S' _chem_comp.formula_weight 559.467 _chem_comp.id A1AV2 _chem_comp.mon_nstd_flag . _chem_comp.name (3P)-5-[(1R)-1-(3,5-dichloropyridin-4-yl)ethoxy]-3-{6-[6-(methanesulfonyl)-2,6-diazaspiro[3.3]heptan-2-yl]pyridin-3-yl}-1H-indazole _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 A1AV2 sing 1 n n C2 C3 A1AV2 sing 2 n n C2 O1 A1AV2 sing 3 n n C3 C4 A1AV2 doub 4 n y C3 C7 A1AV2 sing 5 n y C4 CL1 A1AV2 sing 6 n n C4 C5 A1AV2 sing 7 n y C5 N1 A1AV2 doub 8 n y N1 C6 A1AV2 sing 9 n y C6 C7 A1AV2 doub 10 n y C7 CL2 A1AV2 sing 11 n n O1 C8 A1AV2 sing 12 n n C8 C9 A1AV2 doub 13 n y C8 C11 A1AV2 sing 14 n y C9 C10 A1AV2 sing 15 n y C10 C13 A1AV2 doub 16 n y C11 C12 A1AV2 doub 17 n y C12 C13 A1AV2 sing 18 n y C12 C14 A1AV2 sing 19 n y C13 N2 A1AV2 sing 20 n y N2 N3 A1AV2 sing 21 n y N3 C14 A1AV2 doub 22 n y C14 C15 A1AV2 sing 23 n n C15 C16 A1AV2 doub 24 n y C15 C18 A1AV2 sing 25 n y C16 C17 A1AV2 sing 26 n y C17 C19 A1AV2 doub 27 n y C18 N4 A1AV2 doub 28 n y N4 C19 A1AV2 sing 29 n y C19 N5 A1AV2 sing 30 n n N5 C20 A1AV2 sing 31 n n N5 C21 A1AV2 sing 32 n n C20 C22 A1AV2 sing 33 n n C21 C22 A1AV2 sing 34 n n C22 C23 A1AV2 sing 35 n n C22 C24 A1AV2 sing 36 n n C23 N6 A1AV2 sing 37 n n C24 N6 A1AV2 sing 38 n n N6 S1 A1AV2 sing 39 n n S1 C25 A1AV2 sing 40 n n S1 O2 A1AV2 doub 41 n n S1 O3 A1AV2 doub 42 n n C1 H2 A1AV2 sing 43 n n C1 H1 A1AV2 sing 44 n n C1 H3 A1AV2 sing 45 n n C2 H4 A1AV2 sing 46 n n C5 H5 A1AV2 sing 47 n n C6 H6 A1AV2 sing 48 n n C10 H8 A1AV2 sing 49 n n C9 H7 A1AV2 sing 50 n n C11 H9 A1AV2 sing 51 n n N2 H10 A1AV2 sing 52 n n C16 H11 A1AV2 sing 53 n n C17 H12 A1AV2 sing 54 n n C18 H13 A1AV2 sing 55 n n C20 H14 A1AV2 sing 56 n n C20 H15 A1AV2 sing 57 n n C21 H17 A1AV2 sing 58 n n C21 H16 A1AV2 sing 59 n n C23 H18 A1AV2 sing 60 n n C23 H19 A1AV2 sing 61 n n C24 H21 A1AV2 sing 62 n n C24 H20 A1AV2 sing 63 n n C25 H22 A1AV2 sing 64 n n C25 H23 A1AV2 sing 65 n n C25 H24 A1AV2 sing 66 n n # _atom_sites.entry_id 9CD7 _atom_sites.fract_transf_matrix[1][1] 0.005534 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004239 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017989 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009084 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 A1AV2 A 1 801 800 A1AV2 300 . E 3 GOL A 1 802 802 GOL GOL . F 3 GOL A 1 803 803 GOL GOL . G 3 GOL A 1 804 804 GOL GOL . H 3 GOL A 1 805 805 GOL GOL . I 2 A1AV2 B 1 801 800 A1AV2 300 . J 3 GOL B 1 802 802 GOL GOL . K 3 GOL B 1 803 803 GOL GOL . L 3 GOL B 1 804 804 GOL GOL . M 3 GOL B 1 805 805 GOL GOL . N 3 GOL B 1 806 806 GOL GOL . O 3 GOL B 1 807 807 GOL GOL . P 4 SO4 B 1 808 1 SO4 SO4 . Q 4 SO4 B 1 809 3 SO4 SO4 . R 2 A1AV2 C 1 801 800 A1AV2 300 . S 3 GOL C 1 802 802 GOL GOL . T 3 GOL C 1 803 803 GOL GOL . U 3 GOL C 1 804 804 GOL GOL . V 3 GOL C 1 805 805 GOL GOL . W 3 GOL C 1 806 806 GOL GOL . X 3 GOL C 1 807 807 GOL GOL . Y 4 SO4 C 1 808 2 SO4 SO4 . Z 4 SO4 C 1 809 4 SO4 SO4 . AA 5 HOH A 1 901 6 HOH HOH . AA 5 HOH A 2 902 129 HOH HOH . AA 5 HOH A 3 903 119 HOH HOH . AA 5 HOH A 4 904 123 HOH HOH . AA 5 HOH A 5 905 62 HOH HOH . AA 5 HOH A 6 906 65 HOH HOH . AA 5 HOH A 7 907 10 HOH HOH . AA 5 HOH A 8 908 33 HOH HOH . AA 5 HOH A 9 909 16 HOH HOH . AA 5 HOH A 10 910 20 HOH HOH . AA 5 HOH A 11 911 67 HOH HOH . AA 5 HOH A 12 912 15 HOH HOH . AA 5 HOH A 13 913 118 HOH HOH . AA 5 HOH A 14 914 70 HOH HOH . AA 5 HOH A 15 915 46 HOH HOH . AA 5 HOH A 16 916 128 HOH HOH . AA 5 HOH A 17 917 127 HOH HOH . AA 5 HOH A 18 918 80 HOH HOH . AA 5 HOH A 19 919 115 HOH HOH . AA 5 HOH A 20 920 91 HOH HOH . AA 5 HOH A 21 921 9 HOH HOH . AA 5 HOH A 22 922 112 HOH HOH . AA 5 HOH A 23 923 66 HOH HOH . AA 5 HOH A 24 924 17 HOH HOH . AA 5 HOH A 25 925 78 HOH HOH . AA 5 HOH A 26 926 114 HOH HOH . AA 5 HOH A 27 927 53 HOH HOH . AA 5 HOH A 28 928 42 HOH HOH . AA 5 HOH A 29 929 19 HOH HOH . AA 5 HOH A 30 930 25 HOH HOH . AA 5 HOH A 31 931 51 HOH HOH . AA 5 HOH A 32 932 63 HOH HOH . AA 5 HOH A 33 933 18 HOH HOH . AA 5 HOH A 34 934 22 HOH HOH . AA 5 HOH A 35 935 47 HOH HOH . AA 5 HOH A 36 936 48 HOH HOH . AA 5 HOH A 37 937 31 HOH HOH . AA 5 HOH A 38 938 26 HOH HOH . AA 5 HOH A 39 939 64 HOH HOH . AA 5 HOH A 40 940 106 HOH HOH . AA 5 HOH A 41 941 50 HOH HOH . AA 5 HOH A 42 942 14 HOH HOH . AA 5 HOH A 43 943 43 HOH HOH . AA 5 HOH A 44 944 49 HOH HOH . AA 5 HOH A 45 945 116 HOH HOH . AA 5 HOH A 46 946 12 HOH HOH . AA 5 HOH A 47 947 79 HOH HOH . AA 5 HOH A 48 948 68 HOH HOH . AA 5 HOH A 49 949 28 HOH HOH . AA 5 HOH A 50 950 11 HOH HOH . AA 5 HOH A 51 951 69 HOH HOH . AA 5 HOH A 52 952 45 HOH HOH . AA 5 HOH A 53 953 117 HOH HOH . AA 5 HOH A 54 954 29 HOH HOH . AA 5 HOH A 55 955 113 HOH HOH . BA 5 HOH B 1 901 96 HOH HOH . BA 5 HOH B 2 902 81 HOH HOH . BA 5 HOH B 3 903 95 HOH HOH . BA 5 HOH B 4 904 89 HOH HOH . BA 5 HOH B 5 905 55 HOH HOH . BA 5 HOH B 6 906 99 HOH HOH . BA 5 HOH B 7 907 74 HOH HOH . BA 5 HOH B 8 908 44 HOH HOH . BA 5 HOH B 9 909 92 HOH HOH . BA 5 HOH B 10 910 87 HOH HOH . BA 5 HOH B 11 911 85 HOH HOH . BA 5 HOH B 12 912 5 HOH HOH . BA 5 HOH B 13 913 34 HOH HOH . BA 5 HOH B 14 914 103 HOH HOH . BA 5 HOH B 15 915 8 HOH HOH . BA 5 HOH B 16 916 86 HOH HOH . BA 5 HOH B 17 917 32 HOH HOH . BA 5 HOH B 18 918 97 HOH HOH . BA 5 HOH B 19 919 3 HOH HOH . BA 5 HOH B 20 920 124 HOH HOH . BA 5 HOH B 21 921 122 HOH HOH . BA 5 HOH B 22 922 30 HOH HOH . BA 5 HOH B 23 923 21 HOH HOH . BA 5 HOH B 24 924 72 HOH HOH . BA 5 HOH B 25 925 88 HOH HOH . BA 5 HOH B 26 926 84 HOH HOH . BA 5 HOH B 27 927 93 HOH HOH . BA 5 HOH B 28 928 73 HOH HOH . BA 5 HOH B 29 929 2 HOH HOH . BA 5 HOH B 30 930 90 HOH HOH . BA 5 HOH B 31 931 98 HOH HOH . BA 5 HOH B 32 932 71 HOH HOH . BA 5 HOH B 33 933 60 HOH HOH . BA 5 HOH B 34 934 4 HOH HOH . BA 5 HOH B 35 935 54 HOH HOH . BA 5 HOH B 36 936 23 HOH HOH . BA 5 HOH B 37 937 121 HOH HOH . BA 5 HOH B 38 938 7 HOH HOH . BA 5 HOH B 39 939 102 HOH HOH . BA 5 HOH B 40 940 13 HOH HOH . BA 5 HOH B 41 941 24 HOH HOH . BA 5 HOH B 42 942 82 HOH HOH . BA 5 HOH B 43 943 94 HOH HOH . BA 5 HOH B 44 944 52 HOH HOH . BA 5 HOH B 45 945 126 HOH HOH . BA 5 HOH B 46 946 83 HOH HOH . CA 5 HOH C 1 901 120 HOH HOH . CA 5 HOH C 2 902 41 HOH HOH . CA 5 HOH C 3 903 108 HOH HOH . CA 5 HOH C 4 904 61 HOH HOH . CA 5 HOH C 5 905 36 HOH HOH . CA 5 HOH C 6 906 56 HOH HOH . CA 5 HOH C 7 907 125 HOH HOH . CA 5 HOH C 8 908 76 HOH HOH . CA 5 HOH C 9 909 75 HOH HOH . CA 5 HOH C 10 910 27 HOH HOH . CA 5 HOH C 11 911 109 HOH HOH . CA 5 HOH C 12 912 77 HOH HOH . CA 5 HOH C 13 913 35 HOH HOH . CA 5 HOH C 14 914 130 HOH HOH . CA 5 HOH C 15 915 105 HOH HOH . CA 5 HOH C 16 916 101 HOH HOH . CA 5 HOH C 17 917 104 HOH HOH . CA 5 HOH C 18 918 110 HOH HOH . CA 5 HOH C 19 919 1 HOH HOH . CA 5 HOH C 20 920 100 HOH HOH . CA 5 HOH C 21 921 107 HOH HOH . CA 5 HOH C 22 922 58 HOH HOH . CA 5 HOH C 23 923 38 HOH HOH . CA 5 HOH C 24 924 59 HOH HOH . CA 5 HOH C 25 925 57 HOH HOH . CA 5 HOH C 26 926 40 HOH HOH . CA 5 HOH C 27 927 37 HOH HOH . CA 5 HOH C 28 928 111 HOH HOH . CA 5 HOH C 29 929 39 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 A1AV2 . . . D 2 25.914 -11.805 9.071 1 49.27 0 C1 A1AV2 801 A 1 HETATM 2 C C2 A1AV2 . . . D 2 25.722 -11.091 7.752 1 48.07 0 C2 A1AV2 801 A 1 HETATM 3 C C3 A1AV2 . . . D 2 25.47 -9.615 7.952 1 46.02 0 C3 A1AV2 801 A 1 HETATM 4 C C4 A1AV2 . . . D 2 24.272 -9.096 8.437 1 46.35 0 C4 A1AV2 801 A 1 HETATM 5 C C5 A1AV2 . . . D 2 24.123 -7.734 8.587 1 46.22 0 C5 A1AV2 801 A 1 HETATM 6 C C6 A1AV2 . . . D 2 26.241 -7.345 7.828 1 44.26 0 C6 A1AV2 801 A 1 HETATM 7 C C10 A1AV2 . . . D 2 22.641 -12.03 4.119 1 46.15 0 C10 A1AV2 801 A 1 HETATM 8 C C13 A1AV2 . . . D 2 23.283 -11.109 3.287 1 40.57 0 C13 A1AV2 801 A 1 HETATM 9 CL CL1 A1AV2 . . . D 2 22.941 -10.132 8.857 1 49.46 0 CL1 A1AV2 801 A 1 HETATM 10 N N1 A1AV2 . . . D 2 25.09 -6.866 8.295 1 47.01 0 N1 A1AV2 801 A 1 HETATM 11 C C7 A1AV2 . . . D 2 26.467 -8.692 7.651 1 45.8 0 C7 A1AV2 801 A 1 HETATM 12 CL CL2 A1AV2 . . . D 2 28.009 -9.223 7.054 1 58.4 0 CL2 A1AV2 801 A 1 HETATM 13 O O1 A1AV2 . . . D 2 24.627 -11.794 7.126 1 48.81 0 O1 A1AV2 801 A 1 HETATM 14 C C8 A1AV2 . . . D 2 24.267 -11.492 5.839 1 46.26 0 C8 A1AV2 801 A 1 HETATM 15 C C9 A1AV2 . . . D 2 23.144 -12.206 5.388 1 47.81 0 C9 A1AV2 801 A 1 HETATM 16 C C11 A1AV2 . . . D 2 24.911 -10.573 5.011 1 43.57 0 C11 A1AV2 801 A 1 HETATM 17 C C12 A1AV2 . . . D 2 24.406 -10.38 3.719 1 42.88 0 C12 A1AV2 801 A 1 HETATM 18 N N2 A1AV2 . . . D 2 23.036 -10.707 2.009 1 36.99 0 N2 A1AV2 801 A 1 HETATM 19 N N3 A1AV2 . . . D 2 23.928 -9.77 1.61 1 39.25 0 N3 A1AV2 801 A 1 HETATM 20 C C14 A1AV2 . . . D 2 24.769 -9.552 2.615 1 41.65 0 C14 A1AV2 801 A 1 HETATM 21 C C15 A1AV2 . . . D 2 25.862 -8.579 2.457 1 46.4 0 C15 A1AV2 801 A 1 HETATM 22 C C16 A1AV2 . . . D 2 26.432 -8.318 1.215 1 42.94 0 C16 A1AV2 801 A 1 HETATM 23 C C17 A1AV2 . . . D 2 27.466 -7.411 1.107 1 46.02 0 C17 A1AV2 801 A 1 HETATM 24 C C18 A1AV2 . . . D 2 26.382 -7.907 3.559 1 48.77 0 C18 A1AV2 801 A 1 HETATM 25 N N4 A1AV2 . . . D 2 27.398 -7.02 3.464 1 49.9 0 N4 A1AV2 801 A 1 HETATM 26 C C19 A1AV2 . . . D 2 27.937 -6.783 2.257 1 48.5 0 C19 A1AV2 801 A 1 HETATM 27 N N5 A1AV2 . . . D 2 28.982 -5.839 2.208 1 52.23 0 N5 A1AV2 801 A 1 HETATM 28 C C20 A1AV2 . . . D 2 29.554 -5.163 1.031 1 57.27 0 C20 A1AV2 801 A 1 HETATM 29 C C21 A1AV2 . . . D 2 29.247 -4.741 3.153 1 56.78 0 C21 A1AV2 801 A 1 HETATM 30 C C22 A1AV2 . . . D 2 29.855 -3.952 1.96 1 60.62 0 C22 A1AV2 801 A 1 HETATM 31 C C23 A1AV2 . . . D 2 31.3 -3.406 2.021 1 66.24 0 C23 A1AV2 801 A 1 HETATM 32 C C24 A1AV2 . . . D 2 29.327 -2.527 1.662 1 62.45 0 C24 A1AV2 801 A 1 HETATM 33 N N6 A1AV2 . . . D 2 30.741 -2.041 1.751 1 69.11 0 N6 A1AV2 801 A 1 HETATM 34 S S1 A1AV2 . . . D 2 31.368 -0.908 0.746 1 74.68 0 S1 A1AV2 801 A 1 HETATM 35 C C25 A1AV2 . . . D 2 32.927 -1.351 0.059 1 74.46 0 C25 A1AV2 801 A 1 HETATM 36 O O2 A1AV2 . . . D 2 30.452 -0.785 -0.349 1 85.09 0 O2 A1AV2 801 A 1 HETATM 37 O O3 A1AV2 . . . D 2 31.624 0.24 1.563 1 70.55 0 O3 A1AV2 801 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 37 #