data_9CDR
#
_model_server_result.job_id            masxHH8xIMuRAwyUSIyi0A 
_model_server_result.datetime_utc      '2024-11-21 09:50:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9cdr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":901}' 
#
_entry.id    9CDR 
#
_exptl.entry_id    9CDR 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9CDR 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9CDR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 77 A HIS 77 1_555 C FE HEM . A HEM 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.786 ? 
metalc ? metalc2 C FE HEM . A HEM 901 1_555 D O1 OXY . A OXY 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.794 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     9CDR 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 901 1135 HEM HEM . 
D 3 OXY A 1 902 1136 OXY OXY . 
E 2 HEM B 1 901 1135 HEM HEM . 
F 3 OXY B 1 902 1136 OXY OXY . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . C 2 202.517 217.59 292.351 1 168 ? CHA HEM 901 A 1 
HETATM 2 C CHB HEM . . . C 2 206.533 214.894 291.898 1 168 ? CHB HEM 901 A 1 
HETATM 3 C CHC HEM . . . C 2 204.969 211.999 295.457 1 168 ? CHC HEM 901 A 1 
HETATM 4 C CHD HEM . . . C 2 201.271 215.019 296.276 1 168 ? CHD HEM 901 A 1 
HETATM 5 C C1A HEM . . . C 2 203.756 217.146 291.94 1 168 ? C1A HEM 901 A 1 
HETATM 6 C C2A HEM . . . C 2 204.633 217.799 290.987 1 168 ? C2A HEM 901 A 1 
HETATM 7 C C3A HEM . . . C 2 205.737 217.055 290.864 1 168 ? C3A HEM 901 A 1 
HETATM 8 C C4A HEM . . . C 2 205.607 215.903 291.734 1 168 ? C4A HEM 901 A 1 
HETATM 9 C CMA HEM . . . C 2 206.946 217.365 289.955 1 168 ? CMA HEM 901 A 1 
HETATM 10 C CAA HEM . . . C 2 204.347 219.122 290.237 1 168 ? CAA HEM 901 A 1 
HETATM 11 C CBA HEM . . . C 2 203.084 219.007 289.386 1 168 ? CBA HEM 901 A 1 
HETATM 12 C CGA HEM . . . C 2 203.298 218.035 288.254 1 168 ? CGA HEM 901 A 1 
HETATM 13 O O1A HEM . . . C 2 202.316 217.745 287.523 1 168 ? O1A HEM 901 A 1 
HETATM 14 O O2A HEM . . . C 2 204.445 217.55 288.077 1 168 ? O2A HEM 901 A 1 
HETATM 15 C C1B HEM . . . C 2 206.415 213.821 292.754 1 168 ? C1B HEM 901 A 1 
HETATM 16 C C2B HEM . . . C 2 207.238 212.627 292.758 1 168 ? C2B HEM 901 A 1 
HETATM 17 C C3B HEM . . . C 2 206.806 211.831 293.749 1 168 ? C3B HEM 901 A 1 
HETATM 18 C C4B HEM . . . C 2 205.692 212.492 294.394 1 168 ? C4B HEM 901 A 1 
HETATM 19 C CMB HEM . . . C 2 208.404 212.37 291.779 1 168 ? CMB HEM 901 A 1 
HETATM 20 C CAB HEM . . . C 2 207.323 210.438 294.183 1 168 ? CAB HEM 901 A 1 
HETATM 21 C CBB HEM . . . C 2 208.157 209.715 293.43 1 168 ? CBB HEM 901 A 1 
HETATM 22 C C1C HEM . . . C 2 203.783 212.513 295.929 1 168 ? C1C HEM 901 A 1 
HETATM 23 C C2C HEM . . . C 2 202.848 211.833 296.799 1 168 ? C2C HEM 901 A 1 
HETATM 24 C C3C HEM . . . C 2 201.817 212.652 297.027 1 168 ? C3C HEM 901 A 1 
HETATM 25 C C4C HEM . . . C 2 202.069 213.896 296.315 1 168 ? C4C HEM 901 A 1 
HETATM 26 C CMC HEM . . . C 2 203.02 210.399 297.349 1 168 ? CMC HEM 901 A 1 
HETATM 27 C CAC HEM . . . C 2 200.6 212.305 297.917 1 168 ? CAC HEM 901 A 1 
HETATM 28 C CBC HEM . . . C 2 199.499 213.062 297.916 1 168 ? CBC HEM 901 A 1 
HETATM 29 C C1D HEM . . . C 2 201.243 215.943 295.254 1 168 ? C1D HEM 901 A 1 
HETATM 30 C C2D HEM . . . C 2 200.197 216.915 295.006 1 168 ? C2D HEM 901 A 1 
HETATM 31 C C3D HEM . . . C 2 200.536 217.621 293.919 1 168 ? C3D HEM 901 A 1 
HETATM 32 C C4D HEM . . . C 2 201.815 217.126 293.445 1 168 ? C4D HEM 901 A 1 
HETATM 33 C CMD HEM . . . C 2 198.921 217.072 295.863 1 168 ? CMD HEM 901 A 1 
HETATM 34 C CAD HEM . . . C 2 199.727 218.773 293.278 1 168 ? CAD HEM 901 A 1 
HETATM 35 C CBD HEM . . . C 2 199.407 218.439 291.823 1 168 ? CBD HEM 901 A 1 
HETATM 36 C CGD HEM . . . C 2 198.57 219.537 291.224 1 168 ? CGD HEM 901 A 1 
HETATM 37 O O1D HEM . . . C 2 198.284 220.532 291.939 1 168 ? O1D HEM 901 A 1 
HETATM 38 O O2D HEM . . . C 2 198.19 219.419 290.031 1 168 ? O2D HEM 901 A 1 
HETATM 39 N NA HEM . . . C 2 204.385 215.993 292.375 1 168 ? NA HEM 901 A 1 
HETATM 40 N NB HEM . . . C 2 205.483 213.704 293.766 1 168 ? NB HEM 901 A 1 
HETATM 41 N NC HEM . . . C 2 203.277 213.768 295.654 1 168 ? NC HEM 901 A 1 
HETATM 42 N ND HEM . . . C 2 202.212 216.103 294.283 1 168 ? ND HEM 901 A 1 
HETATM 43 FE FE HEM . . . C 2 203.805 214.859 293.988 1 168 ? FE HEM 901 A 1 
HETATM 44 H HHB HEM . . . C 2 207.34 214.936 291.344 1 168 ? HHB HEM 901 A 1 
HETATM 45 H HHC HEM . . . C 2 205.269 211.149 295.841 1 168 ? HHC HEM 901 A 1 
HETATM 46 H HHD HEM . . . C 2 200.801 215.258 297.102 1 168 ? HHD HEM 901 A 1 
HETATM 47 H HMA HEM . . . C 2 207.304 218.25 290.179 1 168 ? HMA HEM 901 A 1 
HETATM 48 H HMAA HEM . . . C 2 207.641 216.688 290.092 1 168 ? HMAA HEM 901 A 1 
HETATM 49 H HMAB HEM . . . C 2 206.663 217.357 289.017 1 168 ? HMAB HEM 901 A 1 
HETATM 50 H HAA HEM . . . C 2 204.227 219.834 290.885 1 168 ? HAA HEM 901 A 1 
HETATM 51 H HAAA HEM . . . C 2 205.099 219.337 289.665 1 168 ? HAAA HEM 901 A 1 
HETATM 52 H HBA HEM . . . C 2 202.346 218.699 289.934 1 168 ? HBA HEM 901 A 1 
HETATM 53 H HBAA HEM . . . C 2 202.866 219.878 289.02 1 168 ? HBAA HEM 901 A 1 
HETATM 54 H HMB HEM . . . C 2 208.09 211.818 291.046 1 168 ? HMB HEM 901 A 1 
HETATM 55 H HMBA HEM . . . C 2 208.728 213.215 291.431 1 168 ? HMBA HEM 901 A 1 
HETATM 56 H HMBB HEM . . . C 2 209.124 211.913 292.24 1 168 ? HMBB HEM 901 A 1 
HETATM 57 H HAB HEM . . . C 2 207.043 210.085 295.031 1 168 ? HAB HEM 901 A 1 
HETATM 58 H HBB HEM . . . C 2 208.581 208.931 293.811 1 168 ? HBB HEM 901 A 1 
HETATM 59 H HBBA HEM . . . C 2 208.212 209.873 292.475 1 168 ? HBBA HEM 901 A 1 
HETATM 60 H HMC HEM . . . C 2 203.83 210.354 297.882 1 168 ? HMC HEM 901 A 1 
HETATM 61 H HMCA HEM . . . C 2 202.258 210.163 297.9 1 168 ? HMCA HEM 901 A 1 
HETATM 62 H HMCB HEM . . . C 2 203.087 209.776 296.608 1 168 ? HMCB HEM 901 A 1 
HETATM 63 H HAC HEM . . . C 2 200.675 211.594 298.556 1 168 ? HAC HEM 901 A 1 
HETATM 64 H HBC HEM . . . C 2 199.272 213.562 297.118 1 168 ? HBC HEM 901 A 1 
HETATM 65 H HBCA HEM . . . C 2 198.792 212.847 298.543 1 168 ? HBCA HEM 901 A 1 
HETATM 66 H HMD HEM . . . C 2 199.172 217.334 296.773 1 168 ? HMD HEM 901 A 1 
HETATM 67 H HMDA HEM . . . C 2 198.338 217.757 295.476 1 168 ? HMDA HEM 901 A 1 
HETATM 68 H HMDB HEM . . . C 2 198.442 216.218 295.891 1 168 ? HMDB HEM 901 A 1 
HETATM 69 H HAD HEM . . . C 2 198.901 218.904 293.765 1 168 ? HAD HEM 901 A 1 
HETATM 70 H HADA HEM . . . C 2 200.251 219.589 293.312 1 168 ? HADA HEM 901 A 1 
HETATM 71 H HBD HEM . . . C 2 200.228 218.355 291.316 1 168 ? HBD HEM 901 A 1 
HETATM 72 H HBDA HEM . . . C 2 198.918 217.602 291.784 1 168 ? HBDA HEM 901 A 1 
HETATM 73 H HHA HEM . . . C 2 202.225 218.451 291.987 1 168 ? HHA HEM 901 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    45 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           73 
#