data_9CF9 # _model_server_result.job_id 3aE4MZ7VudtEFI2w4MEwDQ _model_server_result.datetime_utc '2025-03-09 01:49:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9cf9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 9CF9 # _exptl.entry_id 9CF9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 438.519 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(2S)-1-{[(2S)-1-hydroxy-3-(pyridin-3-yl)propan-2-yl]amino}-4-methyl-1-oxopentan-2-yl]-4-methoxy-1H-indole-2-carboxamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.49 _cell.angle_gamma 90 _cell.entry_id 9CF9 _cell.length_a 44.789 _cell.length_b 54.05 _cell.length_c 114.868 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9CF9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 145 A CYS 145 1_555 C C29 A1AWA . A A1AWA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.738 ? covale ? covale2 B SG CYS 145 B CYS 145 1_555 D C29 A1AWA . B A1AWA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.741 ? # _chem_comp.formula 'C24 H30 N4 O4' _chem_comp.formula_weight 438.519 _chem_comp.id A1AWA _chem_comp.mon_nstd_flag . _chem_comp.name N-[(2S)-1-{[(2S)-1-hydroxy-3-(pyridin-3-yl)propan-2-yl]amino}-4-methyl-1-oxopentan-2-yl]-4-methoxy-1H-indole-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O02 C01 A1AWA sing 1 n n C03 O02 A1AWA sing 2 n n C04 C03 A1AWA doub 3 n y C05 C04 A1AWA sing 4 n y C06 C05 A1AWA doub 5 n y C07 C06 A1AWA sing 6 n y N08 C07 A1AWA sing 7 n y C09 N08 A1AWA sing 8 n y O11 C10 A1AWA doub 9 n n N12 C10 A1AWA sing 10 n n C13 N12 A1AWA sing 11 n n C15 C14 A1AWA sing 12 n n C16 C15 A1AWA sing 13 n n C17 C15 A1AWA sing 14 n n C14 C13 A1AWA sing 15 n n C18 C13 A1AWA sing 16 n n O19 C18 A1AWA doub 17 n n N20 C18 A1AWA sing 18 n n C21 N20 A1AWA sing 19 n n C23 C22 A1AWA sing 20 n n C24 C23 A1AWA doub 21 n y C25 C24 A1AWA sing 22 n y C26 C25 A1AWA doub 23 n y N27 C26 A1AWA sing 24 n y C28 N27 A1AWA doub 25 n y C22 C21 A1AWA sing 26 n n C29 C21 A1AWA sing 27 n n O30 C29 A1AWA sing 28 n n C10 C09 A1AWA sing 29 n n C31 C09 A1AWA doub 30 n y C32 C31 A1AWA sing 31 n y C03 C32 A1AWA sing 32 n y C07 C32 A1AWA doub 33 n y C23 C28 A1AWA sing 34 n y N12 H121 A1AWA sing 35 n n C13 H131 A1AWA sing 36 n n C15 H151 A1AWA sing 37 n n C17 H172 A1AWA sing 38 n n C17 H173 A1AWA sing 39 n n C17 H171 A1AWA sing 40 n n C21 H211 A1AWA sing 41 n n C22 H222 A1AWA sing 42 n n C22 H221 A1AWA sing 43 n n C24 H241 A1AWA sing 44 n n C26 H261 A1AWA sing 45 n n C28 H281 A1AWA sing 46 n n C01 H011 A1AWA sing 47 n n C01 H013 A1AWA sing 48 n n C01 H012 A1AWA sing 49 n n C04 H041 A1AWA sing 50 n n C05 H051 A1AWA sing 51 n n C06 H061 A1AWA sing 52 n n C14 H141 A1AWA sing 53 n n C14 H142 A1AWA sing 54 n n C16 H162 A1AWA sing 55 n n C16 H161 A1AWA sing 56 n n C16 H163 A1AWA sing 57 n n C25 H251 A1AWA sing 58 n n C29 H1 A1AWA sing 59 n n C29 H291 A1AWA sing 60 n n C31 H311 A1AWA sing 61 n n N08 H081 A1AWA sing 62 n n N20 H201 A1AWA sing 63 n n O30 H301 A1AWA sing 64 n n # _atom_sites.entry_id 9CF9 _atom_sites.fract_transf_matrix[1][1] 0.022327 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004134 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018501 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008854 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 A1AWA A 1 401 405 A1AWA LIG . D 2 A1AWA B 1 401 405 A1AWA LIG . E 3 HOH A 1 501 26 HOH HOH . E 3 HOH A 2 502 17 HOH HOH . E 3 HOH A 3 503 3 HOH HOH . E 3 HOH A 4 504 31 HOH HOH . E 3 HOH A 5 505 4 HOH HOH . E 3 HOH A 6 506 23 HOH HOH . E 3 HOH A 7 507 10 HOH HOH . E 3 HOH A 8 508 11 HOH HOH . E 3 HOH A 9 509 19 HOH HOH . E 3 HOH A 10 510 39 HOH HOH . E 3 HOH A 11 511 2 HOH HOH . E 3 HOH A 12 512 33 HOH HOH . E 3 HOH A 13 513 32 HOH HOH . E 3 HOH A 14 514 18 HOH HOH . E 3 HOH A 15 515 25 HOH HOH . E 3 HOH A 16 516 9 HOH HOH . E 3 HOH A 17 517 8 HOH HOH . E 3 HOH A 18 518 30 HOH HOH . E 3 HOH A 19 519 15 HOH HOH . E 3 HOH A 20 520 13 HOH HOH . E 3 HOH A 21 521 37 HOH HOH . E 3 HOH A 22 522 35 HOH HOH . E 3 HOH A 23 523 34 HOH HOH . E 3 HOH A 24 524 1 HOH HOH . E 3 HOH A 25 525 22 HOH HOH . E 3 HOH A 26 526 16 HOH HOH . E 3 HOH A 27 527 27 HOH HOH . E 3 HOH A 28 528 20 HOH HOH . E 3 HOH A 29 529 21 HOH HOH . E 3 HOH A 30 530 38 HOH HOH . E 3 HOH A 31 531 40 HOH HOH . E 3 HOH A 32 532 41 HOH HOH . F 3 HOH B 1 501 36 HOH HOH . F 3 HOH B 2 502 42 HOH HOH . F 3 HOH B 3 503 14 HOH HOH . F 3 HOH B 4 504 12 HOH HOH . F 3 HOH B 5 505 24 HOH HOH . F 3 HOH B 6 506 29 HOH HOH . F 3 HOH B 7 507 6 HOH HOH . F 3 HOH B 8 508 7 HOH HOH . F 3 HOH B 9 509 28 HOH HOH . F 3 HOH B 10 510 43 HOH HOH . F 3 HOH B 11 511 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 A1AWA . . . D 2 36.273 7.658 43.346 1 79.74 ? C10 A1AWA 401 B 1 HETATM 2 N N12 A1AWA . . . D 2 36.911 8.744 44.003 1 60.52 ? N12 A1AWA 401 B 1 HETATM 3 C C13 A1AWA . . . D 2 36.425 10.05 43.786 1 66.78 ? C13 A1AWA 401 B 1 HETATM 4 C C15 A1AWA . . . D 2 36.643 10.795 46.18 1 66.36 ? C15 A1AWA 401 B 1 HETATM 5 C C17 A1AWA . . . D 2 37.03 9.47 46.841 1 64.79 ? C17 A1AWA 401 B 1 HETATM 6 C C21 A1AWA . . . D 2 35.264 10.728 40.143 1 63.61 ? C21 A1AWA 401 B 1 HETATM 7 C C22 A1AWA . . . D 2 33.996 10.189 39.453 1 53.59 ? C22 A1AWA 401 B 1 HETATM 8 C C24 A1AWA . . . D 2 35.322 8.803 37.769 1 54.39 ? C24 A1AWA 401 B 1 HETATM 9 C C26 A1AWA . . . D 2 34.215 6.884 36.918 1 56.79 ? C26 A1AWA 401 B 1 HETATM 10 C C28 A1AWA . . . D 2 33.084 8.188 38.46 1 54.18 ? C28 A1AWA 401 B 1 HETATM 11 C C01 A1AWA . . . D 2 40.724 4.22 45.292 1 80.41 ? C01 A1AWA 401 B 1 HETATM 12 C C03 A1AWA . . . D 2 38.664 3.392 44.76 1 90.66 ? C03 A1AWA 401 B 1 HETATM 13 C C04 A1AWA . . . D 2 38.544 2.111 44.247 1 83.31 ? C04 A1AWA 401 B 1 HETATM 14 C C05 A1AWA . . . D 2 37.682 1.839 43.176 1 79.94 ? C05 A1AWA 401 B 1 HETATM 15 C C06 A1AWA . . . D 2 36.919 2.845 42.624 1 74 ? C06 A1AWA 401 B 1 HETATM 16 C C07 A1AWA . . . D 2 37.051 4.149 43.155 1 91.39 ? C07 A1AWA 401 B 1 HETATM 17 C C09 A1AWA . . . D 2 36.807 6.264 43.544 1 84.94 ? C09 A1AWA 401 B 1 HETATM 18 C C14 A1AWA . . . D 2 37.186 10.991 44.75 1 66.78 ? C14 A1AWA 401 B 1 HETATM 19 C C16 A1AWA . . . D 2 37.052 11.941 47.116 1 67.88 ? C16 A1AWA 401 B 1 HETATM 20 C C18 A1AWA . . . D 2 36.59 10.414 42.312 1 64.73 ? C18 A1AWA 401 B 1 HETATM 21 C C23 A1AWA . . . D 2 34.199 9.003 38.537 1 52.3 ? C23 A1AWA 401 B 1 HETATM 22 C C25 A1AWA . . . D 2 35.332 7.702 36.951 1 50.99 ? C25 A1AWA 401 B 1 HETATM 23 C C29 A1AWA . . . D 2 34.829 12.291 40.215 1 50.4 ? C29 A1AWA 401 B 1 HETATM 24 C C31 A1AWA . . . D 2 37.759 5.815 44.451 1 82 ? C31 A1AWA 401 B 1 HETATM 25 C C32 A1AWA . . . D 2 37.899 4.429 44.195 1 93.47 ? C32 A1AWA 401 B 1 HETATM 26 N N08 A1AWA . . . D 2 36.419 5.274 42.781 1 90.79 ? N08 A1AWA 401 B 1 HETATM 27 N N20 A1AWA . . . D 2 35.357 10.297 41.537 1 59.45 ? N20 A1AWA 401 B 1 HETATM 28 N N27 A1AWA . . . D 2 33.126 7.146 37.664 1 56.95 ? N27 A1AWA 401 B 1 HETATM 29 O O02 A1AWA . . . D 2 39.548 3.659 45.801 1 86.32 ? O02 A1AWA 401 B 1 HETATM 30 O O11 A1AWA . . . D 2 35.34 7.826 42.655 1 85.88 ? O11 A1AWA 401 B 1 HETATM 31 O O19 A1AWA . . . D 2 37.634 10.772 41.877 1 59.56 ? O19 A1AWA 401 B 1 HETATM 32 O O30 A1AWA . . . D 2 34.84 12.949 38.966 1 49.1 ? O30 A1AWA 401 B 1 HETATM 33 H H121 A1AWA . . . D 2 37.692 8.585 44.61 1 72.65 ? H121 A1AWA 401 B 1 HETATM 34 H H131 A1AWA . . . D 2 35.366 10.14 43.996 1 80.16 ? H131 A1AWA 401 B 1 HETATM 35 H H151 A1AWA . . . D 2 35.57 10.786 46.039 1 79.65 ? H151 A1AWA 401 B 1 HETATM 36 H H172 A1AWA . . . D 2 38.112 9.362 46.831 1 77.77 ? H172 A1AWA 401 B 1 HETATM 37 H H173 A1AWA . . . D 2 36.675 9.459 47.868 1 77.77 ? H173 A1AWA 401 B 1 HETATM 38 H H171 A1AWA . . . D 2 36.579 8.646 46.293 1 77.77 ? H171 A1AWA 401 B 1 HETATM 39 H H211 A1AWA . . . D 2 36.185 10.443 39.65 1 76.35 ? H211 A1AWA 401 B 1 HETATM 40 H H222 A1AWA . . . D 2 33.292 9.899 40.225 1 64.33 ? H222 A1AWA 401 B 1 HETATM 41 H H221 A1AWA . . . D 2 33.566 10.994 38.868 1 64.33 ? H221 A1AWA 401 B 1 HETATM 42 H H241 A1AWA . . . D 2 36.163 9.486 37.808 1 65.29 ? H241 A1AWA 401 B 1 HETATM 43 H H261 A1AWA . . . D 2 34.218 6.01 36.275 1 68.17 ? H261 A1AWA 401 B 1 HETATM 44 H H281 A1AWA . . . D 2 32.197 8.405 39.044 1 65.04 ? H281 A1AWA 401 B 1 HETATM 45 H H011 A1AWA . . . D 2 41.486 4.229 46.066 1 96.52 ? H011 A1AWA 401 B 1 HETATM 46 H H013 A1AWA . . . D 2 41.072 3.629 44.449 1 96.52 ? H013 A1AWA 401 B 1 HETATM 47 H H012 A1AWA . . . D 2 40.528 5.236 44.964 1 96.52 ? H012 A1AWA 401 B 1 HETATM 48 H H041 A1AWA . . . D 2 39.126 1.306 44.68 1 99.99 ? H041 A1AWA 401 B 1 HETATM 49 H H051 A1AWA . . . D 2 37.614 0.832 42.781 1 95.96 ? H051 A1AWA 401 B 1 HETATM 50 H H061 A1AWA . . . D 2 36.237 2.643 41.806 1 88.83 ? H061 A1AWA 401 B 1 HETATM 51 H H141 A1AWA . . . D 2 37.045 12.022 44.443 1 80.16 ? H141 A1AWA 401 B 1 HETATM 52 H H142 A1AWA . . . D 2 38.246 10.759 44.726 1 80.16 ? H142 A1AWA 401 B 1 HETATM 53 H H162 A1AWA . . . D 2 37.665 11.548 47.923 1 81.48 ? H162 A1AWA 401 B 1 HETATM 54 H H161 A1AWA . . . D 2 36.162 12.406 47.531 1 81.48 ? H161 A1AWA 401 B 1 HETATM 55 H H163 A1AWA . . . D 2 37.62 12.68 46.557 1 81.48 ? H163 A1AWA 401 B 1 HETATM 56 H H251 A1AWA . . . D 2 36.199 7.476 36.34 1 61.21 ? H251 A1AWA 401 B 1 HETATM 57 H H291 A1AWA . . . D 2 35.579 12.77 40.831 1 60.5 ? H291 A1AWA 401 B 1 HETATM 58 H H311 A1AWA . . . D 2 38.284 6.401 45.197 1 98.42 ? H311 A1AWA 401 B 1 HETATM 59 H H081 A1AWA . . . D 2 35.756 5.344 42.035 1 108.97 ? H081 A1AWA 401 B 1 HETATM 60 H H201 A1AWA . . . D 2 34.548 9.907 41.976 1 71.36 ? H201 A1AWA 401 B 1 HETATM 61 H H301 A1AWA . . . D 2 35.166 13.822 39.053 1 58.94 ? H301 A1AWA 401 B 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 45 _model_server_stats.query_time_ms 457 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 61 #