data_9CGL # _model_server_result.job_id yaS-WwdYporU4yOsbZ3TLA _model_server_result.datetime_utc '2024-12-22 01:11:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9cgl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1401}' # _entry.id 9CGL # _exptl.entry_id 9CGL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 299.3 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-{[(1R)-1-(6-nitro-2H-1,3-benzodioxol-5-yl)ethyl]sulfanyl}ethyl formate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9CGL _cell.length_a 59.124 _cell.length_b 105.858 _cell.length_c 114.533 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9CGL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HIS 139 A HIS 1195 1_555 A N DPP 140 A DPP 1196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C DPP 140 A DPP 1196 1_555 A N GLY 141 A GLY 1197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale3 A NG DPP 140 A DPP 1196 1_555 C C05 A1AWE . A A1AWE 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale4 B C HIS 139 B HIS 1195 1_555 B N DPP 140 B DPP 1196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 B C DPP 140 B DPP 1196 1_555 B N GLY 141 B GLY 1197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale6 B NG DPP 140 B DPP 1196 1_555 D C05 A1AWE . B A1AWE 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? # _chem_comp.formula 'C12 H13 N O6 S' _chem_comp.formula_weight 299.3 _chem_comp.id A1AWE _chem_comp.mon_nstd_flag . _chem_comp.name '2-{[(1R)-1-(6-nitro-2H-1,3-benzodioxol-5-yl)ethyl]sulfanyl}ethyl formate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C07 C08 A1AWE sing 1 n n C07 O06 A1AWE sing 2 n n C08 S09 A1AWE sing 3 n n O06 C05 A1AWE sing 4 n n C05 O24 A1AWE doub 5 n n S09 C10 A1AWE sing 6 n n C10 C12 A1AWE sing 7 n n C10 C11 A1AWE sing 8 n n O16 N14 A1AWE sing 9 n n C12 C23 A1AWE doub 10 n y C12 C13 A1AWE sing 11 n y C23 C22 A1AWE sing 12 n y N14 C13 A1AWE sing 13 n n N14 O15 A1AWE doub 14 n n C13 C17 A1AWE doub 15 n y C22 O21 A1AWE sing 16 n n C22 C18 A1AWE doub 17 n y C17 C18 A1AWE sing 18 n y O21 C20 A1AWE sing 19 n n C18 O19 A1AWE sing 20 n n C20 O19 A1AWE sing 21 n n C10 H1 A1AWE sing 22 n n C11 H2 A1AWE sing 23 n n C11 H3 A1AWE sing 24 n n C11 H4 A1AWE sing 25 n n C20 H5 A1AWE sing 26 n n C20 H6 A1AWE sing 27 n n C17 H7 A1AWE sing 28 n n C05 H8 A1AWE sing 29 n n C07 H9 A1AWE sing 30 n n C07 H10 A1AWE sing 31 n n C08 H11 A1AWE sing 32 n n C08 H12 A1AWE sing 33 n n C23 H13 A1AWE sing 34 n n # _atom_sites.entry_id 9CGL _atom_sites.fract_transf_matrix[1][1] 0.016914 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009447 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008731 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 A1AWE A 1 1401 1196 A1AWE INT . D 2 A1AWE B 1 1401 1196 A1AWE INT . E 3 HOH A 1 1501 86 HOH HOH . E 3 HOH A 2 1502 40 HOH HOH . E 3 HOH A 3 1503 134 HOH HOH . E 3 HOH A 4 1504 116 HOH HOH . E 3 HOH A 5 1505 22 HOH HOH . E 3 HOH A 6 1506 77 HOH HOH . E 3 HOH A 7 1507 27 HOH HOH . E 3 HOH A 8 1508 70 HOH HOH . E 3 HOH A 9 1509 9 HOH HOH . E 3 HOH A 10 1510 98 HOH HOH . E 3 HOH A 11 1511 165 HOH HOH . E 3 HOH A 12 1512 85 HOH HOH . E 3 HOH A 13 1513 91 HOH HOH . E 3 HOH A 14 1514 20 HOH HOH . E 3 HOH A 15 1515 113 HOH HOH . E 3 HOH A 16 1516 13 HOH HOH . E 3 HOH A 17 1517 39 HOH HOH . E 3 HOH A 18 1518 49 HOH HOH . E 3 HOH A 19 1519 128 HOH HOH . E 3 HOH A 20 1520 162 HOH HOH . E 3 HOH A 21 1521 146 HOH HOH . E 3 HOH A 22 1522 34 HOH HOH . E 3 HOH A 23 1523 32 HOH HOH . E 3 HOH A 24 1524 65 HOH HOH . E 3 HOH A 25 1525 111 HOH HOH . E 3 HOH A 26 1526 44 HOH HOH . E 3 HOH A 27 1527 96 HOH HOH . E 3 HOH A 28 1528 51 HOH HOH . E 3 HOH A 29 1529 29 HOH HOH . E 3 HOH A 30 1530 103 HOH HOH . E 3 HOH A 31 1531 118 HOH HOH . E 3 HOH A 32 1532 3 HOH HOH . E 3 HOH A 33 1533 102 HOH HOH . E 3 HOH A 34 1534 64 HOH HOH . E 3 HOH A 35 1535 173 HOH HOH . E 3 HOH A 36 1536 100 HOH HOH . E 3 HOH A 37 1537 45 HOH HOH . E 3 HOH A 38 1538 1 HOH HOH . E 3 HOH A 39 1539 12 HOH HOH . E 3 HOH A 40 1540 172 HOH HOH . E 3 HOH A 41 1541 16 HOH HOH . E 3 HOH A 42 1542 23 HOH HOH . E 3 HOH A 43 1543 47 HOH HOH . E 3 HOH A 44 1544 57 HOH HOH . E 3 HOH A 45 1545 11 HOH HOH . E 3 HOH A 46 1546 54 HOH HOH . E 3 HOH A 47 1547 95 HOH HOH . E 3 HOH A 48 1548 147 HOH HOH . E 3 HOH A 49 1549 144 HOH HOH . E 3 HOH A 50 1550 123 HOH HOH . E 3 HOH A 51 1551 84 HOH HOH . E 3 HOH A 52 1552 14 HOH HOH . E 3 HOH A 53 1553 154 HOH HOH . E 3 HOH A 54 1554 178 HOH HOH . E 3 HOH A 55 1555 56 HOH HOH . E 3 HOH A 56 1556 170 HOH HOH . E 3 HOH A 57 1557 68 HOH HOH . E 3 HOH A 58 1558 101 HOH HOH . E 3 HOH A 59 1559 108 HOH HOH . E 3 HOH A 60 1560 121 HOH HOH . E 3 HOH A 61 1561 126 HOH HOH . E 3 HOH A 62 1562 135 HOH HOH . E 3 HOH A 63 1563 149 HOH HOH . E 3 HOH A 64 1564 180 HOH HOH . E 3 HOH A 65 1565 72 HOH HOH . E 3 HOH A 66 1566 171 HOH HOH . E 3 HOH A 67 1567 99 HOH HOH . E 3 HOH A 68 1568 105 HOH HOH . E 3 HOH A 69 1569 120 HOH HOH . E 3 HOH A 70 1570 139 HOH HOH . E 3 HOH A 71 1571 159 HOH HOH . E 3 HOH A 72 1572 137 HOH HOH . E 3 HOH A 73 1573 15 HOH HOH . E 3 HOH A 74 1574 163 HOH HOH . E 3 HOH A 75 1575 161 HOH HOH . E 3 HOH A 76 1576 112 HOH HOH . E 3 HOH A 77 1577 119 HOH HOH . F 3 HOH B 1 1501 158 HOH HOH . F 3 HOH B 2 1502 35 HOH HOH . F 3 HOH B 3 1503 19 HOH HOH . F 3 HOH B 4 1504 61 HOH HOH . F 3 HOH B 5 1505 52 HOH HOH . F 3 HOH B 6 1506 136 HOH HOH . F 3 HOH B 7 1507 58 HOH HOH . F 3 HOH B 8 1508 2 HOH HOH . F 3 HOH B 9 1509 124 HOH HOH . F 3 HOH B 10 1510 43 HOH HOH . F 3 HOH B 11 1511 4 HOH HOH . F 3 HOH B 12 1512 88 HOH HOH . F 3 HOH B 13 1513 133 HOH HOH . F 3 HOH B 14 1514 138 HOH HOH . F 3 HOH B 15 1515 17 HOH HOH . F 3 HOH B 16 1516 155 HOH HOH . F 3 HOH B 17 1517 92 HOH HOH . F 3 HOH B 18 1518 78 HOH HOH . F 3 HOH B 19 1519 30 HOH HOH . F 3 HOH B 20 1520 66 HOH HOH . F 3 HOH B 21 1521 177 HOH HOH . F 3 HOH B 22 1522 97 HOH HOH . F 3 HOH B 23 1523 10 HOH HOH . F 3 HOH B 24 1524 33 HOH HOH . F 3 HOH B 25 1525 21 HOH HOH . F 3 HOH B 26 1526 26 HOH HOH . F 3 HOH B 27 1527 62 HOH HOH . F 3 HOH B 28 1528 67 HOH HOH . F 3 HOH B 29 1529 42 HOH HOH . F 3 HOH B 30 1530 107 HOH HOH . F 3 HOH B 31 1531 18 HOH HOH . F 3 HOH B 32 1532 157 HOH HOH . F 3 HOH B 33 1533 122 HOH HOH . F 3 HOH B 34 1534 129 HOH HOH . F 3 HOH B 35 1535 8 HOH HOH . F 3 HOH B 36 1536 6 HOH HOH . F 3 HOH B 37 1537 142 HOH HOH . F 3 HOH B 38 1538 38 HOH HOH . F 3 HOH B 39 1539 24 HOH HOH . F 3 HOH B 40 1540 74 HOH HOH . F 3 HOH B 41 1541 36 HOH HOH . F 3 HOH B 42 1542 75 HOH HOH . F 3 HOH B 43 1543 60 HOH HOH . F 3 HOH B 44 1544 110 HOH HOH . F 3 HOH B 45 1545 5 HOH HOH . F 3 HOH B 46 1546 82 HOH HOH . F 3 HOH B 47 1547 48 HOH HOH . F 3 HOH B 48 1548 141 HOH HOH . F 3 HOH B 49 1549 160 HOH HOH . F 3 HOH B 50 1550 145 HOH HOH . F 3 HOH B 51 1551 130 HOH HOH . F 3 HOH B 52 1552 152 HOH HOH . F 3 HOH B 53 1553 31 HOH HOH . F 3 HOH B 54 1554 71 HOH HOH . F 3 HOH B 55 1555 81 HOH HOH . F 3 HOH B 56 1556 46 HOH HOH . F 3 HOH B 57 1557 41 HOH HOH . F 3 HOH B 58 1558 175 HOH HOH . F 3 HOH B 59 1559 63 HOH HOH . F 3 HOH B 60 1560 90 HOH HOH . F 3 HOH B 61 1561 25 HOH HOH . F 3 HOH B 62 1562 94 HOH HOH . F 3 HOH B 63 1563 131 HOH HOH . F 3 HOH B 64 1564 53 HOH HOH . F 3 HOH B 65 1565 89 HOH HOH . F 3 HOH B 66 1566 143 HOH HOH . F 3 HOH B 67 1567 176 HOH HOH . F 3 HOH B 68 1568 79 HOH HOH . F 3 HOH B 69 1569 168 HOH HOH . F 3 HOH B 70 1570 87 HOH HOH . F 3 HOH B 71 1571 37 HOH HOH . F 3 HOH B 72 1572 174 HOH HOH . F 3 HOH B 73 1573 69 HOH HOH . F 3 HOH B 74 1574 83 HOH HOH . F 3 HOH B 75 1575 59 HOH HOH . F 3 HOH B 76 1576 76 HOH HOH . F 3 HOH B 77 1577 166 HOH HOH . F 3 HOH B 78 1578 140 HOH HOH . F 3 HOH B 79 1579 7 HOH HOH . F 3 HOH B 80 1580 50 HOH HOH . F 3 HOH B 81 1581 156 HOH HOH . F 3 HOH B 82 1582 55 HOH HOH . F 3 HOH B 83 1583 115 HOH HOH . F 3 HOH B 84 1584 132 HOH HOH . F 3 HOH B 85 1585 93 HOH HOH . F 3 HOH B 86 1586 148 HOH HOH . F 3 HOH B 87 1587 104 HOH HOH . F 3 HOH B 88 1588 169 HOH HOH . F 3 HOH B 89 1589 109 HOH HOH . F 3 HOH B 90 1590 167 HOH HOH . F 3 HOH B 91 1591 125 HOH HOH . F 3 HOH B 92 1592 80 HOH HOH . F 3 HOH B 93 1593 151 HOH HOH . F 3 HOH B 94 1594 153 HOH HOH . F 3 HOH B 95 1595 73 HOH HOH . F 3 HOH B 96 1596 179 HOH HOH . F 3 HOH B 97 1597 114 HOH HOH . F 3 HOH B 98 1598 127 HOH HOH . F 3 HOH B 99 1599 117 HOH HOH . F 3 HOH B 100 1600 28 HOH HOH . F 3 HOH B 101 1601 106 HOH HOH . F 3 HOH B 102 1602 150 HOH HOH . F 3 HOH B 103 1603 164 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 A1AWE . . . C 2 17.118 59.959 105.936 0.76 42.02 ? C10 A1AWE 1401 A 1 HETATM 2 C C11 A1AWE . . . C 2 17.251 58.686 106.776 0.76 30.81 ? C11 A1AWE 1401 A 1 HETATM 3 C C12 A1AWE . . . C 2 16.364 61.05 106.689 0.76 39.07 ? C12 A1AWE 1401 A 1 HETATM 4 C C18 A1AWE . . . C 2 15.14 63.206 108.081 0.76 41.01 ? C18 A1AWE 1401 A 1 HETATM 5 C C20 A1AWE . . . C 2 13.216 63.84 108.395 0.76 40.66 ? C20 A1AWE 1401 A 1 HETATM 6 C C13 A1AWE . . . C 2 17.009 62.054 107.197 0.76 40.52 ? C13 A1AWE 1401 A 1 HETATM 7 C C17 A1AWE . . . C 2 16.541 63.006 107.821 0.76 35.86 ? C17 A1AWE 1401 A 1 HETATM 8 C C05 A1AWE . . . C 2 13.893 62.789 103.741 0.76 28.66 ? C05 A1AWE 1401 A 1 HETATM 9 C C07 A1AWE . . . C 2 15.583 61.669 102.573 0.76 36.43 ? C07 A1AWE 1401 A 1 HETATM 10 C C08 A1AWE . . . C 2 16.677 60.707 103.035 0.76 40.12 ? C08 A1AWE 1401 A 1 HETATM 11 C C22 A1AWE . . . C 2 14.211 62.093 107.516 0.76 40.87 ? C22 A1AWE 1401 A 1 HETATM 12 C C23 A1AWE . . . C 2 14.966 60.835 106.698 0.76 35.52 ? C23 A1AWE 1401 A 1 HETATM 13 N N14 A1AWE . . . C 2 18.456 62.131 107.098 0.76 42.21 ? N14 A1AWE 1401 A 1 HETATM 14 O O06 A1AWE . . . C 2 15.27 62.604 103.579 0.76 32.46 ? O06 A1AWE 1401 A 1 HETATM 15 O O15 A1AWE . . . C 2 19.258 61.842 108.221 0.76 33.39 ? O15 A1AWE 1401 A 1 HETATM 16 O O16 A1AWE . . . C 2 18.958 62.467 106.087 0.76 38.93 ? O16 A1AWE 1401 A 1 HETATM 17 O O19 A1AWE . . . C 2 14.339 63.961 108.597 0.76 45.19 ? O19 A1AWE 1401 A 1 HETATM 18 O O21 A1AWE . . . C 2 12.743 62.668 107.997 0.76 51.14 ? O21 A1AWE 1401 A 1 HETATM 19 O O24 A1AWE . . . C 2 13.2 61.867 103.942 0.76 30.75 ? O24 A1AWE 1401 A 1 HETATM 20 S S09 A1AWE . . . C 2 16.116 59.685 104.432 0.76 75.97 ? S09 A1AWE 1401 A 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #