data_9CGN # _model_server_result.job_id 7NUNFdsMl1kDkZDyPHNK6Q _model_server_result.datetime_utc '2024-11-22 04:14:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9cgn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1401}' # _entry.id 9CGN # _exptl.entry_id 9CGN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.497 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S,4R,5S,6S,8R,12R,13R)-5,13-dihydroxy-2,4,6,8,12-pentamethyl-3,9-dioxopentadecanal _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9CGN _cell.length_a 58.04 _cell.length_b 105.18 _cell.length_c 114.58 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9CGN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HIS 139 A HIS 1195 1_555 A N DPP 140 A DPP 1196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C DPP 140 A DPP 1196 1_555 A N GLY 141 A GLY 1197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale3 A NG DPP 140 A DPP 1196 1_555 C C1 A1AWF . A A1AWF 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.466 ? covale ? covale4 B C HIS 139 B HIS 1195 1_555 B N DPP 140 B DPP 1196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale5 B C DPP 140 B DPP 1196 1_555 B N GLY 141 B GLY 1197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 B NG DPP 140 B DPP 1196 1_555 D C1 A1AWF . B A1AWF 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? # _chem_comp.formula 'C20 H36 O5' _chem_comp.formula_weight 356.497 _chem_comp.id A1AWF _chem_comp.mon_nstd_flag . _chem_comp.name (2S,4R,5S,6S,8R,12R,13R)-5,13-dihydroxy-2,4,6,8,12-pentamethyl-3,9-dioxopentadecanal _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C15 C14 A1AWF sing 1 n n C14 C13 A1AWF sing 2 n n C13 C12 A1AWF sing 3 n n C13 O13C A1AWF sing 4 n n C12 C12C A1AWF sing 5 n n C12 C11 A1AWF sing 6 n n C11 C10 A1AWF sing 7 n n O9C C9 A1AWF doub 8 n n C10 C9 A1AWF sing 9 n n O1C C1 A1AWF doub 10 n n C9 C8 A1AWF sing 11 n n C1 C2 A1AWF sing 12 n n C8C C8 A1AWF sing 13 n n C8 C7 A1AWF sing 14 n n C2 C2C A1AWF sing 15 n n C2 C3 A1AWF sing 16 n n C7 C6 A1AWF sing 17 n n C6 C6C A1AWF sing 18 n n C6 C5 A1AWF sing 19 n n C3 O3C A1AWF doub 20 n n C3 C4 A1AWF sing 21 n n C4 C5 A1AWF sing 22 n n C4 C4C A1AWF sing 23 n n C5 O5C A1AWF sing 24 n n C1 H1 A1AWF sing 25 n n C2 H2 A1AWF sing 26 n n C4 H3 A1AWF sing 27 n n C5 H4 A1AWF sing 28 n n C6 H5 A1AWF sing 29 n n C7 H6 A1AWF sing 30 n n C7 H7 A1AWF sing 31 n n C8 H8 A1AWF sing 32 n n C10 H9 A1AWF sing 33 n n C10 H10 A1AWF sing 34 n n C11 H11 A1AWF sing 35 n n C11 H12 A1AWF sing 36 n n C12 H13 A1AWF sing 37 n n C13 H14 A1AWF sing 38 n n C14 H15 A1AWF sing 39 n n C14 H16 A1AWF sing 40 n n C15 H17 A1AWF sing 41 n n C15 H18 A1AWF sing 42 n n C15 H19 A1AWF sing 43 n n C2C H20 A1AWF sing 44 n n C2C H21 A1AWF sing 45 n n C2C H22 A1AWF sing 46 n n C4C H23 A1AWF sing 47 n n C4C H24 A1AWF sing 48 n n C4C H25 A1AWF sing 49 n n C6C H26 A1AWF sing 50 n n C6C H27 A1AWF sing 51 n n C6C H28 A1AWF sing 52 n n C8C H29 A1AWF sing 53 n n C8C H30 A1AWF sing 54 n n C8C H31 A1AWF sing 55 n n O5C H32 A1AWF sing 56 n n C12C H33 A1AWF sing 57 n n C12C H34 A1AWF sing 58 n n C12C H35 A1AWF sing 59 n n O13C H36 A1AWF sing 60 n n # _atom_sites.entry_id 9CGN _atom_sites.fract_transf_matrix[1][1] 0.017229 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009508 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008728 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 A1AWF A 1 1401 1196 A1AWF HEP . D 2 A1AWF B 1 1401 1196 A1AWF HEP . E 3 HOH A 1 1501 11 HOH HOH . E 3 HOH A 2 1502 50 HOH HOH . E 3 HOH A 3 1503 9 HOH HOH . E 3 HOH A 4 1504 29 HOH HOH . E 3 HOH A 5 1505 8 HOH HOH . E 3 HOH A 6 1506 16 HOH HOH . E 3 HOH A 7 1507 5 HOH HOH . E 3 HOH A 8 1508 33 HOH HOH . E 3 HOH A 9 1509 17 HOH HOH . E 3 HOH A 10 1510 30 HOH HOH . E 3 HOH A 11 1511 24 HOH HOH . E 3 HOH A 12 1512 3 HOH HOH . E 3 HOH A 13 1513 2 HOH HOH . E 3 HOH A 14 1514 34 HOH HOH . E 3 HOH A 15 1515 12 HOH HOH . E 3 HOH A 16 1516 36 HOH HOH . E 3 HOH A 17 1517 27 HOH HOH . E 3 HOH A 18 1518 47 HOH HOH . E 3 HOH A 19 1519 13 HOH HOH . E 3 HOH A 20 1520 45 HOH HOH . E 3 HOH A 21 1521 44 HOH HOH . E 3 HOH A 22 1522 19 HOH HOH . E 3 HOH A 23 1523 37 HOH HOH . E 3 HOH A 24 1524 1 HOH HOH . E 3 HOH A 25 1525 18 HOH HOH . E 3 HOH A 26 1526 21 HOH HOH . E 3 HOH A 27 1527 7 HOH HOH . E 3 HOH A 28 1528 14 HOH HOH . E 3 HOH A 29 1529 23 HOH HOH . E 3 HOH A 30 1530 15 HOH HOH . E 3 HOH A 31 1531 42 HOH HOH . E 3 HOH A 32 1532 38 HOH HOH . E 3 HOH A 33 1533 10 HOH HOH . E 3 HOH A 34 1534 40 HOH HOH . E 3 HOH A 35 1535 22 HOH HOH . E 3 HOH A 36 1536 26 HOH HOH . F 3 HOH B 1 1501 39 HOH HOH . F 3 HOH B 2 1502 28 HOH HOH . F 3 HOH B 3 1503 48 HOH HOH . F 3 HOH B 4 1504 32 HOH HOH . F 3 HOH B 5 1505 4 HOH HOH . F 3 HOH B 6 1506 25 HOH HOH . F 3 HOH B 7 1507 49 HOH HOH . F 3 HOH B 8 1508 41 HOH HOH . F 3 HOH B 9 1509 35 HOH HOH . F 3 HOH B 10 1510 31 HOH HOH . F 3 HOH B 11 1511 43 HOH HOH . F 3 HOH B 12 1512 6 HOH HOH . F 3 HOH B 13 1513 46 HOH HOH . F 3 HOH B 14 1514 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 A1AWF . . . D 2 13.734 62.132 105.173 1 74 ? C1 A1AWF 1401 B 1 HETATM 2 C C2 A1AWF . . . D 2 14.095 61.02 106.178 1 74.56 ? C2 A1AWF 1401 B 1 HETATM 3 C C3 A1AWF . . . D 2 14.781 61.672 107.427 1 78.67 ? C3 A1AWF 1401 B 1 HETATM 4 C C4 A1AWF . . . D 2 15.814 60.914 108.325 1 83.25 ? C4 A1AWF 1401 B 1 HETATM 5 C C5 A1AWF . . . D 2 17.18 61.641 108.2 1 81.2 ? C5 A1AWF 1401 B 1 HETATM 6 C C6 A1AWF . . . D 2 17.657 61.516 106.74 1 75.5 ? C6 A1AWF 1401 B 1 HETATM 7 C C7 A1AWF . . . D 2 17.513 60.022 106.297 1 74.3 ? C7 A1AWF 1401 B 1 HETATM 8 C C8 A1AWF . . . D 2 18.113 59.682 104.907 1 72.68 ? C8 A1AWF 1401 B 1 HETATM 9 C C9 A1AWF . . . D 2 17.206 59.978 103.698 1 73.64 ? C9 A1AWF 1401 B 1 HETATM 10 C C10 A1AWF . . . D 2 15.711 59.562 103.614 1 67.64 ? C10 A1AWF 1401 B 1 HETATM 11 C C11 A1AWF . . . D 2 15.114 59.901 102.453 1 82.6 ? C11 A1AWF 1401 B 1 HETATM 12 C C12 A1AWF . . . D 2 13.609 59.531 102.239 1 92.68 ? C12 A1AWF 1401 B 1 HETATM 13 C C13 A1AWF . . . D 2 12.728 60.723 101.642 1 96.44 ? C13 A1AWF 1401 B 1 HETATM 14 C C14 A1AWF . . . D 2 12.478 60.634 100.099 1 94.47 ? C14 A1AWF 1401 B 1 HETATM 15 C C15 A1AWF . . . D 2 11.713 61.832 99.491 1 84.73 ? C15 A1AWF 1401 B 1 HETATM 16 C C2C A1AWF . . . D 2 12.827 60.257 106.619 1 72.45 ? C2C A1AWF 1401 B 1 HETATM 17 C C4C A1AWF . . . D 2 15.375 60.801 109.811 1 78.13 ? C4C A1AWF 1401 B 1 HETATM 18 C C6C A1AWF . . . D 2 19.09 62.08 106.657 1 70.15 ? C6C A1AWF 1401 B 1 HETATM 19 C C8C A1AWF . . . D 2 18.472 58.192 104.77 1 71.26 ? C8C A1AWF 1401 B 1 HETATM 20 O O1C A1AWF . . . D 2 14.35 62.339 104.164 1 69.6 ? O1C A1AWF 1401 B 1 HETATM 21 O O3C A1AWF . . . D 2 14.533 62.807 107.731 1 77.93 ? O3C A1AWF 1401 B 1 HETATM 22 O O5C A1AWF . . . D 2 18.157 61.014 109.011 1 80.65 ? O5C A1AWF 1401 B 1 HETATM 23 O O9C A1AWF . . . D 2 17.719 60.533 102.777 1 75.24 ? O9C A1AWF 1401 B 1 HETATM 24 C C12C A1AWF . . . D 2 13.116 58.841 103.539 1 76.97 ? C12C A1AWF 1401 B 1 HETATM 25 O O13C A1AWF . . . D 2 11.444 60.914 102.266 1 79.38 ? O13C A1AWF 1401 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 25 #