data_9CH2 # _model_server_result.job_id wcZhf02urUStNrxAsZ6VDA _model_server_result.datetime_utc '2025-02-22 20:23:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9ch2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 9CH2 # _exptl.entry_id 9CH2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9CH2 _cell.length_a 92.27 _cell.length_b 92.27 _cell.length_c 162.35 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9CH2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 126 A GLU 126 1_555 F ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc2 C OE2 GLU 126 C GLU 126 1_555 F ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 277 n n N HN1 SAH sing 278 n n N HN2 SAH sing 279 n n CA CB SAH sing 280 n n CA C SAH sing 281 n n CA HA SAH sing 282 n n CB CG SAH sing 283 n n CB HB1 SAH sing 284 n n CB HB2 SAH sing 285 n n CG SD SAH sing 286 n n CG HG1 SAH sing 287 n n CG HG2 SAH sing 288 n n SD C5' SAH sing 289 n n C O SAH doub 290 n n C OXT SAH sing 291 n n OXT HXT SAH sing 292 n n C5' C4' SAH sing 293 n n C5' "H5'1" SAH sing 294 n n C5' "H5'2" SAH sing 295 n n C4' O4' SAH sing 296 n n C4' C3' SAH sing 297 n n C4' H4' SAH sing 298 n n O4' C1' SAH sing 299 n n C3' O3' SAH sing 300 n n C3' C2' SAH sing 301 n n C3' H3' SAH sing 302 n n O3' HO3' SAH sing 303 n n C2' O2' SAH sing 304 n n C2' C1' SAH sing 305 n n C2' H2' SAH sing 306 n n O2' HO2' SAH sing 307 n n C1' N9 SAH sing 308 n n C1' H1' SAH sing 309 n n N9 C8 SAH sing 310 n y N9 C4 SAH sing 311 n y C8 N7 SAH doub 312 n y C8 H8 SAH sing 313 n n N7 C5 SAH sing 314 n y C5 C6 SAH sing 315 n y C5 C4 SAH doub 316 n y C6 N6 SAH sing 317 n n C6 N1 SAH doub 318 n y N6 HN61 SAH sing 319 n n N6 HN62 SAH sing 320 n n N1 C2 SAH sing 321 n y C2 N3 SAH doub 322 n y C2 H2 SAH sing 323 n n N3 C4 SAH sing 324 n y # _atom_sites.entry_id 9CH2 _atom_sites.fract_transf_matrix[1][1] 0.010838 _atom_sites.fract_transf_matrix[1][2] 0.006257 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012514 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00616 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 SAH A 1 301 301 SAH SAH . F 5 ZN C 1 301 1 ZN ZN . G 6 HOH A 1 401 159 HOH HOH . G 6 HOH A 2 402 58 HOH HOH . G 6 HOH A 3 403 18 HOH HOH . G 6 HOH A 4 404 113 HOH HOH . G 6 HOH A 5 405 173 HOH HOH . G 6 HOH A 6 406 68 HOH HOH . G 6 HOH A 7 407 139 HOH HOH . G 6 HOH A 8 408 14 HOH HOH . G 6 HOH A 9 409 13 HOH HOH . G 6 HOH A 10 410 24 HOH HOH . G 6 HOH A 11 411 146 HOH HOH . G 6 HOH A 12 412 154 HOH HOH . G 6 HOH A 13 413 9 HOH HOH . G 6 HOH A 14 414 143 HOH HOH . G 6 HOH A 15 415 114 HOH HOH . G 6 HOH A 16 416 169 HOH HOH . G 6 HOH A 17 417 102 HOH HOH . G 6 HOH A 18 418 7 HOH HOH . G 6 HOH A 19 419 12 HOH HOH . G 6 HOH A 20 420 20 HOH HOH . G 6 HOH A 21 421 48 HOH HOH . G 6 HOH A 22 422 39 HOH HOH . G 6 HOH A 23 423 80 HOH HOH . G 6 HOH A 24 424 129 HOH HOH . G 6 HOH A 25 425 32 HOH HOH . G 6 HOH A 26 426 72 HOH HOH . G 6 HOH A 27 427 73 HOH HOH . G 6 HOH A 28 428 174 HOH HOH . G 6 HOH A 29 429 170 HOH HOH . G 6 HOH A 30 430 21 HOH HOH . G 6 HOH A 31 431 137 HOH HOH . G 6 HOH A 32 432 88 HOH HOH . G 6 HOH A 33 433 5 HOH HOH . G 6 HOH A 34 434 50 HOH HOH . G 6 HOH A 35 435 71 HOH HOH . G 6 HOH A 36 436 92 HOH HOH . G 6 HOH A 37 437 47 HOH HOH . G 6 HOH A 38 438 145 HOH HOH . G 6 HOH A 39 439 130 HOH HOH . G 6 HOH A 40 440 91 HOH HOH . G 6 HOH A 41 441 84 HOH HOH . G 6 HOH A 42 442 134 HOH HOH . G 6 HOH A 43 443 116 HOH HOH . G 6 HOH A 44 444 66 HOH HOH . G 6 HOH A 45 445 190 HOH HOH . G 6 HOH A 46 446 27 HOH HOH . G 6 HOH A 47 447 186 HOH HOH . H 6 HOH B 1 101 184 HOH HOH . H 6 HOH B 2 102 151 HOH HOH . H 6 HOH B 3 103 131 HOH HOH . H 6 HOH B 4 104 53 HOH HOH . H 6 HOH B 5 105 188 HOH HOH . I 6 HOH C 1 401 187 HOH HOH . I 6 HOH C 2 402 45 HOH HOH . I 6 HOH C 3 403 167 HOH HOH . I 6 HOH C 4 404 86 HOH HOH . I 6 HOH C 5 405 41 HOH HOH . I 6 HOH C 6 406 144 HOH HOH . I 6 HOH C 7 407 168 HOH HOH . I 6 HOH C 8 408 6 HOH HOH . I 6 HOH C 9 409 8 HOH HOH . I 6 HOH C 10 410 111 HOH HOH . I 6 HOH C 11 411 10 HOH HOH . I 6 HOH C 12 412 55 HOH HOH . I 6 HOH C 13 413 160 HOH HOH . I 6 HOH C 14 414 142 HOH HOH . I 6 HOH C 15 415 110 HOH HOH . I 6 HOH C 16 416 138 HOH HOH . I 6 HOH C 17 417 59 HOH HOH . I 6 HOH C 18 418 29 HOH HOH . I 6 HOH C 19 419 81 HOH HOH . I 6 HOH C 20 420 54 HOH HOH . I 6 HOH C 21 421 96 HOH HOH . I 6 HOH C 22 422 3 HOH HOH . I 6 HOH C 23 423 122 HOH HOH . I 6 HOH C 24 424 83 HOH HOH . I 6 HOH C 25 425 44 HOH HOH . I 6 HOH C 26 426 19 HOH HOH . I 6 HOH C 27 427 180 HOH HOH . I 6 HOH C 28 428 42 HOH HOH . I 6 HOH C 29 429 179 HOH HOH . I 6 HOH C 30 430 65 HOH HOH . I 6 HOH C 31 431 2 HOH HOH . I 6 HOH C 32 432 157 HOH HOH . I 6 HOH C 33 433 149 HOH HOH . I 6 HOH C 34 434 60 HOH HOH . I 6 HOH C 35 435 140 HOH HOH . I 6 HOH C 36 436 97 HOH HOH . I 6 HOH C 37 437 61 HOH HOH . I 6 HOH C 38 438 69 HOH HOH . I 6 HOH C 39 439 37 HOH HOH . I 6 HOH C 40 440 35 HOH HOH . I 6 HOH C 41 441 31 HOH HOH . I 6 HOH C 42 442 74 HOH HOH . I 6 HOH C 43 443 94 HOH HOH . I 6 HOH C 44 444 172 HOH HOH . I 6 HOH C 45 445 148 HOH HOH . I 6 HOH C 46 446 1 HOH HOH . I 6 HOH C 47 447 79 HOH HOH . I 6 HOH C 48 448 25 HOH HOH . I 6 HOH C 49 449 121 HOH HOH . I 6 HOH C 50 450 177 HOH HOH . I 6 HOH C 51 451 182 HOH HOH . I 6 HOH C 52 452 161 HOH HOH . I 6 HOH C 53 453 30 HOH HOH . I 6 HOH C 54 454 162 HOH HOH . I 6 HOH C 55 455 17 HOH HOH . I 6 HOH C 56 456 132 HOH HOH . I 6 HOH C 57 457 104 HOH HOH . I 6 HOH C 58 458 57 HOH HOH . I 6 HOH C 59 459 118 HOH HOH . I 6 HOH C 60 460 26 HOH HOH . I 6 HOH C 61 461 166 HOH HOH . I 6 HOH C 62 462 181 HOH HOH . I 6 HOH C 63 463 89 HOH HOH . I 6 HOH C 64 464 112 HOH HOH . I 6 HOH C 65 465 99 HOH HOH . I 6 HOH C 66 466 185 HOH HOH . I 6 HOH C 67 467 189 HOH HOH . I 6 HOH C 68 468 115 HOH HOH . I 6 HOH C 69 469 52 HOH HOH . I 6 HOH C 70 470 183 HOH HOH . J 6 HOH D 1 101 191 HOH HOH . J 6 HOH D 2 102 128 HOH HOH . J 6 HOH D 3 103 64 HOH HOH . J 6 HOH D 4 104 156 HOH HOH . J 6 HOH D 5 105 120 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . E 4 54.212 -21.745 -7.42 0.7 65.19 ? N SAH 301 A 1 HETATM 2 C CA SAH . . . E 4 55.189 -20.68 -7.774 0.7 62.9 ? CA SAH 301 A 1 HETATM 3 C CB SAH . . . E 4 55.842 -20.965 -9.13 0.7 66.94 ? CB SAH 301 A 1 HETATM 4 C CG SAH . . . E 4 56.914 -22.038 -9.075 0.7 74.89 ? CG SAH 301 A 1 HETATM 5 S SD SAH . . . E 4 57.489 -22.563 -10.711 0.7 79.96 ? SD SAH 301 A 1 HETATM 6 C C SAH . . . E 4 54.463 -19.33 -7.826 0.7 70.02 ? C SAH 301 A 1 HETATM 7 O O SAH . . . E 4 53.363 -19.256 -7.246 0.7 65.91 ? O SAH 301 A 1 HETATM 8 O OXT SAH . . . E 4 55.024 -18.402 -8.442 0.7 56.96 ? OXT SAH 301 A 1 HETATM 9 C C5' SAH . . . E 4 58.926 -21.494 -10.974 0.7 68.98 ? C5' SAH 301 A 1 HETATM 10 C C4' SAH . . . E 4 58.659 -20.349 -11.92 0.7 63.83 ? C4' SAH 301 A 1 HETATM 11 O O4' SAH . . . E 4 57.914 -19.318 -11.231 0.7 66.49 ? O4' SAH 301 A 1 HETATM 12 C C3' SAH . . . E 4 59.9 -19.638 -12.45 0.7 63.56 ? C3' SAH 301 A 1 HETATM 13 O O3' SAH . . . E 4 60.445 -20.307 -13.58 0.7 64.08 ? O3' SAH 301 A 1 HETATM 14 C C2' SAH . . . E 4 59.317 -18.271 -12.812 0.7 66.99 ? C2' SAH 301 A 1 HETATM 15 O O2' SAH . . . E 4 58.626 -18.276 -14.042 0.7 57.71 ? O2' SAH 301 A 1 HETATM 16 C C1' SAH . . . E 4 58.366 -18.046 -11.64 0.7 67.73 ? C1' SAH 301 A 1 HETATM 17 N N9 SAH . . . E 4 59.001 -17.387 -10.506 0.7 72.52 ? N9 SAH 301 A 1 HETATM 18 C C8 SAH . . . E 4 59.505 -17.986 -9.379 0.7 72.7 ? C8 SAH 301 A 1 HETATM 19 N N7 SAH . . . E 4 60.027 -17.137 -8.529 0.7 67.05 ? N7 SAH 301 A 1 HETATM 20 C C5 SAH . . . E 4 59.861 -15.899 -9.133 0.7 77.27 ? C5 SAH 301 A 1 HETATM 21 C C6 SAH . . . E 4 60.208 -14.595 -8.731 0.7 77.26 ? C6 SAH 301 A 1 HETATM 22 N N6 SAH . . . E 4 60.817 -14.313 -7.582 0.7 74.6 ? N6 SAH 301 A 1 HETATM 23 N N1 SAH . . . E 4 59.899 -13.579 -9.571 0.7 73.14 ? N1 SAH 301 A 1 HETATM 24 C C2 SAH . . . E 4 59.288 -13.87 -10.726 0.7 65.55 ? C2 SAH 301 A 1 HETATM 25 N N3 SAH . . . E 4 58.915 -15.052 -11.207 0.7 66.02 ? N3 SAH 301 A 1 HETATM 26 C C4 SAH . . . E 4 59.232 -16.04 -10.355 0.7 76.15 ? C4 SAH 301 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 26 #