data_9CJ1 # _model_server_result.job_id 1aSxomm3eQQthgQJABEbdA _model_server_result.datetime_utc '2024-11-15 14:43:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9cj1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 9CJ1 # _exptl.entry_id 9CJ1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 529.516 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Nilotinib _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.8 _cell.angle_gamma 90 _cell.entry_id 9CJ1 _cell.length_a 38.137 _cell.length_b 67.195 _cell.length_c 63.016 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9CJ1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 119 A CYS 119 1_555 A SG CYS 162 A CYS 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A C PTR 182 A PTR 182 1_555 A N VAL 183 A VAL 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C28 H22 F3 N7 O' _chem_comp.formula_weight 529.516 _chem_comp.id NIL _chem_comp.mon_nstd_flag . _chem_comp.name Nilotinib _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 4-methyl-N-[3-(4-methyl-1H-imidazol-1-yl)-5-(trifluoromethyl)phenyl]-3-[(4-pyridin-3-ylpyrimidin-2-yl)amino]benzamide # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O17 C16 NIL doub 246 n n C16 N14 NIL sing 247 n n C16 C18 NIL sing 248 n n N14 C11 NIL sing 249 n n C11 C9 NIL doub 250 n y C11 C12 NIL sing 251 n y C9 C8 NIL sing 252 n y C8 N51 NIL sing 253 n y C8 C6 NIL doub 254 n y N51 C56 NIL sing 255 n y N51 C52 NIL sing 256 n y C56 C55 NIL doub 257 n y C55 C58 NIL sing 258 n n C55 N54 NIL sing 259 n y N54 C52 NIL doub 260 n y C6 C5 NIL sing 261 n y C12 C5 NIL doub 262 n y C5 C2 NIL sing 263 n n C2 F4 NIL sing 264 n n C2 F3 NIL sing 265 n n C2 F1 NIL sing 266 n n C18 C25 NIL doub 267 n y C18 C19 NIL sing 268 n y C25 C23 NIL sing 269 n y C23 C22 NIL doub 270 n y C22 C27 NIL sing 271 n n C22 C21 NIL sing 272 n y C21 C19 NIL doub 273 n y C21 N31 NIL sing 274 n n N31 C33 NIL sing 275 n n C33 N40 NIL doub 276 n y C33 N34 NIL sing 277 n y N40 C38 NIL sing 278 n y C38 C36 NIL doub 279 n y C36 C35 NIL sing 280 n y C35 N34 NIL doub 281 n y C35 C41 NIL sing 282 n y C41 C49 NIL doub 283 n y C41 C42 NIL sing 284 n y C49 C47 NIL sing 285 n y C47 C45 NIL doub 286 n y C45 N44 NIL sing 287 n y N44 C42 NIL doub 288 n y N14 HN14 NIL sing 289 n n C9 H9 NIL sing 290 n n C56 H56 NIL sing 291 n n C58 H58 NIL sing 292 n n C58 H58A NIL sing 293 n n C58 H58B NIL sing 294 n n C52 H52 NIL sing 295 n n C6 H6 NIL sing 296 n n C12 H12 NIL sing 297 n n C25 H25 NIL sing 298 n n C23 H23 NIL sing 299 n n C27 H27 NIL sing 300 n n C27 H27A NIL sing 301 n n C27 H27B NIL sing 302 n n C19 H19 NIL sing 303 n n N31 HN31 NIL sing 304 n n C38 H38 NIL sing 305 n n C36 H36 NIL sing 306 n n C49 H49 NIL sing 307 n n C47 H47 NIL sing 308 n n C45 H45 NIL sing 309 n n C42 H42 NIL sing 310 n n # _atom_sites.entry_id 9CJ1 _atom_sites.fract_transf_matrix[1][1] 0.026221 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003592 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014882 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016017 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 401 164 EDO EDO . C 3 NIL A 1 402 401 NIL NIL . D 2 EDO A 1 403 403 EDO EDO . E 2 EDO A 1 404 404 EDO EDO . F 2 EDO A 1 405 405 EDO EDO . G 2 EDO A 1 406 406 EDO EDO . H 2 EDO A 1 407 407 EDO EDO . I 4 HOH A 1 501 140 HOH HOH . I 4 HOH A 2 502 108 HOH HOH . I 4 HOH A 3 503 127 HOH HOH . I 4 HOH A 4 504 135 HOH HOH . I 4 HOH A 5 505 17 HOH HOH . I 4 HOH A 6 506 35 HOH HOH . I 4 HOH A 7 507 82 HOH HOH . I 4 HOH A 8 508 91 HOH HOH . I 4 HOH A 9 509 118 HOH HOH . I 4 HOH A 10 510 48 HOH HOH . I 4 HOH A 11 511 49 HOH HOH . I 4 HOH A 12 512 43 HOH HOH . I 4 HOH A 13 513 31 HOH HOH . I 4 HOH A 14 514 37 HOH HOH . I 4 HOH A 15 515 60 HOH HOH . I 4 HOH A 16 516 32 HOH HOH . I 4 HOH A 17 517 77 HOH HOH . I 4 HOH A 18 518 12 HOH HOH . I 4 HOH A 19 519 66 HOH HOH . I 4 HOH A 20 520 14 HOH HOH . I 4 HOH A 21 521 45 HOH HOH . I 4 HOH A 22 522 56 HOH HOH . I 4 HOH A 23 523 19 HOH HOH . I 4 HOH A 24 524 72 HOH HOH . I 4 HOH A 25 525 139 HOH HOH . I 4 HOH A 26 526 114 HOH HOH . I 4 HOH A 27 527 100 HOH HOH . I 4 HOH A 28 528 6 HOH HOH . I 4 HOH A 29 529 116 HOH HOH . I 4 HOH A 30 530 79 HOH HOH . I 4 HOH A 31 531 25 HOH HOH . I 4 HOH A 32 532 150 HOH HOH . I 4 HOH A 33 533 52 HOH HOH . I 4 HOH A 34 534 28 HOH HOH . I 4 HOH A 35 535 20 HOH HOH . I 4 HOH A 36 536 38 HOH HOH . I 4 HOH A 37 537 22 HOH HOH . I 4 HOH A 38 538 13 HOH HOH . I 4 HOH A 39 539 106 HOH HOH . I 4 HOH A 40 540 18 HOH HOH . I 4 HOH A 41 541 75 HOH HOH . I 4 HOH A 42 542 41 HOH HOH . I 4 HOH A 43 543 24 HOH HOH . I 4 HOH A 44 544 23 HOH HOH . I 4 HOH A 45 545 86 HOH HOH . I 4 HOH A 46 546 33 HOH HOH . I 4 HOH A 47 547 129 HOH HOH . I 4 HOH A 48 548 7 HOH HOH . I 4 HOH A 49 549 137 HOH HOH . I 4 HOH A 50 550 27 HOH HOH . I 4 HOH A 51 551 26 HOH HOH . I 4 HOH A 52 552 3 HOH HOH . I 4 HOH A 53 553 132 HOH HOH . I 4 HOH A 54 554 126 HOH HOH . I 4 HOH A 55 555 67 HOH HOH . I 4 HOH A 56 556 151 HOH HOH . I 4 HOH A 57 557 73 HOH HOH . I 4 HOH A 58 558 8 HOH HOH . I 4 HOH A 59 559 5 HOH HOH . I 4 HOH A 60 560 63 HOH HOH . I 4 HOH A 61 561 134 HOH HOH . I 4 HOH A 62 562 11 HOH HOH . I 4 HOH A 63 563 15 HOH HOH . I 4 HOH A 64 564 2 HOH HOH . I 4 HOH A 65 565 83 HOH HOH . I 4 HOH A 66 566 34 HOH HOH . I 4 HOH A 67 567 123 HOH HOH . I 4 HOH A 68 568 65 HOH HOH . I 4 HOH A 69 569 96 HOH HOH . I 4 HOH A 70 570 1 HOH HOH . I 4 HOH A 71 571 54 HOH HOH . I 4 HOH A 72 572 9 HOH HOH . I 4 HOH A 73 573 50 HOH HOH . I 4 HOH A 74 574 109 HOH HOH . I 4 HOH A 75 575 47 HOH HOH . I 4 HOH A 76 576 57 HOH HOH . I 4 HOH A 77 577 62 HOH HOH . I 4 HOH A 78 578 21 HOH HOH . I 4 HOH A 79 579 70 HOH HOH . I 4 HOH A 80 580 44 HOH HOH . I 4 HOH A 81 581 144 HOH HOH . I 4 HOH A 82 582 16 HOH HOH . I 4 HOH A 83 583 36 HOH HOH . I 4 HOH A 84 584 4 HOH HOH . I 4 HOH A 85 585 112 HOH HOH . I 4 HOH A 86 586 59 HOH HOH . I 4 HOH A 87 587 58 HOH HOH . I 4 HOH A 88 588 145 HOH HOH . I 4 HOH A 89 589 85 HOH HOH . I 4 HOH A 90 590 30 HOH HOH . I 4 HOH A 91 591 89 HOH HOH . I 4 HOH A 92 592 133 HOH HOH . I 4 HOH A 93 593 146 HOH HOH . I 4 HOH A 94 594 152 HOH HOH . I 4 HOH A 95 595 42 HOH HOH . I 4 HOH A 96 596 92 HOH HOH . I 4 HOH A 97 597 128 HOH HOH . I 4 HOH A 98 598 46 HOH HOH . I 4 HOH A 99 599 110 HOH HOH . I 4 HOH A 100 600 99 HOH HOH . I 4 HOH A 101 601 10 HOH HOH . I 4 HOH A 102 602 154 HOH HOH . I 4 HOH A 103 603 51 HOH HOH . I 4 HOH A 104 604 69 HOH HOH . I 4 HOH A 105 605 143 HOH HOH . I 4 HOH A 106 606 64 HOH HOH . I 4 HOH A 107 607 29 HOH HOH . I 4 HOH A 108 608 105 HOH HOH . I 4 HOH A 109 609 39 HOH HOH . I 4 HOH A 110 610 88 HOH HOH . I 4 HOH A 111 611 76 HOH HOH . I 4 HOH A 112 612 87 HOH HOH . I 4 HOH A 113 613 120 HOH HOH . I 4 HOH A 114 614 78 HOH HOH . I 4 HOH A 115 615 97 HOH HOH . I 4 HOH A 116 616 71 HOH HOH . I 4 HOH A 117 617 124 HOH HOH . I 4 HOH A 118 618 136 HOH HOH . I 4 HOH A 119 619 90 HOH HOH . I 4 HOH A 120 620 95 HOH HOH . I 4 HOH A 121 621 104 HOH HOH . I 4 HOH A 122 622 81 HOH HOH . I 4 HOH A 123 623 84 HOH HOH . I 4 HOH A 124 624 131 HOH HOH . I 4 HOH A 125 625 74 HOH HOH . I 4 HOH A 126 626 101 HOH HOH . I 4 HOH A 127 627 125 HOH HOH . I 4 HOH A 128 628 94 HOH HOH . I 4 HOH A 129 629 93 HOH HOH . I 4 HOH A 130 630 148 HOH HOH . I 4 HOH A 131 631 141 HOH HOH . I 4 HOH A 132 632 147 HOH HOH . I 4 HOH A 133 633 117 HOH HOH . I 4 HOH A 134 634 55 HOH HOH . I 4 HOH A 135 635 107 HOH HOH . I 4 HOH A 136 636 113 HOH HOH . I 4 HOH A 137 637 153 HOH HOH . I 4 HOH A 138 638 53 HOH HOH . I 4 HOH A 139 639 40 HOH HOH . I 4 HOH A 140 640 103 HOH HOH . I 4 HOH A 141 641 115 HOH HOH . I 4 HOH A 142 642 102 HOH HOH . I 4 HOH A 143 643 130 HOH HOH . I 4 HOH A 144 644 142 HOH HOH . I 4 HOH A 145 645 121 HOH HOH . I 4 HOH A 146 646 138 HOH HOH . I 4 HOH A 147 647 149 HOH HOH . I 4 HOH A 148 648 68 HOH HOH . I 4 HOH A 149 649 61 HOH HOH . I 4 HOH A 150 650 98 HOH HOH . I 4 HOH A 151 651 122 HOH HOH . I 4 HOH A 152 652 80 HOH HOH . I 4 HOH A 153 653 119 HOH HOH . I 4 HOH A 154 654 111 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O17 NIL . . . C 3 -2.136 13.121 -15.113 1 33.12 ? O17 NIL 402 A 1 HETATM 2 C C16 NIL . . . C 3 -2.904 13.912 -14.675 1 30.34 ? C16 NIL 402 A 1 HETATM 3 N N14 NIL . . . C 3 -3.746 13.637 -13.519 1 28.55 ? N14 NIL 402 A 1 HETATM 4 C C11 NIL . . . C 3 -3.689 12.393 -12.768 1 34.6 ? C11 NIL 402 A 1 HETATM 5 C C9 NIL . . . C 3 -4.795 12.066 -12.02 1 35.96 ? C9 NIL 402 A 1 HETATM 6 C C8 NIL . . . C 3 -4.807 10.917 -11.264 1 43.87 ? C8 NIL 402 A 1 HETATM 7 N N51 NIL . . . C 3 -5.91 10.662 -10.558 1 43.01 ? N51 NIL 402 A 1 HETATM 8 C C56 NIL . . . C 3 -7.086 11.245 -10.722 1 37.72 ? C56 NIL 402 A 1 HETATM 9 C C55 NIL . . . C 3 -7.95 10.729 -9.796 1 40.25 ? C55 NIL 402 A 1 HETATM 10 C C58 NIL . . . C 3 -9.425 11.101 -9.618 1 42.72 ? C58 NIL 402 A 1 HETATM 11 N N54 NIL . . . C 3 -7.288 9.855 -9.077 1 44.03 ? N54 NIL 402 A 1 HETATM 12 C C52 NIL . . . C 3 -6.021 9.806 -9.529 1 53.95 ? C52 NIL 402 A 1 HETATM 13 C C6 NIL . . . C 3 -3.684 10.098 -11.238 1 39.61 ? C6 NIL 402 A 1 HETATM 14 C C12 NIL . . . C 3 -2.557 11.586 -12.744 1 29.98 ? C12 NIL 402 A 1 HETATM 15 C C5 NIL . . . C 3 -2.559 10.424 -11.983 1 36.57 ? C5 NIL 402 A 1 HETATM 16 C C2 NIL . . . C 3 -1.305 9.547 -11.986 1 47.74 ? C2 NIL 402 A 1 HETATM 17 F F4 NIL . . . C 3 -0.265 10.269 -11.487 1 52.93 ? F4 NIL 402 A 1 HETATM 18 F F3 NIL . . . C 3 -1.47 8.438 -11.226 1 50.3 ? F3 NIL 402 A 1 HETATM 19 F F1 NIL . . . C 3 -1.012 9.145 -13.258 1 41.31 ? F1 NIL 402 A 1 HETATM 20 C C18 NIL . . . C 3 -3.048 15.282 -15.331 1 29.8 ? C18 NIL 402 A 1 HETATM 21 C C25 NIL . . . C 3 -3.796 16.302 -14.736 1 33.87 ? C25 NIL 402 A 1 HETATM 22 C C23 NIL . . . C 3 -3.899 17.547 -15.352 1 33.51 ? C23 NIL 402 A 1 HETATM 23 C C22 NIL . . . C 3 -3.239 17.754 -16.56 1 36.29 ? C22 NIL 402 A 1 HETATM 24 C C27 NIL . . . C 3 -3.307 19.102 -17.296 1 32.06 ? C27 NIL 402 A 1 HETATM 25 C C21 NIL . . . C 3 -2.502 16.726 -17.121 1 28.34 ? C21 NIL 402 A 1 HETATM 26 C C19 NIL . . . C 3 -2.386 15.486 -16.524 1 29.3 ? C19 NIL 402 A 1 HETATM 27 N N31 NIL . . . C 3 -1.807 16.945 -18.375 1 28.45 ? N31 NIL 402 A 1 HETATM 28 C C33 NIL . . . C 3 -2.249 16.268 -19.564 1 28.59 ? C33 NIL 402 A 1 HETATM 29 N N40 NIL . . . C 3 -3.454 15.673 -19.638 1 33.46 ? N40 NIL 402 A 1 HETATM 30 C C38 NIL . . . C 3 -3.819 15.063 -20.754 1 46.52 ? C38 NIL 402 A 1 HETATM 31 C C36 NIL . . . C 3 -2.975 15.044 -21.822 1 39.69 ? C36 NIL 402 A 1 HETATM 32 C C35 NIL . . . C 3 -1.769 15.645 -21.727 1 47.42 ? C35 NIL 402 A 1 HETATM 33 N N34 NIL . . . C 3 -1.404 16.247 -20.619 1 28.35 ? N34 NIL 402 A 1 HETATM 34 C C41 NIL . . . C 3 -0.858 15.664 -22.777 1 50.91 ? C41 NIL 402 A 1 HETATM 35 C C49 NIL . . . C 3 -1.278 15.744 -24.063 1 60 ? C49 NIL 402 A 1 HETATM 36 C C47 NIL . . . C 3 -0.353 15.773 -25.052 1 62.64 ? C47 NIL 402 A 1 HETATM 37 C C45 NIL . . . C 3 1 15.729 -24.741 1 45.82 ? C45 NIL 402 A 1 HETATM 38 N N44 NIL . . . C 3 1.415 15.653 -23.456 1 64.58 ? N44 NIL 402 A 1 HETATM 39 C C42 NIL . . . C 3 0.492 15.623 -22.464 1 42.92 ? C42 NIL 402 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 589 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 39 #