data_9CJ5 # _model_server_result.job_id uymwKHUFqQ7L2ZYrIxoPOg _model_server_result.datetime_utc '2024-11-15 04:49:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9cj5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 9CJ5 # _exptl.entry_id 9CJ5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 556.631 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Pexmetinib _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9CJ5 _cell.length_a 44.855 _cell.length_b 44.855 _cell.length_c 215.906 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9CJ5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C31 H33 F N6 O3' _chem_comp.formula_weight 556.631 _chem_comp.id A1AWV _chem_comp.mon_nstd_flag . _chem_comp.name Pexmetinib _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "N-[3-tert-butyl-1-(4-methylphenyl)-1H-pyrazol-5-yl]-N'-[(5-fluoro-2-{[1-(2-hydroxyethyl)-1H-indazol-5-yl]oxy}phenyl)methyl]urea" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C24 C23 A1AWV sing 1 n n C22 C23 A1AWV doub 2 n y C22 C21 A1AWV sing 3 n y C23 C25 A1AWV sing 4 n y C17 C16 A1AWV sing 5 n n C21 C20 A1AWV doub 6 n y C25 C26 A1AWV doub 7 n y C20 C26 A1AWV sing 8 n y C20 N6 A1AWV sing 9 n n N5 N6 A1AWV sing 10 n y N5 C15 A1AWV doub 11 n y C16 C19 A1AWV sing 12 n n C16 C15 A1AWV sing 13 n n C16 C18 A1AWV sing 14 n n N6 C13 A1AWV sing 15 n y C15 C14 A1AWV sing 16 n y C13 C14 A1AWV doub 17 n y C13 N4 A1AWV sing 18 n n N4 C12 A1AWV sing 19 n n C12 O3 A1AWV doub 20 n n C12 N3 A1AWV sing 21 n n N3 C11 A1AWV sing 22 n n C11 C10 A1AWV sing 23 n n C10 C27 A1AWV doub 24 n y C10 C9 A1AWV sing 25 n y O2 C9 A1AWV sing 26 n n O2 C8 A1AWV sing 27 n n C27 C28 A1AWV sing 28 n y C7 C8 A1AWV doub 29 n y C7 C6 A1AWV sing 30 n y C9 C30 A1AWV doub 31 n y C8 C31 A1AWV sing 32 n y C6 C5 A1AWV doub 33 n y C28 F1 A1AWV sing 34 n n C28 C29 A1AWV doub 35 n y C5 C4 A1AWV sing 36 n y C5 N1 A1AWV sing 37 n y C31 C4 A1AWV doub 38 n y C30 C29 A1AWV sing 39 n y C4 C3 A1AWV sing 40 n y C2 N1 A1AWV sing 41 n n C2 C1 A1AWV sing 42 n n N1 N2 A1AWV sing 43 n y C3 N2 A1AWV doub 44 n y C1 O1 A1AWV sing 45 n n N3 H1 A1AWV sing 46 n n C6 H2 A1AWV sing 47 n n C7 H3 A1AWV sing 48 n n C17 H4 A1AWV sing 49 n n C17 H5 A1AWV sing 50 n n C17 H6 A1AWV sing 51 n n C21 H7 A1AWV sing 52 n n C22 H8 A1AWV sing 53 n n C24 H9 A1AWV sing 54 n n C24 H10 A1AWV sing 55 n n C24 H11 A1AWV sing 56 n n C26 H12 A1AWV sing 57 n n C1 H13 A1AWV sing 58 n n C1 H14 A1AWV sing 59 n n C11 H15 A1AWV sing 60 n n C11 H16 A1AWV sing 61 n n C14 H17 A1AWV sing 62 n n C18 H18 A1AWV sing 63 n n C18 H19 A1AWV sing 64 n n C18 H20 A1AWV sing 65 n n C19 H21 A1AWV sing 66 n n C19 H22 A1AWV sing 67 n n C19 H23 A1AWV sing 68 n n C2 H24 A1AWV sing 69 n n C2 H25 A1AWV sing 70 n n C25 H26 A1AWV sing 71 n n C27 H27 A1AWV sing 72 n n C29 H28 A1AWV sing 73 n n C3 H29 A1AWV sing 74 n n C30 H30 A1AWV sing 75 n n C31 H31 A1AWV sing 76 n n N4 H32 A1AWV sing 77 n n O1 H33 A1AWV sing 78 n n # _atom_sites.entry_id 9CJ5 _atom_sites.fract_transf_matrix[1][1] 0.022294 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022294 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004632 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 401 1 EDO EDO . C 2 EDO A 1 402 2 EDO EDO . D 2 EDO A 1 403 3 EDO EDO . E 3 A1AWV A 1 404 4 A1AWV LIG . F 4 PDO A 1 405 5 PDO PDO . G 2 EDO A 1 406 6 EDO EDO . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 A1AWV . . . E 3 0.315 -12.711 1.627 1 98.85 ? N1 A1AWV 404 A 1 HETATM 2 N N3 A1AWV . . . E 3 -3.937 -19.043 -2.033 1 110.97 ? N3 A1AWV 404 A 1 HETATM 3 C C4 A1AWV . . . E 3 -1.635 -13.662 2.068 1 100.32 ? C4 A1AWV 404 A 1 HETATM 4 C C5 A1AWV . . . E 3 -0.443 -13.889 1.329 1 82.13 ? C5 A1AWV 404 A 1 HETATM 5 C C6 A1AWV . . . E 3 -0.316 -15.048 0.602 1 93.92 ? C6 A1AWV 404 A 1 HETATM 6 C C7 A1AWV . . . E 3 -1.364 -15.985 0.59 1 90.17 ? C7 A1AWV 404 A 1 HETATM 7 C C8 A1AWV . . . E 3 -2.542 -15.742 1.333 1 87.41 ? C8 A1AWV 404 A 1 HETATM 8 C C10 A1AWV . . . E 3 -3.169 -18.73 0.297 1 99.83 ? C10 A1AWV 404 A 1 HETATM 9 C C13 A1AWV . . . E 3 -2.65 -20.343 -5.432 1 113.14 ? C13 A1AWV 404 A 1 HETATM 10 C C15 A1AWV . . . E 3 -0.936 -20.376 -6.98 1 110.05 ? C15 A1AWV 404 A 1 HETATM 11 C C17 A1AWV . . . E 3 0.936 -21.539 -8.178 1 75.35 ? C17 A1AWV 404 A 1 HETATM 12 C C20 A1AWV . . . E 3 -4.328 -21.429 -6.934 1 121.4 ? C20 A1AWV 404 A 1 HETATM 13 C C21 A1AWV . . . E 3 -4.762 -21.387 -8.252 1 135.39 ? C21 A1AWV 404 A 1 HETATM 14 C C22 A1AWV . . . E 3 -6.01 -21.883 -8.601 1 147.68 ? C22 A1AWV 404 A 1 HETATM 15 C C24 A1AWV . . . E 3 -8.212 -22.981 -7.991 1 147.95 ? C24 A1AWV 404 A 1 HETATM 16 C C26 A1AWV . . . E 3 -5.156 -21.98 -5.973 1 124.17 ? C26 A1AWV 404 A 1 HETATM 17 C C28 A1AWV . . . E 3 -2.374 -20.602 1.568 1 118.6 ? C28 A1AWV 404 A 1 HETATM 18 C C1 A1AWV . . . E 3 1.565 -11.09 0.35 1 134.07 ? C1 A1AWV 404 A 1 HETATM 19 C C11 A1AWV . . . E 3 -3.598 -18.069 -1.01 1 118.75 ? C11 A1AWV 404 A 1 HETATM 20 C C12 A1AWV . . . E 3 -3.097 -19.183 -3.213 1 110.78 ? C12 A1AWV 404 A 1 HETATM 21 C C14 A1AWV . . . E 3 -1.299 -19.97 -5.568 1 117.18 ? C14 A1AWV 404 A 1 HETATM 22 C C16 A1AWV . . . E 3 0.422 -20.196 -7.672 1 101.07 ? C16 A1AWV 404 A 1 HETATM 23 C C18 A1AWV . . . E 3 1.445 -19.62 -6.698 1 123.62 ? C18 A1AWV 404 A 1 HETATM 24 C C19 A1AWV . . . E 3 0.292 -19.24 -8.856 1 115.55 ? C19 A1AWV 404 A 1 HETATM 25 C C2 A1AWV . . . E 3 1.632 -12.431 1.098 1 124.62 ? C2 A1AWV 404 A 1 HETATM 26 C C23 A1AWV . . . E 3 -6.834 -22.428 -7.63 1 138.51 ? C23 A1AWV 404 A 1 HETATM 27 C C25 A1AWV . . . E 3 -6.405 -22.473 -6.318 1 121.84 ? C25 A1AWV 404 A 1 HETATM 28 C C27 A1AWV . . . E 3 -2.755 -20.05 0.35 1 117.9 ? C27 A1AWV 404 A 1 HETATM 29 C C29 A1AWV . . . E 3 -2.406 -19.838 2.725 1 115.71 ? C29 A1AWV 404 A 1 HETATM 30 C C3 A1AWV . . . E 3 -1.428 -12.394 2.695 1 161.24 ? C3 A1AWV 404 A 1 HETATM 31 C C30 A1AWV . . . E 3 -2.82 -18.517 2.667 1 121.46 ? C30 A1AWV 404 A 1 HETATM 32 C C31 A1AWV . . . E 3 -2.658 -14.566 2.066 1 95.57 ? C31 A1AWV 404 A 1 HETATM 33 C C9 A1AWV . . . E 3 -3.193 -17.966 1.45 1 100.86 ? C9 A1AWV 404 A 1 HETATM 34 F F1 A1AWV . . . E 3 -1.963 -21.903 1.636 1 130.29 ? F1 A1AWV 404 A 1 HETATM 35 N N2 A1AWV . . . E 3 -0.293 -11.842 2.439 1 143.12 ? N2 A1AWV 404 A 1 HETATM 36 N N4 A1AWV . . . E 3 -3.46 -20.161 -4.235 1 102.89 ? N4 A1AWV 404 A 1 HETATM 37 N N5 A1AWV . . . E 3 -2.061 -20.936 -7.526 1 92.76 ? N5 A1AWV 404 A 1 HETATM 38 N N6 A1AWV . . . E 3 -3.005 -20.899 -6.61 1 115.08 ? N6 A1AWV 404 A 1 HETATM 39 O O1 A1AWV . . . E 3 0.247 -10.599 0.287 1 128.21 ? O1 A1AWV 404 A 1 HETATM 40 O O2 A1AWV . . . E 3 -3.624 -16.636 1.365 1 86.96 ? O2 A1AWV 404 A 1 HETATM 41 O O3 A1AWV . . . E 3 -2.127 -18.507 -3.342 1 111.95 ? O3 A1AWV 404 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 41 #