data_9CJL
#
_model_server_result.job_id            4op4Z23kOorEYh1CV-pcvA 
_model_server_result.datetime_utc      '2024-11-14 07:30:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9cjl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":301}' 
#
_entry.id    9CJL 
#
_exptl.entry_id    9CJL 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              1023.066 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(2R)-2-[(E)-octadec-9-enoyl]oxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] (E)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    12-meric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 M N N 
? 2 N N N 
#
_chem_comp.formula           'C45 H85 O19 P3' 
_chem_comp.formula_weight    1023.066 
_chem_comp.id                9ED 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(2R)-2-[(E)-octadec-9-enoyl]oxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] (E)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     PtdIns(4,5)P2 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C57 C53 9ED sing 1 n n 
C57 C63 9ED sing 2 n n 
C53 C49 9ED sing 3 n n 
C50 C49 9ED sing 4 n n 
C62 C63 9ED doub 5 e n 
C62 C51 9ED sing 6 n n 
C51 C45 9ED sing 7 n n 
C54 C48 9ED sing 8 n n 
C54 C58 9ED sing 9 n n 
C48 C47 9ED sing 10 n n 
C47 C52 9ED sing 11 n n 
C45 C44 9ED sing 12 n n 
C52 C56 9ED sing 13 n n 
C44 C42 9ED sing 14 n n 
C42 C40 9ED sing 15 n n 
C56 C61 9ED sing 16 n n 
C61 C60 9ED doub 17 e n 
C40 C39 9ED sing 18 n n 
C60 C46 9ED sing 19 n n 
C39 C37 9ED sing 20 n n 
C46 C43 9ED sing 21 n n 
O22 C35 9ED doub 22 n n 
C37 C35 9ED sing 23 n n 
C35 O20 9ED sing 24 n n 
C43 C41 9ED sing 25 n n 
C41 C38 9ED sing 26 n n 
O11 P01 9ED doub 27 n n 
O20 C31 9ED sing 28 n n 
C31 C30 9ED sing 29 n n 
C33 C32 9ED sing 30 n n 
C33 C34 9ED sing 31 n n 
C36 C38 9ED sing 32 n n 
C36 C34 9ED sing 33 n n 
C30 O19 9ED sing 34 n n 
C30 C29 9ED sing 35 n n 
P01 O10 9ED sing 36 n n 
P01 O04 9ED sing 37 n n 
P01 O16 9ED sing 38 n n 
C32 O21 9ED doub 39 n n 
C32 O19 9ED sing 40 n n 
O10 C29 9ED sing 41 n n 
O04 C25 9ED sing 42 n n 
O09 C28 9ED sing 43 n n 
C28 C25 9ED sing 44 n n 
C28 C27 9ED sing 45 n n 
C25 C26 9ED sing 46 n n 
O08 C27 9ED sing 47 n n 
C27 C24 9ED sing 48 n n 
C26 O07 9ED sing 49 n n 
C26 C23 9ED sing 50 n n 
C24 C23 9ED sing 51 n n 
C24 O06 9ED sing 52 n n 
C23 O05 9ED sing 53 n n 
O06 P03 9ED sing 54 n n 
O05 P02 9ED sing 55 n n 
O14 P03 9ED doub 56 n n 
O13 P02 9ED doub 57 n n 
P03 O18 9ED sing 58 n n 
P03 O15 9ED sing 59 n n 
P02 O17 9ED sing 60 n n 
P02 O12 9ED sing 61 n n 
C24 H1 9ED sing 62 n n 
C26 H2 9ED sing 63 n n 
C28 H3 9ED sing 64 n n 
O07 H4 9ED sing 65 n n 
O08 H5 9ED sing 66 n n 
O09 H6 9ED sing 67 n n 
O12 H7 9ED sing 68 n n 
O15 H8 9ED sing 69 n n 
O16 H9 9ED sing 70 n n 
O17 H10 9ED sing 71 n n 
O18 H11 9ED sing 72 n n 
C23 H12 9ED sing 73 n n 
C25 H13 9ED sing 74 n n 
C27 H14 9ED sing 75 n n 
C29 H15 9ED sing 76 n n 
C29 H16 9ED sing 77 n n 
C30 H17 9ED sing 78 n n 
C31 H18 9ED sing 79 n n 
C31 H19 9ED sing 80 n n 
C33 H20 9ED sing 81 n n 
C33 H21 9ED sing 82 n n 
C34 H22 9ED sing 83 n n 
C34 H23 9ED sing 84 n n 
C36 H24 9ED sing 85 n n 
C36 H25 9ED sing 86 n n 
C37 H26 9ED sing 87 n n 
C37 H27 9ED sing 88 n n 
C38 H28 9ED sing 89 n n 
C38 H29 9ED sing 90 n n 
C39 H30 9ED sing 91 n n 
C39 H31 9ED sing 92 n n 
C40 H32 9ED sing 93 n n 
C40 H33 9ED sing 94 n n 
C41 H34 9ED sing 95 n n 
C41 H35 9ED sing 96 n n 
C42 H36 9ED sing 97 n n 
C42 H37 9ED sing 98 n n 
C43 H38 9ED sing 99 n n 
C43 H39 9ED sing 100 n n 
C44 H40 9ED sing 101 n n 
C44 H41 9ED sing 102 n n 
C45 H42 9ED sing 103 n n 
C45 H43 9ED sing 104 n n 
C46 H44 9ED sing 105 n n 
C46 H45 9ED sing 106 n n 
C47 H46 9ED sing 107 n n 
C47 H47 9ED sing 108 n n 
C48 H48 9ED sing 109 n n 
C48 H49 9ED sing 110 n n 
C49 H50 9ED sing 111 n n 
C49 H51 9ED sing 112 n n 
C50 H52 9ED sing 113 n n 
C50 H53 9ED sing 114 n n 
C51 H55 9ED sing 115 n n 
C51 H56 9ED sing 116 n n 
C52 H57 9ED sing 117 n n 
C52 H58 9ED sing 118 n n 
C53 H59 9ED sing 119 n n 
C53 H60 9ED sing 120 n n 
C54 H61 9ED sing 121 n n 
C54 H62 9ED sing 122 n n 
C56 H63 9ED sing 123 n n 
C56 H64 9ED sing 124 n n 
C57 H65 9ED sing 125 n n 
C57 H66 9ED sing 126 n n 
C58 H67 9ED sing 127 n n 
C58 H69 9ED sing 128 n n 
C60 H70 9ED sing 129 n n 
C61 H71 9ED sing 130 n n 
C62 H72 9ED sing 131 n n 
C63 H73 9ED sing 132 n n 
C58 C1 9ED sing 133 n n 
C1 C2 9ED sing 134 n n 
C50 C3 9ED sing 135 n n 
C3 C4 9ED sing 136 n n 
C4 C5 9ED sing 137 n n 
C5 C6 9ED sing 138 n n 
C1 H82 9ED sing 139 n n 
C1 H81 9ED sing 140 n n 
C2 H84 9ED sing 141 n n 
C2 H83 9ED sing 142 n n 
C2 H85 9ED sing 143 n n 
C6 H74 9ED sing 144 n n 
C6 H54 9ED sing 145 n n 
C6 H68 9ED sing 146 n n 
C5 H76 9ED sing 147 n n 
C5 H75 9ED sing 148 n n 
C4 H77 9ED sing 149 n n 
C4 H78 9ED sing 150 n n 
C3 H80 9ED sing 151 n n 
C3 H79 9ED sing 152 n n 
#
_atom_sites.entry_id                     9CJL 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 2 9ED B 1 301 301 9ED PIP . 
N 2 9ED H 1 301 301 9ED PIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C24 9ED . . . M 2 129.191 105.046 141.658 1 20 ? C24 9ED 301 B 1 
HETATM 2 C C26 9ED . . . M 2 131.09 104.825 140.125 1 20 ? C26 9ED 301 B 1 
HETATM 3 C C28 9ED . . . M 2 130.803 106.795 141.775 1 20 ? C28 9ED 301 B 1 
HETATM 4 P P01 9ED . . . M 2 133.755 106.6 139.096 1 20 ? P01 9ED 301 B 1 
HETATM 5 P P02 9ED . . . M 2 127.773 102.607 140.069 1 20 ? P02 9ED 301 B 1 
HETATM 6 O O04 9ED . . . M 2 132.982 106.264 140.565 1 20 ? O04 9ED 301 B 1 
HETATM 7 O O05 9ED . . . M 2 129.33 103.173 140.035 1 20 ? O05 9ED 301 B 1 
HETATM 8 O O06 9ED . . . M 2 127.895 104.614 141.998 1 20 ? O06 9ED 301 B 1 
HETATM 9 O O07 9ED . . . M 2 131.004 105.194 138.784 1 20 ? O07 9ED 301 B 1 
HETATM 10 O O08 9ED . . . M 2 128.411 107.115 142.666 1 20 ? O08 9ED 301 B 1 
HETATM 11 O O09 9ED . . . M 2 131.275 106.146 142.93 1 20 ? O09 9ED 301 B 1 
HETATM 12 O O10 9ED . . . M 2 135.414 106.7 139.285 1 20 ? O10 9ED 301 B 1 
HETATM 13 O O11 9ED . . . M 2 133.275 107.958 138.64 1 20 ? O11 9ED 301 B 1 
HETATM 14 O O12 9ED . . . M 2 127.593 101.696 141.263 1 20 ? O12 9ED 301 B 1 
HETATM 15 O O13 9ED . . . M 2 126.817 103.773 140.176 1 20 ? O13 9ED 301 B 1 
HETATM 16 O O16 9ED . . . M 2 133.406 105.546 138.067 1 20 ? O16 9ED 301 B 1 
HETATM 17 O O17 9ED . . . M 2 127.489 101.835 138.8 1 20 ? O17 9ED 301 B 1 
HETATM 18 O O19 9ED . . . M 2 137.603 109.392 138.183 1 20 ? O19 9ED 301 B 1 
HETATM 19 O O20 9ED . . . M 2 138.136 107.523 136.277 1 20 ? O20 9ED 301 B 1 
HETATM 20 O O21 9ED . . . M 2 139.843 109.195 137.846 1 20 ? O21 9ED 301 B 1 
HETATM 21 O O22 9ED . . . M 2 136.768 107.831 134.503 1 20 ? O22 9ED 301 B 1 
HETATM 22 C C23 9ED . . . M 2 129.576 104.545 140.2 1 20 ? C23 9ED 301 B 1 
HETATM 23 C C25 9ED . . . M 2 131.555 106.235 140.532 1 20 ? C25 9ED 301 B 1 
HETATM 24 C C27 9ED . . . M 2 129.25 106.592 141.669 1 20 ? C27 9ED 301 B 1 
HETATM 25 C C29 9ED . . . M 2 135.997 107.999 139.326 1 20 ? C29 9ED 301 B 1 
HETATM 26 C C30 9ED . . . M 2 137.257 108.046 138.447 1 20 ? C30 9ED 301 B 1 
HETATM 27 C C31 9ED . . . M 2 136.996 107.333 137.116 1 20 ? C31 9ED 301 B 1 
HETATM 28 C C32 9ED . . . M 2 138.964 109.738 138.437 1 20 ? C32 9ED 301 B 1 
HETATM 29 C C33 9ED . . . M 2 139.287 110.839 139.496 1 20 ? C33 9ED 301 B 1 
HETATM 30 C C34 9ED . . . M 2 140.737 111.407 139.447 1 20 ? C34 9ED 301 B 1 
HETATM 31 C C35 9ED . . . M 2 137.833 108.035 134.988 1 20 ? C35 9ED 301 B 1 
HETATM 32 C C36 9ED . . . M 2 141.609 112.161 140.494 1 20 ? C36 9ED 301 B 1 
HETATM 33 C C37 9ED . . . M 2 138.895 108.863 134.21 1 20 ? C37 9ED 301 B 1 
HETATM 34 C C38 9ED . . . M 2 142.722 113.057 139.876 1 20 ? C38 9ED 301 B 1 
HETATM 35 C C39 9ED . . . M 2 138.987 108.452 132.713 1 20 ? C39 9ED 301 B 1 
HETATM 36 C C40 9ED . . . M 2 138.759 109.656 131.754 1 20 ? C40 9ED 301 B 1 
HETATM 37 C C41 9ED . . . M 2 143.874 113.208 140.907 1 20 ? C41 9ED 301 B 1 
HETATM 38 C C42 9ED . . . M 2 139.908 109.815 130.719 1 20 ? C42 9ED 301 B 1 
HETATM 39 C C43 9ED . . . M 2 144.446 114.308 141.439 1 20 ? C43 9ED 301 B 1 
HETATM 40 C C44 9ED . . . M 2 140.225 111.306 130.418 1 20 ? C44 9ED 301 B 1 
HETATM 41 C C45 9ED . . . M 2 139.144 111.964 129.515 1 20 ? C45 9ED 301 B 1 
HETATM 42 C C46 9ED . . . M 2 144.005 115.751 141.07 1 20 ? C46 9ED 301 B 1 
HETATM 43 C C47 9ED . . . M 2 145.029 119.628 145.213 1 20 ? C47 9ED 301 B 1 
HETATM 44 C C48 9ED . . . M 2 145.414 120.338 146.57 1 20 ? C48 9ED 301 B 1 
HETATM 45 C C49 9ED . . . M 2 137.083 118.916 128.473 1 20 ? C49 9ED 301 B 1 
HETATM 46 C C50 9ED . . . M 2 136.449 119.654 129.685 1 20 ? C50 9ED 301 B 1 
HETATM 47 C C51 9ED . . . M 2 138.925 113.464 129.852 1 20 ? C51 9ED 301 B 1 
HETATM 48 C C52 9ED . . . M 2 145.9 118.86 144.395 1 20 ? C52 9ED 301 B 1 
HETATM 49 C C53 9ED . . . M 2 138.144 117.867 128.91 1 20 ? C53 9ED 301 B 1 
HETATM 50 C C54 9ED . . . M 2 145.581 121.872 146.35 1 20 ? C54 9ED 301 B 1 
HETATM 51 C C56 9ED . . . M 2 144.561 118.78 143.602 1 20 ? C56 9ED 301 B 1 
HETATM 52 C C57 9ED . . . M 2 138.299 116.724 127.871 1 20 ? C57 9ED 301 B 1 
HETATM 53 C C58 9ED . . . M 2 145.004 122.699 147.532 1 20 ? C58 9ED 301 B 1 
HETATM 54 C C60 9ED . . . M 2 143.879 116.607 142.371 1 20 ? C60 9ED 301 B 1 
HETATM 55 C C61 9ED . . . M 2 144.764 117.879 142.344 1 20 ? C61 9ED 301 B 1 
HETATM 56 C C62 9ED . . . M 2 139.064 114.371 128.602 1 20 ? C62 9ED 301 B 1 
HETATM 57 C C63 9ED . . . M 2 137.863 115.346 128.443 1 20 ? C63 9ED 301 B 1 
HETATM 58 C C1 9ED . . . M 2 144.373 124.038 147.074 1 20 ? C1 9ED 301 B 1 
HETATM 59 C C2 9ED . . . M 2 145.415 125.012 146.48 1 20 ? C2 9ED 301 B 1 
HETATM 60 C C3 9ED . . . M 2 136.916 121.136 129.782 1 20 ? C3 9ED 301 B 1 
HETATM 61 C C4 9ED . . . M 2 137.058 121.615 131.249 1 20 ? C4 9ED 301 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           61 
#