data_9CJL # _model_server_result.job_id tpibEu2hbwuYnUK3HEbYAw _model_server_result.datetime_utc '2024-11-14 07:35:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9cjl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":301}' # _entry.id 9CJL # _exptl.entry_id 9CJL _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 1023.066 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2R)-2-[(E)-octadec-9-enoyl]oxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] (E)-octadec-9-enoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 12-meric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 M N N ? 2 N N N # _chem_comp.formula 'C45 H85 O19 P3' _chem_comp.formula_weight 1023.066 _chem_comp.id 9ED _chem_comp.mon_nstd_flag . _chem_comp.name '[(2R)-2-[(E)-octadec-9-enoyl]oxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] (E)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PtdIns(4,5)P2 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C57 C53 9ED sing 1 n n C57 C63 9ED sing 2 n n C53 C49 9ED sing 3 n n C50 C49 9ED sing 4 n n C62 C63 9ED doub 5 e n C62 C51 9ED sing 6 n n C51 C45 9ED sing 7 n n C54 C48 9ED sing 8 n n C54 C58 9ED sing 9 n n C48 C47 9ED sing 10 n n C47 C52 9ED sing 11 n n C45 C44 9ED sing 12 n n C52 C56 9ED sing 13 n n C44 C42 9ED sing 14 n n C42 C40 9ED sing 15 n n C56 C61 9ED sing 16 n n C61 C60 9ED doub 17 e n C40 C39 9ED sing 18 n n C60 C46 9ED sing 19 n n C39 C37 9ED sing 20 n n C46 C43 9ED sing 21 n n O22 C35 9ED doub 22 n n C37 C35 9ED sing 23 n n C35 O20 9ED sing 24 n n C43 C41 9ED sing 25 n n C41 C38 9ED sing 26 n n O11 P01 9ED doub 27 n n O20 C31 9ED sing 28 n n C31 C30 9ED sing 29 n n C33 C32 9ED sing 30 n n C33 C34 9ED sing 31 n n C36 C38 9ED sing 32 n n C36 C34 9ED sing 33 n n C30 O19 9ED sing 34 n n C30 C29 9ED sing 35 n n P01 O10 9ED sing 36 n n P01 O04 9ED sing 37 n n P01 O16 9ED sing 38 n n C32 O21 9ED doub 39 n n C32 O19 9ED sing 40 n n O10 C29 9ED sing 41 n n O04 C25 9ED sing 42 n n O09 C28 9ED sing 43 n n C28 C25 9ED sing 44 n n C28 C27 9ED sing 45 n n C25 C26 9ED sing 46 n n O08 C27 9ED sing 47 n n C27 C24 9ED sing 48 n n C26 O07 9ED sing 49 n n C26 C23 9ED sing 50 n n C24 C23 9ED sing 51 n n C24 O06 9ED sing 52 n n C23 O05 9ED sing 53 n n O06 P03 9ED sing 54 n n O05 P02 9ED sing 55 n n O14 P03 9ED doub 56 n n O13 P02 9ED doub 57 n n P03 O18 9ED sing 58 n n P03 O15 9ED sing 59 n n P02 O17 9ED sing 60 n n P02 O12 9ED sing 61 n n C24 H1 9ED sing 62 n n C26 H2 9ED sing 63 n n C28 H3 9ED sing 64 n n O07 H4 9ED sing 65 n n O08 H5 9ED sing 66 n n O09 H6 9ED sing 67 n n O12 H7 9ED sing 68 n n O15 H8 9ED sing 69 n n O16 H9 9ED sing 70 n n O17 H10 9ED sing 71 n n O18 H11 9ED sing 72 n n C23 H12 9ED sing 73 n n C25 H13 9ED sing 74 n n C27 H14 9ED sing 75 n n C29 H15 9ED sing 76 n n C29 H16 9ED sing 77 n n C30 H17 9ED sing 78 n n C31 H18 9ED sing 79 n n C31 H19 9ED sing 80 n n C33 H20 9ED sing 81 n n C33 H21 9ED sing 82 n n C34 H22 9ED sing 83 n n C34 H23 9ED sing 84 n n C36 H24 9ED sing 85 n n C36 H25 9ED sing 86 n n C37 H26 9ED sing 87 n n C37 H27 9ED sing 88 n n C38 H28 9ED sing 89 n n C38 H29 9ED sing 90 n n C39 H30 9ED sing 91 n n C39 H31 9ED sing 92 n n C40 H32 9ED sing 93 n n C40 H33 9ED sing 94 n n C41 H34 9ED sing 95 n n C41 H35 9ED sing 96 n n C42 H36 9ED sing 97 n n C42 H37 9ED sing 98 n n C43 H38 9ED sing 99 n n C43 H39 9ED sing 100 n n C44 H40 9ED sing 101 n n C44 H41 9ED sing 102 n n C45 H42 9ED sing 103 n n C45 H43 9ED sing 104 n n C46 H44 9ED sing 105 n n C46 H45 9ED sing 106 n n C47 H46 9ED sing 107 n n C47 H47 9ED sing 108 n n C48 H48 9ED sing 109 n n C48 H49 9ED sing 110 n n C49 H50 9ED sing 111 n n C49 H51 9ED sing 112 n n C50 H52 9ED sing 113 n n C50 H53 9ED sing 114 n n C51 H55 9ED sing 115 n n C51 H56 9ED sing 116 n n C52 H57 9ED sing 117 n n C52 H58 9ED sing 118 n n C53 H59 9ED sing 119 n n C53 H60 9ED sing 120 n n C54 H61 9ED sing 121 n n C54 H62 9ED sing 122 n n C56 H63 9ED sing 123 n n C56 H64 9ED sing 124 n n C57 H65 9ED sing 125 n n C57 H66 9ED sing 126 n n C58 H67 9ED sing 127 n n C58 H69 9ED sing 128 n n C60 H70 9ED sing 129 n n C61 H71 9ED sing 130 n n C62 H72 9ED sing 131 n n C63 H73 9ED sing 132 n n C58 C1 9ED sing 133 n n C1 C2 9ED sing 134 n n C50 C3 9ED sing 135 n n C3 C4 9ED sing 136 n n C4 C5 9ED sing 137 n n C5 C6 9ED sing 138 n n C1 H82 9ED sing 139 n n C1 H81 9ED sing 140 n n C2 H84 9ED sing 141 n n C2 H83 9ED sing 142 n n C2 H85 9ED sing 143 n n C6 H74 9ED sing 144 n n C6 H54 9ED sing 145 n n C6 H68 9ED sing 146 n n C5 H76 9ED sing 147 n n C5 H75 9ED sing 148 n n C4 H77 9ED sing 149 n n C4 H78 9ED sing 150 n n C3 H80 9ED sing 151 n n C3 H79 9ED sing 152 n n # _atom_sites.entry_id 9CJL _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 2 9ED B 1 301 301 9ED PIP . N 2 9ED H 1 301 301 9ED PIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C24 9ED . . . N 2 127.291 107.759 115.311 1 20 ? C24 9ED 301 H 1 HETATM 2 C C26 9ED . . . N 2 129.521 106.944 114.704 1 20 ? C26 9ED 301 H 1 HETATM 3 C C28 9ED . . . N 2 128.993 109.422 115.213 1 20 ? C28 9ED 301 H 1 HETATM 4 P P01 9ED . . . N 2 132.564 108.163 113.955 1 20 ? P01 9ED 301 H 1 HETATM 5 P P02 9ED . . . N 2 126.131 104.847 114.499 1 20 ? P02 9ED 301 H 1 HETATM 6 O O04 9ED . . . N 2 131.353 108.469 115.098 1 20 ? O04 9ED 301 H 1 HETATM 7 O O05 9ED . . . N 2 127.683 105.375 114.738 1 20 ? O05 9ED 301 H 1 HETATM 8 O O06 9ED . . . N 2 125.911 107.487 115.363 1 20 ? O06 9ED 301 H 1 HETATM 9 O O07 9ED . . . N 2 129.885 106.703 113.381 1 20 ? O07 9ED 301 H 1 HETATM 10 O O08 9ED . . . N 2 126.5 110.043 115.073 1 20 ? O08 9ED 301 H 1 HETATM 11 O O09 9ED . . . N 2 129.015 109.338 116.617 1 20 ? O09 9ED 301 H 1 HETATM 12 O O10 9ED . . . N 2 134.09 108.368 114.608 1 20 ? O10 9ED 301 H 1 HETATM 13 O O11 9ED . . . N 2 132.409 109.186 112.855 1 20 ? O11 9ED 301 H 1 HETATM 14 O O12 9ED . . . N 2 125.495 104.529 115.833 1 20 ? O12 9ED 301 H 1 HETATM 15 O O13 9ED . . . N 2 125.334 105.927 113.805 1 20 ? O13 9ED 301 H 1 HETATM 16 O O16 9ED . . . N 2 132.415 106.764 113.397 1 20 ? O16 9ED 301 H 1 HETATM 17 O O17 9ED . . . N 2 126.149 103.602 113.641 1 20 ? O17 9ED 301 H 1 HETATM 18 O O19 9ED . . . N 2 136.815 110.376 113.268 1 20 ? O19 9ED 301 H 1 HETATM 19 O O20 9ED . . . N 2 137.665 107.883 112.579 1 20 ? O20 9ED 301 H 1 HETATM 20 O O21 9ED . . . N 2 139.013 110.099 113.781 1 20 ? O21 9ED 301 H 1 HETATM 21 O O22 9ED . . . N 2 136.937 107.378 110.498 1 20 ? O22 9ED 301 H 1 HETATM 22 C C23 9ED . . . N 2 128.031 106.692 114.396 1 20 ? C23 9ED 301 H 1 HETATM 23 C C25 9ED . . . N 2 130.008 108.401 114.623 1 20 ? C25 9ED 301 H 1 HETATM 24 C C27 9ED . . . N 2 127.529 109.162 114.706 1 20 ? C27 9ED 301 H 1 HETATM 25 C C29 9ED . . . N 2 134.786 109.571 114.298 1 20 ? C29 9ED 301 H 1 HETATM 26 C C30 9ED . . . N 2 136.247 109.264 113.933 1 20 ? C30 9ED 301 H 1 HETATM 27 C C31 9ED . . . N 2 136.312 108.046 113.006 1 20 ? C31 9ED 301 H 1 HETATM 28 C C32 9ED . . . N 2 138.069 110.824 113.78 1 20 ? C32 9ED 301 H 1 HETATM 29 C C33 9ED . . . N 2 138.19 112.278 114.337 1 20 ? C33 9ED 301 H 1 HETATM 30 C C34 9ED . . . N 2 139.646 112.799 114.529 1 20 ? C34 9ED 301 H 1 HETATM 31 C C35 9ED . . . N 2 137.825 107.79 111.171 1 20 ? C35 9ED 301 H 1 HETATM 32 C C36 9ED . . . N 2 140.249 113.946 115.394 1 20 ? C36 9ED 301 H 1 HETATM 33 C C37 9ED . . . N 2 139.162 108.228 110.509 1 20 ? C37 9ED 301 H 1 HETATM 34 C C38 9ED . . . N 2 141.594 114.515 114.856 1 20 ? C38 9ED 301 H 1 HETATM 35 C C39 9ED . . . N 2 139.647 107.221 109.429 1 20 ? C39 9ED 301 H 1 HETATM 36 C C40 9ED . . . N 2 139.862 107.895 108.044 1 20 ? C40 9ED 301 H 1 HETATM 37 C C41 9ED . . . N 2 142.396 115.115 116.045 1 20 ? C41 9ED 301 H 1 HETATM 38 C C42 9ED . . . N 2 141.279 107.621 107.464 1 20 ? C42 9ED 301 H 1 HETATM 39 C C43 9ED . . . N 2 142.909 116.347 116.232 1 20 ? C43 9ED 301 H 1 HETATM 40 C C44 9ED . . . N 2 141.847 108.847 106.698 1 20 ? C44 9ED 301 H 1 HETATM 41 C C45 9ED . . . N 2 141.173 109.035 105.309 1 20 ? C45 9ED 301 H 1 HETATM 42 C C46 9ED . . . N 2 142.776 117.486 115.184 1 20 ? C46 9ED 301 H 1 HETATM 43 C C47 9ED . . . N 2 142.971 122.78 117.46 1 20 ? C47 9ED 301 H 1 HETATM 44 C C48 9ED . . . N 2 143.015 124.008 118.451 1 20 ? C48 9ED 301 H 1 HETATM 45 C C49 9ED . . . N 2 140.367 114.835 100.909 1 20 ? C49 9ED 301 H 1 HETATM 46 C C50 9ED . . . N 2 139.493 116.007 101.437 1 20 ? C50 9ED 301 H 1 HETATM 47 C C51 9ED . . . N 2 141.045 110.53 104.913 1 20 ? C51 9ED 301 H 1 HETATM 48 C C52 9ED . . . N 2 143.948 121.754 117.357 1 20 ? C52 9ED 301 H 1 HETATM 49 C C53 9ED . . . N 2 141.115 114.094 102.052 1 20 ? C53 9ED 301 H 1 HETATM 50 C C54 9ED . . . N 2 143.423 125.305 117.688 1 20 ? C54 9ED 301 H 1 HETATM 51 C C56 9ED . . . N 2 142.908 121.316 116.283 1 20 ? C56 9ED 301 H 1 HETATM 52 C C57 9ED . . . N 2 141.436 112.62 101.684 1 20 ? C57 9ED 301 H 1 HETATM 53 C C58 9ED . . . N 2 142.622 126.545 118.173 1 20 ? C58 9ED 301 H 1 HETATM 54 C C60 9ED . . . N 2 142.37 118.813 115.903 1 20 ? C60 9ED 301 H 1 HETATM 55 C C61 9ED . . . N 2 143.368 119.969 115.643 1 20 ? C61 9ED 301 H 1 HETATM 56 C C62 9ED . . . N 2 141.659 110.82 103.518 1 20 ? C62 9ED 301 H 1 HETATM 57 C C63 9ED . . . N 2 140.686 111.609 102.597 1 20 ? C63 9ED 301 H 1 HETATM 58 C C3 9ED . . . N 2 140.084 117.397 101.062 1 20 ? C3 9ED 301 H 1 HETATM 59 C C4 9ED . . . N 2 139.837 118.459 102.164 1 20 ? C4 9ED 301 H 1 HETATM 60 C C5 9ED . . . N 2 141.132 119.216 102.549 1 20 ? C5 9ED 301 H 1 HETATM 61 C C6 9ED . . . N 2 141.375 120.452 101.657 1 20 ? C6 9ED 301 H 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 61 #