data_9CJN # _model_server_result.job_id ND0hXA9dC7WeGHnZ-bE1bw _model_server_result.datetime_utc '2025-07-25 13:25:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9cjn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 9CJN # _exptl.entry_id 9CJN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 267.241 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ADENOSINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9CJN _cell.length_a 69.85 _cell.length_b 96.23 _cell.length_c 129.04 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9CJN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H13 N5 O4' _chem_comp.formula_weight 267.241 _chem_comp.id ADN _chem_comp.mon_nstd_flag . _chem_comp.name ADENOSINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5' C5' ADN sing 1 n n O5' HO5' ADN sing 2 n n C5' C4' ADN sing 3 n n C5' "H5'1" ADN sing 4 n n C5' "H5'2" ADN sing 5 n n C4' O4' ADN sing 6 n n C4' C3' ADN sing 7 n n C4' H4' ADN sing 8 n n O4' C1' ADN sing 9 n n C3' O3' ADN sing 10 n n C3' C2' ADN sing 11 n n C3' H3' ADN sing 12 n n O3' HO3' ADN sing 13 n n C2' O2' ADN sing 14 n n C2' C1' ADN sing 15 n n C2' H2' ADN sing 16 n n O2' HO2' ADN sing 17 n n C1' N9 ADN sing 18 n n C1' H1' ADN sing 19 n n N9 C8 ADN sing 20 n y N9 C4 ADN sing 21 n y C8 N7 ADN doub 22 n y C8 H8 ADN sing 23 n n N7 C5 ADN sing 24 n y C5 C6 ADN sing 25 n y C5 C4 ADN doub 26 n y C6 N6 ADN sing 27 n n C6 N1 ADN doub 28 n y N6 HN61 ADN sing 29 n n N6 HN62 ADN sing 30 n n N1 C2 ADN sing 31 n y C2 N3 ADN doub 32 n y C2 H2 ADN sing 33 n n N3 C4 ADN sing 34 n y # _atom_sites.entry_id 9CJN _atom_sites.fract_transf_matrix[1][1] 0.014316 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010392 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00775 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MES A 1 601 601 MES MES . C 3 ADN A 1 602 602 ADN ADN . D 4 PEG A 1 603 603 PEG PEG . E 4 PEG A 1 604 604 PEG PEG . F 5 HOH A 1 701 10 HOH HOH . F 5 HOH A 2 702 73 HOH HOH . F 5 HOH A 3 703 59 HOH HOH . F 5 HOH A 4 704 74 HOH HOH . F 5 HOH A 5 705 1 HOH HOH . F 5 HOH A 6 706 5 HOH HOH . F 5 HOH A 7 707 106 HOH HOH . F 5 HOH A 8 708 116 HOH HOH . F 5 HOH A 9 709 65 HOH HOH . F 5 HOH A 10 710 33 HOH HOH . F 5 HOH A 11 711 2 HOH HOH . F 5 HOH A 12 712 58 HOH HOH . F 5 HOH A 13 713 98 HOH HOH . F 5 HOH A 14 714 86 HOH HOH . F 5 HOH A 15 715 113 HOH HOH . F 5 HOH A 16 716 15 HOH HOH . F 5 HOH A 17 717 4 HOH HOH . F 5 HOH A 18 718 14 HOH HOH . F 5 HOH A 19 719 114 HOH HOH . F 5 HOH A 20 720 115 HOH HOH . F 5 HOH A 21 721 3 HOH HOH . F 5 HOH A 22 722 7 HOH HOH . F 5 HOH A 23 723 44 HOH HOH . F 5 HOH A 24 724 104 HOH HOH . F 5 HOH A 25 725 109 HOH HOH . F 5 HOH A 26 726 35 HOH HOH . F 5 HOH A 27 727 26 HOH HOH . F 5 HOH A 28 728 40 HOH HOH . F 5 HOH A 29 729 71 HOH HOH . F 5 HOH A 30 730 52 HOH HOH . F 5 HOH A 31 731 53 HOH HOH . F 5 HOH A 32 732 84 HOH HOH . F 5 HOH A 33 733 22 HOH HOH . F 5 HOH A 34 734 67 HOH HOH . F 5 HOH A 35 735 43 HOH HOH . F 5 HOH A 36 736 6 HOH HOH . F 5 HOH A 37 737 102 HOH HOH . F 5 HOH A 38 738 54 HOH HOH . F 5 HOH A 39 739 47 HOH HOH . F 5 HOH A 40 740 112 HOH HOH . F 5 HOH A 41 741 101 HOH HOH . F 5 HOH A 42 742 31 HOH HOH . F 5 HOH A 43 743 64 HOH HOH . F 5 HOH A 44 744 91 HOH HOH . F 5 HOH A 45 745 36 HOH HOH . F 5 HOH A 46 746 23 HOH HOH . F 5 HOH A 47 747 60 HOH HOH . F 5 HOH A 48 748 63 HOH HOH . F 5 HOH A 49 749 42 HOH HOH . F 5 HOH A 50 750 39 HOH HOH . F 5 HOH A 51 751 68 HOH HOH . F 5 HOH A 52 752 51 HOH HOH . F 5 HOH A 53 753 49 HOH HOH . F 5 HOH A 54 754 96 HOH HOH . F 5 HOH A 55 755 18 HOH HOH . F 5 HOH A 56 756 25 HOH HOH . F 5 HOH A 57 757 21 HOH HOH . F 5 HOH A 58 758 117 HOH HOH . F 5 HOH A 59 759 72 HOH HOH . F 5 HOH A 60 760 48 HOH HOH . F 5 HOH A 61 761 87 HOH HOH . F 5 HOH A 62 762 83 HOH HOH . F 5 HOH A 63 763 76 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5' ADN . . . C 3 -24.728 7.501 -6.182 1 91.29 ? O5' ADN 602 A 1 HETATM 2 C C5' ADN . . . C 3 -24.092 7.405 -4.91 1 89.86 ? C5' ADN 602 A 1 HETATM 3 C C4' ADN . . . C 3 -24.937 6.641 -3.916 1 95.92 ? C4' ADN 602 A 1 HETATM 4 O O4' ADN . . . C 3 -25.791 5.694 -4.618 1 98.58 ? O4' ADN 602 A 1 HETATM 5 C C3' ADN . . . C 3 -24.172 5.786 -2.91 1 92.87 ? C3' ADN 602 A 1 HETATM 6 O O3' ADN . . . C 3 -23.713 6.518 -1.786 1 92.89 ? O3' ADN 602 A 1 HETATM 7 C C2' ADN . . . C 3 -25.173 4.698 -2.552 1 94.75 ? C2' ADN 602 A 1 HETATM 8 O O2' ADN . . . C 3 -26.127 5.185 -1.618 1 101.76 ? O2' ADN 602 A 1 HETATM 9 C C1' ADN . . . C 3 -25.877 4.483 -3.891 1 95.61 ? C1' ADN 602 A 1 HETATM 10 N N9 ADN . . . C 3 -25.271 3.404 -4.703 1 90.99 ? N9 ADN 602 A 1 HETATM 11 C C8 ADN . . . C 3 -25.066 3.455 -6.058 1 86.65 ? C8 ADN 602 A 1 HETATM 12 N N7 ADN . . . C 3 -24.533 2.385 -6.554 1 84.2 ? N7 ADN 602 A 1 HETATM 13 C C5 ADN . . . C 3 -24.372 1.553 -5.474 1 86.95 ? C5 ADN 602 A 1 HETATM 14 C C6 ADN . . . C 3 -23.847 0.246 -5.352 1 84.07 ? C6 ADN 602 A 1 HETATM 15 N N6 ADN . . . C 3 -23.374 -0.451 -6.395 1 78.56 ? N6 ADN 602 A 1 HETATM 16 N N1 ADN . . . C 3 -23.831 -0.298 -4.125 1 82.75 ? N1 ADN 602 A 1 HETATM 17 C C2 ADN . . . C 3 -24.295 0.394 -3.085 1 82.7 ? C2 ADN 602 A 1 HETATM 18 N N3 ADN . . . C 3 -24.805 1.615 -3.08 1 85.24 ? N3 ADN 602 A 1 HETATM 19 C C4 ADN . . . C 3 -24.826 2.161 -4.304 1 88.97 ? C4 ADN 602 A 1 # _model_server_stats.io_time_ms 135 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 19 #