data_9CJP
#
_model_server_result.job_id            XIOMrZM0YPZOul_0QCZuhA 
_model_server_result.datetime_utc      '2025-07-13 06:26:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9cjp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":402}' 
#
_entry.id    9CJP 
#
_exptl.entry_id    9CJP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.61 
_cell.angle_gamma         90 
_cell.entry_id            9CJP 
_cell.length_a            48.095 
_cell.length_b            105.665 
_cell.length_c            53.1 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9CJP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 145 A CYS 145 1_555 C C3 4WI . A 4WI 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.798 ? 
covale ? covale2 B SG CYS 145 B CYS 145 1_555 F C3 4WI . B 4WI 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.793 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 154 n n 
C1 C2 EDO sing 155 n n 
C1 H11 EDO sing 156 n n 
C1 H12 EDO sing 157 n n 
O1 HO1 EDO sing 158 n n 
C2 O2 EDO sing 159 n n 
C2 H21 EDO sing 160 n n 
C2 H22 EDO sing 161 n n 
O2 HO2 EDO sing 162 n n 
#
_atom_sites.entry_id                     9CJP 
_atom_sites.fract_transf_matrix[1][1]    0.020792 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005034 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009464 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019376 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 4WI A 1 401 401 4WI 4WI . 
D 3 EDO A 1 402 402 EDO EDO . 
E 4 BR A 1 403 2 BR BR . 
F 2 4WI B 1 401 401 4WI 4WI . 
G 3 EDO B 1 402 403 EDO EDO . 
H 4 BR B 1 403 1 BR BR . 
I 4 BR B 1 404 3 BR BR . 
J 5 SO4 B 1 405 1 SO4 SO4 . 
K 6 HOH A 1 501 52 HOH HOH . 
K 6 HOH A 2 502 56 HOH HOH . 
K 6 HOH A 3 503 1 HOH HOH . 
K 6 HOH A 4 504 3 HOH HOH . 
K 6 HOH A 5 505 66 HOH HOH . 
K 6 HOH A 6 506 34 HOH HOH . 
K 6 HOH A 7 507 90 HOH HOH . 
K 6 HOH A 8 508 6 HOH HOH . 
K 6 HOH A 9 509 22 HOH HOH . 
K 6 HOH A 10 510 5 HOH HOH . 
K 6 HOH A 11 511 41 HOH HOH . 
K 6 HOH A 12 512 89 HOH HOH . 
K 6 HOH A 13 513 21 HOH HOH . 
K 6 HOH A 14 514 24 HOH HOH . 
K 6 HOH A 15 515 4 HOH HOH . 
K 6 HOH A 16 516 38 HOH HOH . 
K 6 HOH A 17 517 59 HOH HOH . 
K 6 HOH A 18 518 2 HOH HOH . 
K 6 HOH A 19 519 44 HOH HOH . 
K 6 HOH A 20 520 65 HOH HOH . 
K 6 HOH A 21 521 68 HOH HOH . 
K 6 HOH A 22 522 88 HOH HOH . 
K 6 HOH A 23 523 31 HOH HOH . 
K 6 HOH A 24 524 74 HOH HOH . 
K 6 HOH A 25 525 42 HOH HOH . 
K 6 HOH A 26 526 57 HOH HOH . 
K 6 HOH A 27 527 63 HOH HOH . 
K 6 HOH A 28 528 36 HOH HOH . 
K 6 HOH A 29 529 70 HOH HOH . 
K 6 HOH A 30 530 71 HOH HOH . 
K 6 HOH A 31 531 91 HOH HOH . 
L 6 HOH B 1 501 64 HOH HOH . 
L 6 HOH B 2 502 51 HOH HOH . 
L 6 HOH B 3 503 26 HOH HOH . 
L 6 HOH B 4 504 50 HOH HOH . 
L 6 HOH B 5 505 53 HOH HOH . 
L 6 HOH B 6 506 37 HOH HOH . 
L 6 HOH B 7 507 67 HOH HOH . 
L 6 HOH B 8 508 81 HOH HOH . 
L 6 HOH B 9 509 61 HOH HOH . 
L 6 HOH B 10 510 69 HOH HOH . 
L 6 HOH B 11 511 27 HOH HOH . 
L 6 HOH B 12 512 14 HOH HOH . 
L 6 HOH B 13 513 55 HOH HOH . 
L 6 HOH B 14 514 25 HOH HOH . 
L 6 HOH B 15 515 43 HOH HOH . 
L 6 HOH B 16 516 78 HOH HOH . 
L 6 HOH B 17 517 23 HOH HOH . 
L 6 HOH B 18 518 93 HOH HOH . 
L 6 HOH B 19 519 48 HOH HOH . 
L 6 HOH B 20 520 10 HOH HOH . 
L 6 HOH B 21 521 40 HOH HOH . 
L 6 HOH B 22 522 49 HOH HOH . 
L 6 HOH B 23 523 12 HOH HOH . 
L 6 HOH B 24 524 9 HOH HOH . 
L 6 HOH B 25 525 54 HOH HOH . 
L 6 HOH B 26 526 8 HOH HOH . 
L 6 HOH B 27 527 35 HOH HOH . 
L 6 HOH B 28 528 13 HOH HOH . 
L 6 HOH B 29 529 29 HOH HOH . 
L 6 HOH B 30 530 60 HOH HOH . 
L 6 HOH B 31 531 79 HOH HOH . 
L 6 HOH B 32 532 84 HOH HOH . 
L 6 HOH B 33 533 28 HOH HOH . 
L 6 HOH B 34 534 20 HOH HOH . 
L 6 HOH B 35 535 45 HOH HOH . 
L 6 HOH B 36 536 75 HOH HOH . 
L 6 HOH B 37 537 46 HOH HOH . 
L 6 HOH B 38 538 39 HOH HOH . 
L 6 HOH B 39 539 17 HOH HOH . 
L 6 HOH B 40 540 83 HOH HOH . 
L 6 HOH B 41 541 80 HOH HOH . 
L 6 HOH B 42 542 11 HOH HOH . 
L 6 HOH B 43 543 85 HOH HOH . 
L 6 HOH B 44 544 76 HOH HOH . 
L 6 HOH B 45 545 30 HOH HOH . 
L 6 HOH B 46 546 19 HOH HOH . 
L 6 HOH B 47 547 7 HOH HOH . 
L 6 HOH B 48 548 73 HOH HOH . 
L 6 HOH B 49 549 33 HOH HOH . 
L 6 HOH B 50 550 16 HOH HOH . 
L 6 HOH B 51 551 82 HOH HOH . 
L 6 HOH B 52 552 58 HOH HOH . 
L 6 HOH B 53 553 32 HOH HOH . 
L 6 HOH B 54 554 62 HOH HOH . 
L 6 HOH B 55 555 18 HOH HOH . 
L 6 HOH B 56 556 47 HOH HOH . 
L 6 HOH B 57 557 15 HOH HOH . 
L 6 HOH B 58 558 86 HOH HOH . 
L 6 HOH B 59 559 77 HOH HOH . 
L 6 HOH B 60 560 72 HOH HOH . 
L 6 HOH B 61 561 92 HOH HOH . 
L 6 HOH B 62 562 87 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 3 -2.983 -15.814 7.947 1 50.46 ? C1 EDO 402 A 1 
HETATM 2 O O1 EDO . . . D 3 -2.175 -16.521 7 1 59.19 ? O1 EDO 402 A 1 
HETATM 3 C C2 EDO . . . D 3 -2.953 -14.328 7.633 1 48.34 ? C2 EDO 402 A 1 
HETATM 4 O O2 EDO . . . D 3 -3.569 -14.141 6.358 1 59.39 ? O2 EDO 402 A 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#