data_9CJR # _model_server_result.job_id QbYuBPnl4iIYMm7Le9Lh0w _model_server_result.datetime_utc '2025-07-12 19:05:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9cjr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 9CJR # _exptl.entry_id 9CJR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.76 _cell.angle_gamma 90 _cell.entry_id 9CJR _cell.length_a 54.437 _cell.length_b 99.397 _cell.length_c 57.077 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9CJR _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASN 221 A ASN 221 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.61 ? metalc ? metalc2 A OD1 ASN 221 A ASN 221 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc3 A O PHE 223 A PHE 223 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? metalc ? metalc4 A O ASP 263 A ASP 263 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? metalc ? metalc5 A OD1 ASP 263 A ASP 263 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc6 D MG MG . A MG 402 1_555 I O HOH . A HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.813 ? metalc ? metalc7 B O ASN 221 B ASN 221 1_555 G MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc8 B OD1 ASN 221 B ASN 221 1_555 G MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc9 B O PHE 223 B PHE 223 1_555 G MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc10 B O ASP 263 B ASP 263 1_555 G MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.795 ? metalc ? metalc11 B OD1 ASP 263 B ASP 263 1_555 G MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc12 G MG MG . B MG 402 1_555 J O HOH . B HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 9CJR _atom_sites.fract_transf_matrix[1][1] 0.01837 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005184 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010061 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018205 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 7YY A 1 401 401 7YY 7YY . D 3 MG A 1 402 402 MG MG . E 4 CL A 1 403 403 CL CL . F 2 7YY B 1 401 401 7YY 7YY . G 3 MG B 1 402 402 MG MG . H 4 CL B 1 403 403 CL CL . I 5 HOH A 1 501 242 HOH HOH . I 5 HOH A 2 502 9 HOH HOH . I 5 HOH A 3 503 3 HOH HOH . I 5 HOH A 4 504 2 HOH HOH . I 5 HOH A 5 505 1 HOH HOH . I 5 HOH A 6 506 6 HOH HOH . I 5 HOH A 7 507 259 HOH HOH . I 5 HOH A 8 508 7 HOH HOH . I 5 HOH A 9 509 4 HOH HOH . I 5 HOH A 10 510 8 HOH HOH . I 5 HOH A 11 511 11 HOH HOH . I 5 HOH A 12 512 5 HOH HOH . I 5 HOH A 13 513 17 HOH HOH . I 5 HOH A 14 514 13 HOH HOH . I 5 HOH A 15 515 15 HOH HOH . I 5 HOH A 16 516 10 HOH HOH . I 5 HOH A 17 517 12 HOH HOH . I 5 HOH A 18 518 14 HOH HOH . I 5 HOH A 19 519 21 HOH HOH . I 5 HOH A 20 520 16 HOH HOH . I 5 HOH A 21 521 19 HOH HOH . I 5 HOH A 22 522 20 HOH HOH . I 5 HOH A 23 523 240 HOH HOH . I 5 HOH A 24 524 23 HOH HOH . I 5 HOH A 25 525 22 HOH HOH . I 5 HOH A 26 526 18 HOH HOH . I 5 HOH A 27 527 24 HOH HOH . I 5 HOH A 28 528 28 HOH HOH . I 5 HOH A 29 529 251 HOH HOH . I 5 HOH A 30 530 31 HOH HOH . I 5 HOH A 31 531 29 HOH HOH . I 5 HOH A 32 532 33 HOH HOH . I 5 HOH A 33 533 26 HOH HOH . I 5 HOH A 34 534 32 HOH HOH . I 5 HOH A 35 535 35 HOH HOH . I 5 HOH A 36 536 43 HOH HOH . I 5 HOH A 37 537 38 HOH HOH . I 5 HOH A 38 538 25 HOH HOH . I 5 HOH A 39 539 51 HOH HOH . I 5 HOH A 40 540 37 HOH HOH . I 5 HOH A 41 541 45 HOH HOH . I 5 HOH A 42 542 40 HOH HOH . I 5 HOH A 43 543 36 HOH HOH . I 5 HOH A 44 544 41 HOH HOH . I 5 HOH A 45 545 30 HOH HOH . I 5 HOH A 46 546 50 HOH HOH . I 5 HOH A 47 547 44 HOH HOH . I 5 HOH A 48 548 27 HOH HOH . I 5 HOH A 49 549 34 HOH HOH . I 5 HOH A 50 550 47 HOH HOH . I 5 HOH A 51 551 46 HOH HOH . I 5 HOH A 52 552 235 HOH HOH . I 5 HOH A 53 553 39 HOH HOH . I 5 HOH A 54 554 48 HOH HOH . I 5 HOH A 55 555 42 HOH HOH . I 5 HOH A 56 556 49 HOH HOH . I 5 HOH A 57 557 54 HOH HOH . I 5 HOH A 58 558 56 HOH HOH . I 5 HOH A 59 559 68 HOH HOH . I 5 HOH A 60 560 65 HOH HOH . I 5 HOH A 61 561 63 HOH HOH . I 5 HOH A 62 562 61 HOH HOH . I 5 HOH A 63 563 58 HOH HOH . I 5 HOH A 64 564 64 HOH HOH . I 5 HOH A 65 565 57 HOH HOH . I 5 HOH A 66 566 59 HOH HOH . I 5 HOH A 67 567 52 HOH HOH . I 5 HOH A 68 568 55 HOH HOH . I 5 HOH A 69 569 67 HOH HOH . I 5 HOH A 70 570 257 HOH HOH . I 5 HOH A 71 571 53 HOH HOH . I 5 HOH A 72 572 71 HOH HOH . I 5 HOH A 73 573 66 HOH HOH . I 5 HOH A 74 574 69 HOH HOH . I 5 HOH A 75 575 75 HOH HOH . I 5 HOH A 76 576 77 HOH HOH . I 5 HOH A 77 577 76 HOH HOH . I 5 HOH A 78 578 72 HOH HOH . I 5 HOH A 79 579 60 HOH HOH . I 5 HOH A 80 580 62 HOH HOH . I 5 HOH A 81 581 78 HOH HOH . I 5 HOH A 82 582 73 HOH HOH . I 5 HOH A 83 583 70 HOH HOH . I 5 HOH A 84 584 79 HOH HOH . I 5 HOH A 85 585 263 HOH HOH . I 5 HOH A 86 586 80 HOH HOH . I 5 HOH A 87 587 86 HOH HOH . I 5 HOH A 88 588 81 HOH HOH . I 5 HOH A 89 589 83 HOH HOH . I 5 HOH A 90 590 74 HOH HOH . I 5 HOH A 91 591 85 HOH HOH . I 5 HOH A 92 592 84 HOH HOH . I 5 HOH A 93 593 82 HOH HOH . I 5 HOH A 94 594 88 HOH HOH . I 5 HOH A 95 595 91 HOH HOH . I 5 HOH A 96 596 89 HOH HOH . I 5 HOH A 97 597 87 HOH HOH . I 5 HOH A 98 598 93 HOH HOH . I 5 HOH A 99 599 90 HOH HOH . I 5 HOH A 100 600 92 HOH HOH . I 5 HOH A 101 601 94 HOH HOH . I 5 HOH A 102 602 95 HOH HOH . I 5 HOH A 103 603 97 HOH HOH . I 5 HOH A 104 604 239 HOH HOH . I 5 HOH A 105 605 250 HOH HOH . I 5 HOH A 106 606 99 HOH HOH . I 5 HOH A 107 607 101 HOH HOH . I 5 HOH A 108 608 102 HOH HOH . I 5 HOH A 109 609 96 HOH HOH . I 5 HOH A 110 610 98 HOH HOH . I 5 HOH A 111 611 100 HOH HOH . I 5 HOH A 112 612 254 HOH HOH . I 5 HOH A 113 613 258 HOH HOH . I 5 HOH A 114 614 103 HOH HOH . I 5 HOH A 115 615 237 HOH HOH . I 5 HOH A 116 616 104 HOH HOH . I 5 HOH A 117 617 105 HOH HOH . I 5 HOH A 118 618 241 HOH HOH . I 5 HOH A 119 619 236 HOH HOH . I 5 HOH A 120 620 106 HOH HOH . I 5 HOH A 121 621 261 HOH HOH . I 5 HOH A 122 622 249 HOH HOH . I 5 HOH A 123 623 108 HOH HOH . I 5 HOH A 124 624 255 HOH HOH . I 5 HOH A 125 625 107 HOH HOH . I 5 HOH A 126 626 109 HOH HOH . I 5 HOH A 127 627 110 HOH HOH . I 5 HOH A 128 628 245 HOH HOH . J 5 HOH B 1 501 111 HOH HOH . J 5 HOH B 2 502 112 HOH HOH . J 5 HOH B 3 503 113 HOH HOH . J 5 HOH B 4 504 114 HOH HOH . J 5 HOH B 5 505 115 HOH HOH . J 5 HOH B 6 506 119 HOH HOH . J 5 HOH B 7 507 118 HOH HOH . J 5 HOH B 8 508 117 HOH HOH . J 5 HOH B 9 509 116 HOH HOH . J 5 HOH B 10 510 120 HOH HOH . J 5 HOH B 11 511 123 HOH HOH . J 5 HOH B 12 512 124 HOH HOH . J 5 HOH B 13 513 122 HOH HOH . J 5 HOH B 14 514 121 HOH HOH . J 5 HOH B 15 515 128 HOH HOH . J 5 HOH B 16 516 129 HOH HOH . J 5 HOH B 17 517 125 HOH HOH . J 5 HOH B 18 518 126 HOH HOH . J 5 HOH B 19 519 131 HOH HOH . J 5 HOH B 20 520 130 HOH HOH . J 5 HOH B 21 521 133 HOH HOH . J 5 HOH B 22 522 136 HOH HOH . J 5 HOH B 23 523 132 HOH HOH . J 5 HOH B 24 524 135 HOH HOH . J 5 HOH B 25 525 141 HOH HOH . J 5 HOH B 26 526 127 HOH HOH . J 5 HOH B 27 527 139 HOH HOH . J 5 HOH B 28 528 142 HOH HOH . J 5 HOH B 29 529 144 HOH HOH . J 5 HOH B 30 530 134 HOH HOH . J 5 HOH B 31 531 138 HOH HOH . J 5 HOH B 32 532 145 HOH HOH . J 5 HOH B 33 533 146 HOH HOH . J 5 HOH B 34 534 137 HOH HOH . J 5 HOH B 35 535 143 HOH HOH . J 5 HOH B 36 536 158 HOH HOH . J 5 HOH B 37 537 260 HOH HOH . J 5 HOH B 38 538 150 HOH HOH . J 5 HOH B 39 539 147 HOH HOH . J 5 HOH B 40 540 152 HOH HOH . J 5 HOH B 41 541 140 HOH HOH . J 5 HOH B 42 542 148 HOH HOH . J 5 HOH B 43 543 151 HOH HOH . J 5 HOH B 44 544 160 HOH HOH . J 5 HOH B 45 545 168 HOH HOH . J 5 HOH B 46 546 154 HOH HOH . J 5 HOH B 47 547 155 HOH HOH . J 5 HOH B 48 548 157 HOH HOH . J 5 HOH B 49 549 169 HOH HOH . J 5 HOH B 50 550 165 HOH HOH . J 5 HOH B 51 551 156 HOH HOH . J 5 HOH B 52 552 159 HOH HOH . J 5 HOH B 53 553 149 HOH HOH . J 5 HOH B 54 554 163 HOH HOH . J 5 HOH B 55 555 164 HOH HOH . J 5 HOH B 56 556 174 HOH HOH . J 5 HOH B 57 557 161 HOH HOH . J 5 HOH B 58 558 180 HOH HOH . J 5 HOH B 59 559 167 HOH HOH . J 5 HOH B 60 560 177 HOH HOH . J 5 HOH B 61 561 176 HOH HOH . J 5 HOH B 62 562 179 HOH HOH . J 5 HOH B 63 563 183 HOH HOH . J 5 HOH B 64 564 182 HOH HOH . J 5 HOH B 65 565 170 HOH HOH . J 5 HOH B 66 566 153 HOH HOH . J 5 HOH B 67 567 162 HOH HOH . J 5 HOH B 68 568 196 HOH HOH . J 5 HOH B 69 569 186 HOH HOH . J 5 HOH B 70 570 173 HOH HOH . J 5 HOH B 71 571 175 HOH HOH . J 5 HOH B 72 572 178 HOH HOH . J 5 HOH B 73 573 262 HOH HOH . J 5 HOH B 74 574 166 HOH HOH . J 5 HOH B 75 575 185 HOH HOH . J 5 HOH B 76 576 193 HOH HOH . J 5 HOH B 77 577 181 HOH HOH . J 5 HOH B 78 578 189 HOH HOH . J 5 HOH B 79 579 172 HOH HOH . J 5 HOH B 80 580 171 HOH HOH . J 5 HOH B 81 581 187 HOH HOH . J 5 HOH B 82 582 191 HOH HOH . J 5 HOH B 83 583 206 HOH HOH . J 5 HOH B 84 584 194 HOH HOH . J 5 HOH B 85 585 197 HOH HOH . J 5 HOH B 86 586 184 HOH HOH . J 5 HOH B 87 587 202 HOH HOH . J 5 HOH B 88 588 208 HOH HOH . J 5 HOH B 89 589 199 HOH HOH . J 5 HOH B 90 590 243 HOH HOH . J 5 HOH B 91 591 246 HOH HOH . J 5 HOH B 92 592 190 HOH HOH . J 5 HOH B 93 593 213 HOH HOH . J 5 HOH B 94 594 210 HOH HOH . J 5 HOH B 95 595 192 HOH HOH . J 5 HOH B 96 596 201 HOH HOH . J 5 HOH B 97 597 211 HOH HOH . J 5 HOH B 98 598 200 HOH HOH . J 5 HOH B 99 599 188 HOH HOH . J 5 HOH B 100 600 204 HOH HOH . J 5 HOH B 101 601 195 HOH HOH . J 5 HOH B 102 602 198 HOH HOH . J 5 HOH B 103 603 238 HOH HOH . J 5 HOH B 104 604 203 HOH HOH . J 5 HOH B 105 605 215 HOH HOH . J 5 HOH B 106 606 212 HOH HOH . J 5 HOH B 107 607 216 HOH HOH . J 5 HOH B 108 608 205 HOH HOH . J 5 HOH B 109 609 214 HOH HOH . J 5 HOH B 110 610 207 HOH HOH . J 5 HOH B 111 611 209 HOH HOH . J 5 HOH B 112 612 217 HOH HOH . J 5 HOH B 113 613 224 HOH HOH . J 5 HOH B 114 614 244 HOH HOH . J 5 HOH B 115 615 218 HOH HOH . J 5 HOH B 116 616 221 HOH HOH . J 5 HOH B 117 617 220 HOH HOH . J 5 HOH B 118 618 219 HOH HOH . J 5 HOH B 119 619 222 HOH HOH . J 5 HOH B 120 620 223 HOH HOH . J 5 HOH B 121 621 248 HOH HOH . J 5 HOH B 122 622 225 HOH HOH . J 5 HOH B 123 623 226 HOH HOH . J 5 HOH B 124 624 227 HOH HOH . J 5 HOH B 125 625 256 HOH HOH . J 5 HOH B 126 626 228 HOH HOH . J 5 HOH B 127 627 229 HOH HOH . J 5 HOH B 128 628 247 HOH HOH . J 5 HOH B 129 629 230 HOH HOH . J 5 HOH B 130 630 231 HOH HOH . J 5 HOH B 131 631 232 HOH HOH . J 5 HOH B 132 632 253 HOH HOH . J 5 HOH B 133 633 233 HOH HOH . J 5 HOH B 134 634 234 HOH HOH . J 5 HOH B 135 635 252 HOH HOH . J 5 HOH B 136 636 264 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 12.595 _atom_site.Cartn_y 31.809 _atom_site.Cartn_z 8.848 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 43.25 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 402 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 576 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #