data_9CJV # _model_server_result.job_id Pgql1q93GoSlDjrQVLQ7LA _model_server_result.datetime_utc '2025-07-16 06:40:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9cjv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 9CJV # _exptl.entry_id 9CJV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 452.546 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-[(2~{S})-3-cyclohexyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanylidene-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]propan-2-yl]-1~{H}-indole-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.59 _cell.angle_gamma 90 _cell.entry_id 9CJV _cell.length_a 109.156 _cell.length_b 52.593 _cell.length_c 46.229 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9CJV _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -9.287727 0 45.286406 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C31 _struct_conn.ptnr2_label_comp_id FHR _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id FHR _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.773 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C25 H32 N4 O4' _chem_comp.formula_weight 452.546 _chem_comp.id FHR _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-[(2~{S})-3-cyclohexyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanylidene-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]propan-2-yl]-1~{H}-indole-2-carboxamide _chem_comp.type peptide-like _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C05 FHR doub 92 n y C10 C09 FHR sing 93 n y C10 N11 FHR sing 94 n y N12 C13 FHR sing 95 n n N12 C02 FHR sing 96 n n C13 C21 FHR sing 97 n n C13 C14 FHR sing 98 n n C15 C20 FHR sing 99 n n C15 C14 FHR sing 100 n n C15 C16 FHR sing 101 n n C17 C16 FHR sing 102 n n C17 C18 FHR sing 103 n n C20 C19 FHR sing 104 n n C21 N22 FHR sing 105 n n C21 O33 FHR doub 106 n n C24 C23 FHR sing 107 n n C24 C25 FHR sing 108 n n C26 C25 FHR sing 109 n n C02 C03 FHR sing 110 n n C02 O01 FHR doub 111 n n C03 C04 FHR doub 112 n y C03 N11 FHR sing 113 n y C04 C05 FHR sing 114 n y C05 C06 FHR sing 115 n y C06 C07 FHR doub 116 n y C07 C08 FHR sing 117 n y C08 C09 FHR doub 118 n y C18 C19 FHR sing 119 n n C23 C31 FHR sing 120 n n C23 N22 FHR sing 121 n n C25 C29 FHR sing 122 n n C27 N28 FHR sing 123 n n C29 N28 FHR sing 124 n n C29 O30 FHR doub 125 n n C31 O32 FHR doub 126 n n N12 H1 FHR sing 127 n n C13 H2 FHR sing 128 n n C15 H3 FHR sing 129 n n C17 H4 FHR sing 130 n n C17 H5 FHR sing 131 n n C20 H6 FHR sing 132 n n C20 H7 FHR sing 133 n n C24 H8 FHR sing 134 n n C24 H9 FHR sing 135 n n C26 H10 FHR sing 136 n n C26 H11 FHR sing 137 n n C04 H13 FHR sing 138 n n C06 H14 FHR sing 139 n n C07 H15 FHR sing 140 n n C08 H16 FHR sing 141 n n C09 H17 FHR sing 142 n n C14 H18 FHR sing 143 n n C14 H19 FHR sing 144 n n C16 H20 FHR sing 145 n n C16 H21 FHR sing 146 n n C18 H22 FHR sing 147 n n C18 H23 FHR sing 148 n n C19 H24 FHR sing 149 n n C19 H25 FHR sing 150 n n C23 H26 FHR sing 151 n n C25 H27 FHR sing 152 n n C27 H28 FHR sing 153 n n C27 H29 FHR sing 154 n n C31 H31 FHR sing 155 n n N11 H32 FHR sing 156 n n N22 H33 FHR sing 157 n n N28 H34 FHR sing 158 n n C26 C27 FHR sing 159 n n # _atom_sites.entry_id 9CJV _atom_sites.fract_transf_matrix[1][1] 0.009161 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001879 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019014 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022082 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FHR A 1 401 401 FHR FHR . C 3 DMS A 1 402 402 DMS DMS . D 3 DMS A 1 403 403 DMS DMS . E 4 HOH A 1 501 18 HOH HOH . E 4 HOH A 2 502 16 HOH HOH . E 4 HOH A 3 503 1 HOH HOH . E 4 HOH A 4 504 5 HOH HOH . E 4 HOH A 5 505 28 HOH HOH . E 4 HOH A 6 506 12 HOH HOH . E 4 HOH A 7 507 3 HOH HOH . E 4 HOH A 8 508 32 HOH HOH . E 4 HOH A 9 509 48 HOH HOH . E 4 HOH A 10 510 43 HOH HOH . E 4 HOH A 11 511 2 HOH HOH . E 4 HOH A 12 512 36 HOH HOH . E 4 HOH A 13 513 29 HOH HOH . E 4 HOH A 14 514 50 HOH HOH . E 4 HOH A 15 515 56 HOH HOH . E 4 HOH A 16 516 21 HOH HOH . E 4 HOH A 17 517 6 HOH HOH . E 4 HOH A 18 518 38 HOH HOH . E 4 HOH A 19 519 10 HOH HOH . E 4 HOH A 20 520 53 HOH HOH . E 4 HOH A 21 521 15 HOH HOH . E 4 HOH A 22 522 4 HOH HOH . E 4 HOH A 23 523 8 HOH HOH . E 4 HOH A 24 524 17 HOH HOH . E 4 HOH A 25 525 19 HOH HOH . E 4 HOH A 26 526 9 HOH HOH . E 4 HOH A 27 527 22 HOH HOH . E 4 HOH A 28 528 13 HOH HOH . E 4 HOH A 29 529 26 HOH HOH . E 4 HOH A 30 530 42 HOH HOH . E 4 HOH A 31 531 41 HOH HOH . E 4 HOH A 32 532 24 HOH HOH . E 4 HOH A 33 533 44 HOH HOH . E 4 HOH A 34 534 54 HOH HOH . E 4 HOH A 35 535 46 HOH HOH . E 4 HOH A 36 536 40 HOH HOH . E 4 HOH A 37 537 59 HOH HOH . E 4 HOH A 38 538 33 HOH HOH . E 4 HOH A 39 539 11 HOH HOH . E 4 HOH A 40 540 35 HOH HOH . E 4 HOH A 41 541 34 HOH HOH . E 4 HOH A 42 542 57 HOH HOH . E 4 HOH A 43 543 25 HOH HOH . E 4 HOH A 44 544 7 HOH HOH . E 4 HOH A 45 545 58 HOH HOH . E 4 HOH A 46 546 30 HOH HOH . E 4 HOH A 47 547 39 HOH HOH . E 4 HOH A 48 548 27 HOH HOH . E 4 HOH A 49 549 45 HOH HOH . E 4 HOH A 50 550 61 HOH HOH . E 4 HOH A 51 551 20 HOH HOH . E 4 HOH A 52 552 37 HOH HOH . E 4 HOH A 53 553 14 HOH HOH . E 4 HOH A 54 554 31 HOH HOH . E 4 HOH A 55 555 60 HOH HOH . E 4 HOH A 56 556 49 HOH HOH . E 4 HOH A 57 557 51 HOH HOH . E 4 HOH A 58 558 52 HOH HOH . E 4 HOH A 59 559 23 HOH HOH . E 4 HOH A 60 560 47 HOH HOH . E 4 HOH A 61 561 55 HOH HOH . E 4 HOH A 62 562 62 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 FHR . . . B 2 -14.611 3.491 -0.007 1 31.81 ? C02 FHR 401 A 1 HETATM 2 C C07 FHR . . . B 2 -15.883 8.524 -3.072 1 35.57 ? C07 FHR 401 A 1 HETATM 3 C C08 FHR . . . B 2 -15.356 9.088 -1.91 1 41.16 ? C08 FHR 401 A 1 HETATM 4 C C09 FHR . . . B 2 -14.907 8.307 -0.87 1 39.2 ? C09 FHR 401 A 1 HETATM 5 C C10 FHR . . . B 2 -14.999 6.928 -1.018 1 30.32 ? C10 FHR 401 A 1 HETATM 6 C C05 FHR . . . B 2 -15.528 6.332 -2.185 1 36.12 ? C05 FHR 401 A 1 HETATM 7 C C06 FHR . . . B 2 -15.974 7.162 -3.223 1 37.28 ? C06 FHR 401 A 1 HETATM 8 C C04 FHR . . . B 2 -15.466 4.929 -1.989 1 34.05 ? C04 FHR 401 A 1 HETATM 9 C C03 FHR . . . B 2 -14.909 4.715 -0.756 1 24.76 ? C03 FHR 401 A 1 HETATM 10 N N11 FHR . . . B 2 -14.636 5.924 -0.162 1 28.61 ? N11 FHR 401 A 1 HETATM 11 O O01 FHR . . . B 2 -14.453 3.529 1.217 1 27.31 ? O01 FHR 401 A 1 HETATM 12 N N12 FHR . . . B 2 -14.532 2.352 -0.731 1 29.56 ? N12 FHR 401 A 1 HETATM 13 C C13 FHR . . . B 2 -14.391 1.117 -0.068 1 34.06 ? C13 FHR 401 A 1 HETATM 14 C C21 FHR . . . B 2 -12.978 0.792 0.428 1 30.94 ? C21 FHR 401 A 1 HETATM 15 O O33 FHR . . . B 2 -12.008 1.005 -0.303 1 29.69 ? O33 FHR 401 A 1 HETATM 16 C C14 FHR . . . B 2 -14.807 -0.077 -0.974 1 36.15 ? C14 FHR 401 A 1 HETATM 17 C C15 FHR . . . B 2 -16.12 0.129 -1.726 1 37.95 ? C15 FHR 401 A 1 HETATM 18 C C20 FHR . . . B 2 -17.265 0.432 -0.757 1 45.22 ? C20 FHR 401 A 1 HETATM 19 C C19 FHR . . . B 2 -18.589 0.639 -1.486 1 48.42 ? C19 FHR 401 A 1 HETATM 20 C C18 FHR . . . B 2 -18.937 -0.564 -2.341 1 41.05 ? C18 FHR 401 A 1 HETATM 21 C C17 FHR . . . B 2 -17.82 -0.858 -3.328 1 45.84 ? C17 FHR 401 A 1 HETATM 22 C C16 FHR . . . B 2 -16.491 -1.068 -2.605 1 49.52 ? C16 FHR 401 A 1 HETATM 23 O O30 FHR . . . B 2 -11.27 3.011 5.45 1 35.34 ? O30 FHR 401 A 1 HETATM 24 C C29 FHR . . . B 2 -10.622 3.001 4.392 1 25.53 ? C29 FHR 401 A 1 HETATM 25 N N28 FHR . . . B 2 -9.547 3.734 4.108 1 27.58 ? N28 FHR 401 A 1 HETATM 26 C C27 FHR . . . B 2 -9.274 3.807 2.68 1 29.1 ? C27 FHR 401 A 1 HETATM 27 C C26 FHR . . . B 2 -9.758 2.442 2.222 1 31.47 ? C26 FHR 401 A 1 HETATM 28 C C25 FHR . . . B 2 -10.949 2.172 3.157 1 26.82 ? C25 FHR 401 A 1 HETATM 29 C C24 FHR . . . B 2 -11.217 0.702 3.46 1 28.19 ? C24 FHR 401 A 1 HETATM 30 C C23 FHR . . . B 2 -11.556 -0.107 2.208 1 35.32 ? C23 FHR 401 A 1 HETATM 31 N N22 FHR . . . B 2 -12.851 0.285 1.662 1 31.05 ? N22 FHR 401 A 1 HETATM 32 C C31 FHR . . . B 2 -11.521 -1.618 2.503 1 30.69 ? C31 FHR 401 A 1 HETATM 33 O O32 FHR . . . B 2 -10.527 -2.192 2.827 1 27.55 ? O32 FHR 401 A 1 HETATM 34 H H2 FHR . . . B 2 -14.979 1.227 0.728 1 40.96 ? H2 FHR 401 A 1 HETATM 35 H H15 FHR . . . B 2 -16.181 9.088 -3.766 1 42.78 ? H15 FHR 401 A 1 HETATM 36 H H16 FHR . . . B 2 -15.307 10.024 -1.835 1 49.49 ? H16 FHR 401 A 1 HETATM 37 H H17 FHR . . . B 2 -14.551 8.691 -0.087 1 47.12 ? H17 FHR 401 A 1 HETATM 38 H H14 FHR . . . B 2 -16.33 6.789 -4.011 1 44.83 ? H14 FHR 401 A 1 HETATM 39 H H13 FHR . . . B 2 -15.755 4.267 -2.596 1 40.95 ? H13 FHR 401 A 1 HETATM 40 H H32 FHR . . . B 2 -14.286 6.037 0.638 1 34.42 ? H32 FHR 401 A 1 HETATM 41 H H1 FHR . . . B 2 -14.567 2.378 -1.602 1 35.57 ? H1 FHR 401 A 1 HETATM 42 H H18 FHR . . . B 2 -14.889 -0.886 -0.414 1 43.47 ? H18 FHR 401 A 1 HETATM 43 H H19 FHR . . . B 2 -14.09 -0.239 -1.633 1 43.47 ? H19 FHR 401 A 1 HETATM 44 H H3 FHR . . . B 2 -16 0.897 -2.324 1 45.63 ? H3 FHR 401 A 1 HETATM 45 H H7 FHR . . . B 2 -17.356 -0.31 -0.126 1 54.35 ? H7 FHR 401 A 1 HETATM 46 H H6 FHR . . . B 2 -17.048 1.238 -0.246 1 54.35 ? H6 FHR 401 A 1 HETATM 47 H H25 FHR . . . B 2 -18.526 1.438 -2.056 1 58.19 ? H25 FHR 401 A 1 HETATM 48 H H24 FHR . . . B 2 -19.303 0.79 -0.828 1 58.19 ? H24 FHR 401 A 1 HETATM 49 H H23 FHR . . . B 2 -19.77 -0.39 -2.83 1 49.35 ? H23 FHR 401 A 1 HETATM 50 H H22 FHR . . . B 2 -19.08 -1.347 -1.765 1 49.35 ? H22 FHR 401 A 1 HETATM 51 H H5 FHR . . . B 2 -17.735 -0.108 -3.958 1 55.1 ? H5 FHR 401 A 1 HETATM 52 H H4 FHR . . . B 2 -18.043 -1.664 -3.844 1 55.1 ? H4 FHR 401 A 1 HETATM 53 H H20 FHR . . . B 2 -16.551 -1.869 -2.046 1 59.52 ? H20 FHR 401 A 1 HETATM 54 H H21 FHR . . . B 2 -15.784 -1.212 -3.265 1 59.52 ? H21 FHR 401 A 1 HETATM 55 H H34 FHR . . . B 2 -9.062 4.128 4.719 1 33.19 ? H34 FHR 401 A 1 HETATM 56 H H28 FHR . . . B 2 -8.313 3.936 2.498 1 35 ? H28 FHR 401 A 1 HETATM 57 H H29 FHR . . . B 2 -9.779 4.538 2.249 1 35 ? H29 FHR 401 A 1 HETATM 58 H H10 FHR . . . B 2 -9.062 1.765 2.33 1 37.86 ? H10 FHR 401 A 1 HETATM 59 H H11 FHR . . . B 2 -10.039 2.461 1.286 1 37.86 ? H11 FHR 401 A 1 HETATM 60 H H27 FHR . . . B 2 -11.774 2.559 2.769 1 32.27 ? H27 FHR 401 A 1 HETATM 61 H H9 FHR . . . B 2 -11.961 0.635 4.095 1 33.92 ? H9 FHR 401 A 1 HETATM 62 H H8 FHR . . . B 2 -10.425 0.312 3.888 1 33.92 ? H8 FHR 401 A 1 HETATM 63 H H26 FHR . . . B 2 -10.857 0.087 1.533 1 42.47 ? H26 FHR 401 A 1 HETATM 64 H H33 FHR . . . B 2 -13.563 0.186 2.155 1 37.35 ? H33 FHR 401 A 1 # _model_server_stats.io_time_ms 101 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 64 #